Fungal Genome Collection
University of Nebraska Lincoln
School of Biological Sciences and Center for Plant Science Innovation
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UniProt_SwissProt BLAST: Single locus
Species:
Saccharomyces cerevisiae S288C
Locus:
YGL213C
Length:
397
Number of sequences:
5887
Description:
YGL213C SKI8 SGDID:S000003181, Chr VII from 91247-90054, Genome Release 64-1-1, reverse complement, Verified ORF, "Ski complex component and WD-repeat protein, mediates 3'-5' RNA degradation by the cytoplasmic exosome; also required for meiotic double-strand break recombination; null mutants have superkiller phenotype"
rec.SubjectHit LengthDescriptionAlign.LenE valueBit score% ident.  % pos.GO associations
91A5D7H2    797   STRN3_BOVIN Striatin-3 OS=Bos taurus (Bovine)...980.53     36.2     22     54GO:0005654; C:nucleoplasm; ISS:UniProtKB.
GO:0005516; F:calmodulin binding; IEA:UniProtKB-KW.::GO:0003700; F:sequence-specific DNA binding transcription factor activity; ISS:UniProtKB.
GO:0000122; P:negative regulation of transcription from RNA polymerase II promoter; ISS:UniProtKB.::GO:0045944; P:positive regulation of transcription from RNA polymerase II promoter; ISS:UniProtKB.
92Q17963    376   TG125_CAEEL WD repeat-containing protein tag-...1410.11     38.1     25     40GO:0005634; C:nucleus; IDA:WormBase.
GO:0008340; P:determination of adult lifespan; IMP:WormBase.::GO:0051568; P:histone H3-K4 methylation; IMP:WormBase.::GO:0040027; P:negative regulation of vulval development; IMP:WormBase.::GO:0000003; P:reproduction; IMP:WormBase.
93Q5ZME8    513   SMU1_CHICK WD40 repeat-containing protein SMU...1270.022     40.4     28     44GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
94Q10281    314   GBLP_SCHPO Guanine nucleotide-binding protein...1340.024     40     27     50GO:0005737; C:cytoplasm; ISS:PomBase.::GO:0016020; C:membrane; IEA:UniProtKB-SubCell.
GO:0005080; F:protein kinase C binding; IPI:PomBase.::GO:0043022; F:ribosome binding; IDA:PomBase.
GO:0034613; P:cellular protein localization; IGI:PomBase.::GO:0035556; P:intracellular signal transduction; IMP:PomBase.::GO:2000766; P:negative regulation of cytoplasmic translation; ISS:PomBase.::GO:0031139; P:positive regulation of conjugation with cellular fusion; IMP:PomBase.::GO:0032956; P:regulation of actin cytoskeleton organization; IGI:PomBase.::GO:0032995; P:regulation of fungal-type cell wall biogenesis; IGI:PomBase.
95Q2KJH4    606   WDR1_BOVIN WD repeat-containing protein 1 OS=...1090.024     40.4     25     47GO:0005737; C:cytoplasm; IEA:UniProtKB-KW.::GO:0005856; C:cytoskeleton; IEA:UniProtKB-SubCell.
GO:0003779; F:actin binding; IEA:UniProtKB-KW.
96Q5BDU4    1031   HIR1_EMENI Protein hir1 OS=194 / M139) (Asper...1080.026     40.4     30     44GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0003682; F:chromatin binding; IEA:InterPro.
GO:0016568; P:chromatin modification; IEA:UniProtKB-KW.::GO:0006355; P:regulation of transcription, DNA-dependent; IEA:UniProtKB-KW.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW.
97Q12788    808   TBL3_HUMAN Transducin beta-like protein 3 OS=...1460.028     40.4     23     39GO:0005730; C:nucleolus; IDA:HPA.::GO:0032040; C:small-subunit processome; IEA:InterPro.
GO:0005057; F:receptor signaling protein activity; TAS:ProtInc.
GO:0007199; P:G-protein signaling, coupled to cGMP nucleotide second messenger; TAS:ProtInc.::GO:0006364; P:rRNA processing; IEA:InterPro.
98Q229Z6    634   POC1_TETTS POC1 centriolar protein homolog OS...491.4     35     27     47GO:0005929; C:cilium; IEA:UniProtKB-KW.::GO:0005932; C:microtubule basal body; IDA:UniProtKB.
GO:0030030; P:cell projection organization; IEA:UniProtKB-KW.::GO:0051297; P:centrosome organization; IMP:UniProtKB.
99P25382    515   NLE1_YEAST Ribosome assembly protein 4 OS=Sac...1253.8     33.5     22     41GO:0005730; C:nucleolus; IDA:SGD.
GO:0005515; F:protein binding; IPI:IntAct.
GO:0000027; P:ribosomal large subunit assembly; IMP:SGD.
100Q54KL5    335   WDR5_DICDI WD repeat-containing protein 5 hom...930.73     35.4     28     45GO:0035097; C:histone methyltransferase complex; ISS:dictyBase.
GO:0042393; F:histone binding; ISS:dictyBase.
GO:0051568; P:histone H3-K4 methylation; ISS:dictyBase.
101O88342    606   WDR1_MOUSE WD repeat-containing protein 1 OS=...1100.031     40     26     49GO:0005737; C:cytoplasm; IEA:UniProtKB-KW.::GO:0005856; C:cytoskeleton; IEA:UniProtKB-SubCell.
GO:0003779; F:actin binding; IEA:UniProtKB-KW.
102Q91WQ5    589   TAF5L_MOUSE TAF5-like RNA polymerase II p300/...480.031     40     40     56GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0006355; P:regulation of transcription, DNA-dependent; IEA:UniProtKB-KW.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW.
103A3GFK8    1244   SEC31_PICST Protein transport protein SEC31 O...1360.032     40.4     27     46GO:0005789; C:endoplasmic reticulum membrane; IEA:UniProtKB-SubCell.::GO:0012507; C:ER to Golgi transport vesicle membrane; IEA:UniProtKB-SubCell.
GO:0015031; P:protein transport; IEA:UniProtKB-KW.::GO:0016192; P:vesicle-mediated transport; IEA:UniProtKB-KW.
104Q5SQM0    1958   EMAL6_MOUSE Echinoderm microtubule-associated...1120.032     40.4     31     46GO:0005737; C:cytoplasm; IEA:UniProtKB-KW.::GO:0005874; C:microtubule; IEA:UniProtKB-KW.
105Q70M86    845   STRN_SORMK Striatin Pro11 OS=K-hell). GN=pro1...670.033     40     39     48GO:0016020; C:membrane; IEA:UniProtKB-SubCell.::GO:0005624; C:membrane fraction; IDA:UniProtKB.
GO:0005516; F:calmodulin binding; IEA:UniProtKB-KW.
GO:0030154; P:cell differentiation; IMP:UniProtKB.::GO:0000909; P:sporocarp development involved in sexual reproduction; IMP:UniProtKB.
106A0CH87    403   LIS12_PARTE Lissencephaly-1 homolog 2 OS=Para...1440.034     39.7     26     43GO:0005874; C:microtubule; IEA:UniProtKB-KW.::GO:0005815; C:microtubule organizing center; IEA:UniProtKB-SubCell.
GO:0051301; P:cell division; IEA:UniProtKB-KW.::GO:0007067; P:mitosis; IEA:UniProtKB-KW.::GO:0006810; P:transport; IEA:UniProtKB-KW.
107O43815    780   STRN_HUMAN Striatin OS=Homo sapiens (Human). ...2180.036     40     23     38GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0043025; C:neuronal cell body; ISS:UniProtKB.::GO:0014069; C:postsynaptic density; ISS:UniProtKB.::GO:0045211; C:postsynaptic membrane; ISS:UniProtKB.::GO:0005923; C:tight junction; IDA:UniProtKB.
GO:0070016; F:armadillo repeat domain binding; IPI:UniProtKB.::GO:0005516; F:calmodulin binding; ISS:UniProtKB.::GO:0030331; F:estrogen receptor binding; IPI:UniProtKB.::GO:0032403; F:protein complex binding; IDA:UniProtKB.::GO:0051721; F:protein phosphatase 2A binding; IDA:UniProtKB.
GO:0016358; P:dendrite development; ISS:UniProtKB.::GO:0007626; P:locomotory behavior; ISS:UniProtKB.::GO:0008285; P:negative regulation of cell proliferation; IMP:UniProtKB.::GO:0070830; P:tight junction assembly; NAS:UniProtKB.::GO:0016055; P:Wnt receptor signaling pathway; IMP:UniProtKB.
108Q6P4J8    513   SMU1_XENTR WD40 repeat-containing protein SMU...1270.038     39.7     25     44GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
109P91341    910   PWP2_CAEEL Periodic tryptophan protein 2 homo...1520.041     39.7     21     43
GO:0040007; P:growth; IMP:WormBase.::GO:0002119; P:nematode larval development; IMP:WormBase.
110Q9UTR9    368   ASA1_SCHPO ASTRA-associated protein 1 OS=Schi...1640.042     39.3     25     46GO:0070209; C:ASTRA complex; IDA:PomBase.::GO:0005829; C:cytosol; IDA:PomBase.
GO:0016568; P:chromatin modification; IEA:UniProtKB-KW.
111Q2HJH6    358   SNR40_BOVIN U5 small nuclear ribonucleoprotei...930.25     37     33     43GO:0005681; C:spliceosomal complex; IEA:UniProtKB-KW.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.
112O75529    589   TAF5L_HUMAN TAF5-like RNA polymerase II p300/...480.043     39.7     38     58GO:0030914; C:STAGA complex; IDA:UniProtKB.::GO:0033276; C:transcription factor TFTC complex; IDA:UniProtKB.
GO:0003700; F:sequence-specific DNA binding transcription factor activity; TAS:ProtInc.::GO:0003713; F:transcription coactivator activity; IDA:UniProtKB.
GO:0043966; P:histone H3 acetylation; IDA:UniProtKB.::GO:0006366; P:transcription from RNA polymerase II promoter; TAS:ProtInc.
113Q96DI7    357   SNR40_HUMAN U5 small nuclear ribonucleoprotei...930.28     37     33     43GO:0071013; C:catalytic step 2 spliceosome; IDA:UniProtKB.::GO:0005737; C:cytoplasm; IDA:HPA.::GO:0005654; C:nucleoplasm; TAS:Reactome.::GO:0005732; C:small nucleolar ribonucleoprotein complex; NAS:UniProtKB.::GO:0005682; C:U5 snRNP; TAS:ProtInc.
GO:0005515; F:protein binding; IPI:IntAct.
GO:0000398; P:nuclear mRNA splicing, via spliceosome; IC:UniProtKB.
114Q7ZVF0    416   POC1A_DANRE POC1 centriolar protein homolog A...1057.4     32.3     22     44
115Q99M63    513   SMU1_RAT WD40 repeat-containing protein SMU1 ...1270.046     39.7     27     44GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
116P78706    604   RCO1_NEUCR Transcriptional repressor rco-1 OS...1330.046     39.7     26     44
GO:0048315; P:conidium formation; IEA:UniProtKB-KW.::GO:0006355; P:regulation of transcription, DNA-dependent; IEA:UniProtKB-KW.::GO:0030435; P:sporulation resulting in formation of a cellular spore; IEA:UniProtKB-KW.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW.
117Q6NRT3    513   SMU1_XENLA WD40 repeat-containing protein SMU...1270.048     39.3     27     44GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
118Q3UKJ7    513   SMU1_MOUSE WD40 repeat-containing protein SMU...1270.048     39.3     27     44GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
119Q2TAY7    513   SMU1_HUMAN WD40 repeat-containing protein SMU...1270.048     39.3     27     44GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
120Q76B40    513   SMU1_CRIGR WD40 repeat-containing protein SMU...1270.048     39.3     27     44GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
121Q2TBS9    513   SMU1_BOVIN WD40 repeat-containing protein SMU...1270.048     39.3     27     44GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
records
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