Fungal Genome Collection
University of Nebraska Lincoln
School of Biological Sciences and Center for Plant Science Innovation
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UniProt_SwissProt BLAST: Single locus
Species:
Saccharomyces cerevisiae S288C
Locus:
YGL213C
Length:
397
Number of sequences:
5887
Description:
YGL213C SKI8 SGDID:S000003181, Chr VII from 91247-90054, Genome Release 64-1-1, reverse complement, Verified ORF, "Ski complex component and WD-repeat protein, mediates 3'-5' RNA degradation by the cytoplasmic exosome; also required for meiotic double-strand break recombination; null mutants have superkiller phenotype"
rec.SubjectHit LengthDescriptionAlign.LenE valueBit score% ident.  % pos.GO associations
391P52287    340   GBB3_RAT Guanine nucleotide-binding protein G...1205     32.7     27     43
GO:0004871; F:signal transducer activity; IEA:UniProtKB-KW.
392P32479    840   HIR1_YEAST Protein HIR1 OS=Saccharomyces cere...1705.2     33.1     24     37GO:0000775; C:chromosome, centromeric region; IDA:SGD.::GO:0000417; C:HIR complex; IDA:SGD.
GO:0003682; F:chromatin binding; IEA:InterPro.::GO:0042802; F:identical protein binding; IPI:IntAct.::GO:0003714; F:transcription corepressor activity; IDA:SGD.
GO:0016568; P:chromatin modification; IEA:UniProtKB-KW.::GO:0006336; P:DNA replication-independent nucleosome assembly; IDA:SGD.::GO:0006357; P:regulation of transcription from RNA polymerase II promoter; IDA:SGD.::GO:0006368; P:transcription elongation from RNA polymerase II promoter; IGI:SGD.
393Q6GPU3    711   DTLB_XENLA Denticleless protein homolog B OS=...1345.3     33.1     25     40GO:0005813; C:centrosome; ISS:UniProtKB.::GO:0031464; C:Cul4A-RING ubiquitin ligase complex; ISS:UniProtKB.::GO:0031465; C:Cul4B-RING ubiquitin ligase complex; ISS:UniProtKB.::GO:0005634; C:nucleus; ISS:UniProtKB.
GO:0006260; P:DNA replication; IEA:UniProtKB-KW.::GO:0031572; P:G2/M transition DNA damage checkpoint; ISS:UniProtKB.::GO:0006513; P:protein monoubiquitination; ISS:UniProtKB.::GO:0000209; P:protein polyubiquitination; ISS:UniProtKB.::GO:0009411; P:response to UV; ISS:UniProtKB.::GO:0019985; P:translesion synthesis; ISS:UniProtKB.::GO:0006511; P:ubiquitin-dependent protein catabolic process; ISS:UniProtKB.
394A3LUK5    613   DUS3_PICST tRNA-dihydrouridine(47) synthase [...955.3     33.1     26     48GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0050660; F:flavin adenine dinucleotide binding; IEA:InterPro.::GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.::GO:0017150; F:tRNA dihydrouridine synthase activity; IEA:InterPro.
GO:0008033; P:tRNA processing; IEA:UniProtKB-KW.
395P93398    377   GBB2_TOBAC Guanine nucleotide-binding protein...1185.3     32.7     23     42
GO:0004871; F:signal transducer activity; IEA:UniProtKB-KW.
396Q55FR9    1221   COPA_DICDI Coatomer subunit alpha OS=Dictyost...615.4     33.1     26     56GO:0030126; C:COPI vesicle coat; IEA:InterPro.
GO:0005198; F:structural molecule activity; IEA:InterPro.
GO:0006886; P:intracellular protein transport; IEA:InterPro.
397Q5UQT6    526   YL344_MIMIV Uncharacterized WD repeat-contain...495.4     32.7     29     59
398Q5ZLL7    751   WDR91_CHICK WD repeat-containing protein 91 O...2305.4     33.1     22     39
399Q68FJ6    363   PK1IP_XENLA p21-activated protein kinase-inte...1235.5     32.7     25     46GO:0005730; C:nucleolus; IEA:UniProtKB-SubCell.
GO:0009968; P:negative regulation of signal transduction; IEA:UniProtKB-KW.
400B3S4I5    409   LIS1_TRIAD Lissencephaly-1 homolog OS=Trichop...1518.2     32.3     23     42GO:0005874; C:microtubule; IEA:UniProtKB-KW.::GO:0005815; C:microtubule organizing center; IEA:UniProtKB-SubCell.
GO:0051301; P:cell division; IEA:UniProtKB-KW.::GO:0007067; P:mitosis; IEA:UniProtKB-KW.::GO:0006810; P:transport; IEA:UniProtKB-KW.
401O74855    502   NLE1_SCHPO Ribosome assembly protein C18.05c ...565.6     32.7     30     46GO:0005730; C:nucleolus; ISS:PomBase.::GO:0043234; C:protein complex; NAS:PomBase.
GO:0042254; P:ribosome biogenesis; ISS:PomBase.
402B7PS00    411   LIS1_IXOSC Lissencephaly-1 homolog OS=Ixodes ...445.6     32.7     34     52GO:0005874; C:microtubule; IEA:UniProtKB-KW.::GO:0005815; C:microtubule organizing center; IEA:UniProtKB-SubCell.
GO:0051301; P:cell division; IEA:UniProtKB-KW.::GO:0007067; P:mitosis; IEA:UniProtKB-KW.::GO:0006810; P:transport; IEA:UniProtKB-KW.
403Q12024    460   YTM1_YEAST Ribosome biogenesis protein YTM1 O...365.6     32.7     36     56GO:0005654; C:nucleoplasm; IEA:UniProtKB-SubCell.::GO:0070545; C:PeBoW complex; IDA:SGD.::GO:0030687; C:preribosome, large subunit precursor; IDA:SGD.
GO:0005515; F:protein binding; IPI:IntAct.
GO:0051276; P:chromosome organization; IGI:SGD.::GO:0042273; P:ribosomal large subunit biogenesis; IMP:SGD.::GO:0006364; P:rRNA processing; IEA:UniProtKB-KW.
404A6ZPA9    460   YTM1_YEAS7 Ribosome biogenesis protein YTM1 O...365.6     32.7     36     56GO:0005730; C:nucleolus; IEA:UniProtKB-SubCell.::GO:0005654; C:nucleoplasm; IEA:UniProtKB-SubCell.
GO:0006364; P:rRNA processing; IEA:UniProtKB-KW.
405Q6BLS5    466   YTM1_DEBHA Ribosome biogenesis protein YTM1 O...1545.6     32.7     22     45GO:0005730; C:nucleolus; IEA:UniProtKB-SubCell.::GO:0005654; C:nucleoplasm; IEA:UniProtKB-SubCell.
GO:0006364; P:rRNA processing; IEA:UniProtKB-KW.
406A8PT44    528   YTM1_MALGO Ribosome biogenesis protein YTM1 O...465.8     32.7     41     52GO:0005730; C:nucleolus; IEA:UniProtKB-SubCell.::GO:0005654; C:nucleoplasm; IEA:UniProtKB-SubCell.
GO:0006364; P:rRNA processing; IEA:UniProtKB-KW.
407Q6TNS2    368   PK1IP_DANRE p21-activated protein kinase-inte...1465.8     32.7     24     45GO:0005730; C:nucleolus; IEA:UniProtKB-SubCell.
GO:0009968; P:negative regulation of signal transduction; IEA:UniProtKB-KW.
408B8NGT5    706   SCONB_ASPFN Probable E3 ubiquitin ligase comp...1646.1     32.7     23     40
GO:0006355; P:regulation of transcription, DNA-dependent; IEA:UniProtKB-KW.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW.
409Q2UFN8    705   SCONB_ASPOR Probable E3 ubiquitin ligase comp...1646.2     32.7     23     40
GO:0006355; P:regulation of transcription, DNA-dependent; IEA:UniProtKB-KW.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW.
410Q8BQM8    1977   EMAL5_MOUSE Echinoderm microtubule-associated...836.2     33.1     25     51GO:0005737; C:cytoplasm; IEA:UniProtKB-KW.::GO:0005874; C:microtubule; IEA:UniProtKB-KW.
411O45040    340   GBB1_HOMAM Guanine nucleotide-binding protein...1196.2     32.3     25     43
GO:0004871; F:signal transducer activity; IEA:UniProtKB-KW.
412Q7T394    410   LIS1A_DANRE Lissencephaly-1 homolog A OS=Dani...458.1     32.3     33     47GO:0005874; C:microtubule; IEA:UniProtKB-KW.::GO:0005815; C:microtubule organizing center; IEA:UniProtKB-SubCell.
GO:0048854; P:brain morphogenesis; IMP:ZFIN.::GO:0030154; P:cell differentiation; IEA:UniProtKB-KW.::GO:0051301; P:cell division; IEA:UniProtKB-KW.::GO:0007067; P:mitosis; IEA:UniProtKB-KW.::GO:0006810; P:transport; IEA:UniProtKB-KW.
413Q9LJR3    845   SPA3_ARATH Protein SPA1-RELATED 3 OS=Arabidop...1586.3     32.7     23     44GO:0080008; C:CUL4 RING ubiquitin ligase complex; ISS:TAIR.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0005524; F:ATP binding; IEA:InterPro.::GO:0042802; F:identical protein binding; IPI:IntAct.::GO:0004672; F:protein kinase activity; IEA:InterPro.
GO:0009585; P:red, far-red light phototransduction; IEA:UniProtKB-KW.
414Q5U4D9    341   THOC6_MOUSE THO complex subunit 6 homolog OS=...596.4     32.3     24     47
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.
415B4KE10    506   WDR55_DROMO WD repeat-containing protein 55 h...326.4     32.7     44     63
416B5X3Z6    410   LIS1A_SALSA Lissencephaly-1 homolog A OS=Salm...446.5     32.7     34     48GO:0005874; C:microtubule; IEA:UniProtKB-KW.::GO:0005815; C:microtubule organizing center; IEA:UniProtKB-SubCell.
GO:0030154; P:cell differentiation; IEA:UniProtKB-KW.::GO:0051301; P:cell division; IEA:UniProtKB-KW.::GO:0007067; P:mitosis; IEA:UniProtKB-KW.::GO:0007399; P:nervous system development; IEA:UniProtKB-KW.::GO:0006810; P:transport; IEA:UniProtKB-KW.
417Q9SJT9    1218   COPA2_ARATH Coatomer subunit alpha-2 OS=Arabi...1066.5     32.7     26     40GO:0030126; C:COPI vesicle coat; IEA:InterPro.::GO:0005829; C:cytosol; IDA:TAIR.
GO:0005198; F:structural molecule activity; IEA:InterPro.
GO:0006886; P:intracellular protein transport; IEA:InterPro.::GO:0016192; P:vesicle-mediated transport; IEA:UniProtKB-KW.
418Q9VAT2    621   DCA10_DROME DDB1- and CUL4-associated factor ...356.6     32.7     31     66
419C5MJE8    490   LIS1_CANTT Nuclear distribution protein PAC1 ...376.6     32.7     41     62GO:0005737; C:cytoplasm; IEA:UniProtKB-KW.::GO:0005874; C:microtubule; IEA:UniProtKB-KW.::GO:0000922; C:spindle pole; IEA:UniProtKB-SubCell.
GO:0051301; P:cell division; IEA:UniProtKB-KW.::GO:0007067; P:mitosis; IEA:UniProtKB-KW.::GO:0006810; P:transport; IEA:UniProtKB-KW.
420Q5ZIU8    657   KTNB1_CHICK Katanin p80 WD40-containing subun...916.7     32.7     25     47GO:0005874; C:microtubule; IEA:UniProtKB-KW.::GO:0005815; C:microtubule organizing center; IEA:UniProtKB-SubCell.::GO:0000922; C:spindle pole; IEA:UniProtKB-SubCell.
GO:0051301; P:cell division; IEA:UniProtKB-KW.::GO:0007067; P:mitosis; IEA:UniProtKB-KW.
421A1DHK2    1263   SEC31_NEOFI Protein transport protein sec31 O...1436.7     32.7     24     41GO:0005789; C:endoplasmic reticulum membrane; IEA:UniProtKB-SubCell.::GO:0012507; C:ER to Golgi transport vesicle membrane; IEA:UniProtKB-SubCell.
GO:0015031; P:protein transport; IEA:UniProtKB-KW.::GO:0016192; P:vesicle-mediated transport; IEA:UniProtKB-KW.
records
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