Fungal Genome Collection
University of Nebraska Lincoln
School of Biological Sciences and Center for Plant Science Innovation
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UniProt_SwissProt BLAST: Single locus
Species:
Saccharomyces cerevisiae S288C
Locus:
YGL213C
Length:
397
Number of sequences:
5887
Description:
YGL213C SKI8 SGDID:S000003181, Chr VII from 91247-90054, Genome Release 64-1-1, reverse complement, Verified ORF, "Ski complex component and WD-repeat protein, mediates 3'-5' RNA degradation by the cytoplasmic exosome; also required for meiotic double-strand break recombination; null mutants have superkiller phenotype"
rec.SubjectHit LengthDescriptionAlign.LenE valueBit score% ident.  % pos.GO associations
331P49026    326   GBLP_TOBAC Guanine nucleotide-binding protein...1272.2     33.9     28     47
332Q40687    380   GBB_ORYSJ Guanine nucleotide-binding protein ...1272.2     33.9     23     42
GO:0005515; F:protein binding; IPI:IntAct.::GO:0004871; F:signal transducer activity; IEA:UniProtKB-KW.
GO:0007186; P:G-protein coupled receptor signaling pathway; IEP:Gramene.
333Q5NVD0    521   PRP4_PONAB U4/U6 small nuclear ribonucleoprot...2152.3     34.3     25     39GO:0016607; C:nuclear speck; IEA:UniProtKB-SubCell.::GO:0005681; C:spliceosomal complex; IEA:UniProtKB-KW.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.
334A0JMQ0    777   BOP1_DANRE Ribosome biogenesis protein bop1 O...482.3     34.3     40     56GO:0005654; C:nucleoplasm; IEA:UniProtKB-SubCell.::GO:0070545; C:PeBoW complex; ISS:UniProtKB.
GO:0000463; P:maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA); ISS:UniProtKB.::GO:0051726; P:regulation of cell cycle; ISS:UniProtKB.
335B2RYI0    747   WDR91_RAT WD repeat-containing protein 91 OS=...2382.3     34.3     23     40
336Q6L4F8    336   GBLPB_ORYSJ Guanine nucleotide-binding protei...482.3     33.9     31     46
GO:0004871; F:signal transducer activity; IEA:UniProtKB-KW.
337Q38942    349   RAE1L_ARATH Rae1-like protein At1g80670 OS=Ar...378.3     32     38     59GO:0080008; C:CUL4 RING ubiquitin ligase complex; IPI:TAIR.::GO:0005829; C:cytosol; IDA:TAIR.::GO:0005635; C:nuclear envelope; IDA:TAIR.
GO:0005515; F:protein binding; IPI:TAIR.
338A7S338    409   LIS1_NEMVE Lissencephaly-1 homolog OS=Nematos...442.6     33.9     36     50GO:0005874; C:microtubule; IEA:UniProtKB-KW.::GO:0005815; C:microtubule organizing center; IEA:UniProtKB-SubCell.
GO:0051301; P:cell division; IEA:UniProtKB-KW.::GO:0007067; P:mitosis; IEA:UniProtKB-KW.::GO:0006810; P:transport; IEA:UniProtKB-KW.
339O76734    579   TUP1_DICDI General transcriptional corepresso...1222.7     33.9     24     43GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0006355; P:regulation of transcription, DNA-dependent; IEA:UniProtKB-KW.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW.
340B8PD53    427   LIS12_POSPM Nuclear distribution protein PAC1...542.8     33.9     31     48GO:0005737; C:cytoplasm; IEA:UniProtKB-KW.::GO:0005874; C:microtubule; IEA:UniProtKB-KW.::GO:0000922; C:spindle pole; IEA:UniProtKB-SubCell.
GO:0051301; P:cell division; IEA:UniProtKB-KW.::GO:0007067; P:mitosis; IEA:UniProtKB-KW.::GO:0006810; P:transport; IEA:UniProtKB-KW.
341P49178    380   GBB_MAIZE Guanine nucleotide-binding protein ...1208.9     32     27     39
GO:0004871; F:signal transducer activity; IEA:UniProtKB-KW.
342Q1DHE1    1061   HIR1_COCIM Protein HIR1 OS=Coccidioides immit...1622.9     33.9     25     41GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0003682; F:chromatin binding; IEA:InterPro.
GO:0016568; P:chromatin modification; IEA:UniProtKB-KW.::GO:0006355; P:regulation of transcription, DNA-dependent; IEA:UniProtKB-KW.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW.
343A1CF18    435   LIS12_ASPCL Nuclear distribution protein nudF...1052.9     33.9     22     43GO:0005737; C:cytoplasm; IEA:UniProtKB-KW.::GO:0005874; C:microtubule; IEA:UniProtKB-KW.::GO:0000922; C:spindle pole; IEA:UniProtKB-SubCell.
GO:0051301; P:cell division; IEA:UniProtKB-KW.::GO:0007067; P:mitosis; IEA:UniProtKB-KW.::GO:0006810; P:transport; IEA:UniProtKB-KW.
344Q8SRB0    334   GBLP_ENCCU Guanine nucleotide-binding protein...432.9     33.5     30     63
345Q9NDC9    404   LIS1_CAEEL Lissencephaly-1 homolog OS=Caenorh...452.9     33.5     31     51GO:0005818; C:aster; IDA:WormBase.::GO:0005938; C:cell cortex; IDA:WormBase.::GO:0000777; C:condensed chromosome kinetochore; IEA:UniProtKB-SubCell.::GO:0005874; C:microtubule; IDA:WormBase.::GO:0005815; C:microtubule organizing center; IEA:UniProtKB-SubCell.::GO:0048471; C:perinuclear region of cytoplasm; IDA:WormBase.
GO:0005515; F:protein binding; IPI:WormBase.
GO:0030154; P:cell differentiation; IEA:UniProtKB-KW.::GO:0051301; P:cell division; IEA:UniProtKB-KW.::GO:0051026; P:chiasma assembly; IMP:WormBase.::GO:0009792; P:embryo development ending in birth or egg hatching; IMP:WormBase.::GO:0043652; P:engulfment of apoptotic cell; IMP:WormBase.::GO:0000132; P:establishment of mitotic spindle orientation; IMP:WormBase.::GO:0040011; P:locomotion; IMP:WormBase.::GO:0007018; P:microtubule-based movement; IMP:WormBase.::GO:0007100; P:mitotic centrosome separation; IMP:WormBase.::GO:0007052; P:mitotic spindle organization; IMP:WormBase.::GO:0007399; P:nervous system development; IEA:UniProtKB-KW.::GO:0048477; P:oogenesis; IEA:UniProtKB-KW.::GO:0035046; P:pronuclear migration; IMP:WormBase.::GO:0051225; P:spindle assembly; IMP:WormBase.::GO:0051932; P:synaptic transmission, GABAergic; IMP:WormBase.::GO:0048489; P:synaptic vesicle transport; IMP:WormBase.::GO:0040025; P:vulval development; IMP:WormBase.
346P25387    318   GBLP_CHLRE Guanine nucleotide-binding protein...2233     33.5     22     38
347Q54DM1    331   BUB3_DICDI Mitotic checkpoint protein bub3 OS...583     33.5     24     52GO:0000776; C:kinetochore; ISS:dictyBase.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0051301; P:cell division; IEA:UniProtKB-KW.::GO:0007067; P:mitosis; IEA:UniProtKB-KW.::GO:0007093; P:mitotic cell cycle checkpoint; ISS:dictyBase.
348C9STX5    404   ASA1_VERA1 ASTRA-associated protein 1 OS=(Ver...373     33.5     35     49GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0016568; P:chromatin modification; IEA:UniProtKB-KW.
349P90587    601   WD66_PHYPO 66 kDa stress protein OS=Physarum ...1313.1     33.9     22     45
350O55106    780   STRN_MOUSE Striatin OS=Mus musculus (Mouse). ...2183.1     33.9     23     38GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0005516; F:calmodulin binding; IEA:UniProtKB-KW.
351Q6ED65    1977   EMAL5_RAT Echinoderm microtubule-associated p...833.5     33.9     25     52GO:0005737; C:cytoplasm; IEA:UniProtKB-KW.::GO:0005874; C:microtubule; IEA:UniProtKB-KW.
352A7TMF9    453   YTM1_VANPO Ribosome biogenesis protein YTM1 O...1173.5     33.5     31     48GO:0005730; C:nucleolus; IEA:UniProtKB-SubCell.::GO:0005654; C:nucleoplasm; IEA:UniProtKB-SubCell.
GO:0006364; P:rRNA processing; IEA:UniProtKB-KW.
353B0XAF3    338   CIAO1_CULQU Probable cytosolic iron-sulfur pr...2083.5     33.1     25     40
GO:0016226; P:iron-sulfur cluster assembly; ISS:UniProtKB.
354O13286    556   SRW1_SCHPO WD repeat-containing protein srw1 ...1733.5     33.5     23     45GO:0005634; C:nucleus; IDA:PomBase.::GO:0043234; C:protein complex; NAS:PomBase.
GO:0007092; P:activation of mitotic anaphase-promoting complex activity; TAS:PomBase.::GO:0030996; P:cell cycle arrest in response to nitrogen starvation; IMP:PomBase.::GO:0008054; P:cyclin catabolic process; IMP:PomBase.::GO:0045736; P:negative regulation of cyclin-dependent protein kinase activity; IC:PomBase.::GO:0031137; P:regulation of conjugation with cellular fusion; IMP:PomBase.
355C5BHC1    399   DXR_EDWI9 1-deoxy-D-xylulose 5-phosphate redu...513.5     33.5     29     47
GO:0030604; F:1-deoxy-D-xylulose-5-phosphate reductoisomerase activity; IEA:EC.::GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.::GO:0070402; F:NADPH binding; IEA:InterPro.
GO:0008299; P:isoprenoid biosynthetic process; IEA:UniProtKB-KW.
356A4D1P6    747   WDR91_HUMAN WD repeat-containing protein 91 O...2133.6     33.5     21     39
357A2QCU8    670   SCONB_ASPNC Probable E3 ubiquitin ligase comp...493.6     33.5     31     53
GO:0006355; P:regulation of transcription, DNA-dependent; IEA:UniProtKB-KW.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW.
358Q6CKE8    434   PRP46_KLULA Pre-mRNA-splicing factor PRP46 OS...1463.6     33.5     23     43GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0005681; C:spliceosomal complex; IEA:UniProtKB-KW.
GO:0007049; P:cell cycle; IEA:UniProtKB-KW.::GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.
359Q6PH57    340   GBB1_DANRE Guanine nucleotide-binding protein...1193.6     33.1     24     41
GO:0004871; F:signal transducer activity; IEA:UniProtKB-KW.
360B8P4B0    438   LIS11_POSPM Nuclear distribution protein PAC1...1013.6     33.5     27     40GO:0005737; C:cytoplasm; IEA:UniProtKB-KW.::GO:0005874; C:microtubule; IEA:UniProtKB-KW.::GO:0000922; C:spindle pole; IEA:UniProtKB-SubCell.
GO:0051301; P:cell division; IEA:UniProtKB-KW.::GO:0007067; P:mitosis; IEA:UniProtKB-KW.::GO:0006810; P:transport; IEA:UniProtKB-KW.
361A1C7E4    700   SCONB_ASPCL Probable E3 ubiquitin ligase comp...1673.7     33.5     25     41
GO:0006355; P:regulation of transcription, DNA-dependent; IEA:UniProtKB-KW.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW.
records
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