Fungal Genome Collection
University of Nebraska Lincoln
School of Biological Sciences and Center for Plant Science Innovation
Home About FGC Use Cases Species List

UniProt_SwissProt BLAST: Single locus
Species:
Saccharomyces cerevisiae S288C
Locus:
YGL213C
Length:
397
Number of sequences:
5887
Description:
YGL213C SKI8 SGDID:S000003181, Chr VII from 91247-90054, Genome Release 64-1-1, reverse complement, Verified ORF, "Ski complex component and WD-repeat protein, mediates 3'-5' RNA degradation by the cytoplasmic exosome; also required for meiotic double-strand break recombination; null mutants have superkiller phenotype"
rec.SubjectHit LengthDescriptionAlign.LenE valueBit score% ident.  % pos.GO associations
271Q3MHE2    521   PRP4_BOVIN U4/U6 small nuclear ribonucleoprot...2170.88     35.4     25     39GO:0016607; C:nuclear speck; IEA:UniProtKB-SubCell.::GO:0005681; C:spliceosomal complex; IEA:UniProtKB-KW.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.
272P87060    775   POP1_SCHPO WD repeat-containing protein pop1 ...440.89     35.4     36     59GO:0005634; C:nucleus; IDA:PomBase.::GO:0019005; C:SCF ubiquitin ligase complex; IDA:PomBase.
GO:0030674; F:protein binding, bridging; IPI:PomBase.
GO:0006995; P:cellular response to nitrogen starvation; IGI:PomBase.::GO:0000747; P:conjugation with cellular fusion; IMP:PomBase.::GO:0008054; P:cyclin catabolic process; IMP:PomBase.::GO:0007346; P:regulation of mitotic cell cycle; IC:PomBase.
273B6QC56    459   LIS11_PENMQ Nuclear distribution protein nudF...1026.6     32.7     23     45GO:0005737; C:cytoplasm; IEA:UniProtKB-KW.::GO:0005874; C:microtubule; IEA:UniProtKB-KW.::GO:0000922; C:spindle pole; IEA:UniProtKB-SubCell.
GO:0051301; P:cell division; IEA:UniProtKB-KW.::GO:0007067; P:mitosis; IEA:UniProtKB-KW.::GO:0006810; P:transport; IEA:UniProtKB-KW.
274Q54MT0    331   EIF3I_DICDI Eukaryotic translation initiation...1950.89     35     24     39GO:0005852; C:eukaryotic translation initiation factor 3 complex; ISS:dictyBase.::GO:0045335; C:phagocytic vesicle; IDA:dictyBase.
GO:0003743; F:translation initiation factor activity; IEA:UniProtKB-KW.
GO:0006446; P:regulation of translational initiation; ISS:dictyBase.
275Q9UM11    496   FZR_HUMAN Fizzy-related protein homolog OS=Ho...1610.9     35.4     21     43GO:0005829; C:cytosol; TAS:Reactome.::GO:0005654; C:nucleoplasm; TAS:Reactome.
GO:0005515; F:protein binding; IPI:UniProtKB.
GO:0051488; P:activation of anaphase-promoting complex activity; IDA:UniProtKB.::GO:0031145; P:anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process; IDA:UniProtKB.::GO:0051301; P:cell division; IEA:UniProtKB-KW.::GO:0006281; P:DNA repair; IEA:UniProtKB-KW.::GO:0031572; P:G2/M transition DNA damage checkpoint; IDA:UniProtKB.::GO:0007067; P:mitosis; IEA:UniProtKB-KW.::GO:0051436; P:negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle; TAS:Reactome.::GO:0045732; P:positive regulation of protein catabolic process; IGI:UniProtKB.::GO:0051437; P:positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle; TAS:Reactome.::GO:0070979; P:protein K11-linked ubiquitination; TAS:UniProtKB.::GO:0000084; P:S phase of mitotic cell cycle; TAS:Reactome.
276Q4P8R5    814   MDV1_USTMA Mitochondrial division protein 1 O...560.91     35.4     30     54GO:0005741; C:mitochondrial outer membrane; IEA:UniProtKB-SubCell.
277Q6C709    441   PRP46_YARLI Pre-mRNA-splicing factor PRP46 OS...480.91     35.4     35     54GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0005681; C:spliceosomal complex; IEA:UniProtKB-KW.
GO:0007049; P:cell cycle; IEA:UniProtKB-KW.::GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.
278O16023    428   ESC_MUSDO Polycomb protein esc OS=Musca domes...1270.93     35.4     24     45GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0007275; P:multicellular organismal development; IEA:UniProtKB-KW.::GO:0006355; P:regulation of transcription, DNA-dependent; IEA:UniProtKB-KW.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW.
279O43172    522   PRP4_HUMAN U4/U6 small nuclear ribonucleoprot...2170.96     35.4     25     39GO:0015030; C:Cajal body; IDA:BHF-UCL.::GO:0016607; C:nuclear speck; IEA:UniProtKB-SubCell.::GO:0005681; C:spliceosomal complex; NAS:UniProtKB.::GO:0071001; C:U4/U6 snRNP; IDA:BHF-UCL.
GO:0005515; F:protein binding; IPI:BHF-UCL.
GO:0000398; P:nuclear mRNA splicing, via spliceosome; IC:BHF-UCL.
280D5GBI7    452   LIS1_TUBMM Nuclear distribution protein PAC1 ...1171.3     34.7     22     42GO:0005737; C:cytoplasm; IEA:UniProtKB-KW.::GO:0005874; C:microtubule; IEA:UniProtKB-KW.::GO:0000922; C:spindle pole; IEA:UniProtKB-SubCell.
GO:0051301; P:cell division; IEA:UniProtKB-KW.::GO:0007067; P:mitosis; IEA:UniProtKB-KW.::GO:0006810; P:transport; IEA:UniProtKB-KW.
281O13282    643   TAF5_SCHPO Transcription initiation factor TF...1066.9     32.7     22     41GO:0005829; C:cytosol; IDA:PomBase.::GO:0000124; C:SAGA complex; IDA:PomBase.::GO:0005669; C:transcription factor TFIID complex; IDA:PomBase.
GO:0005515; F:protein binding; IPI:PomBase.
GO:0006338; P:chromatin remodeling; IC:PomBase.::GO:0016573; P:histone acetylation; IC:PomBase.::GO:0006355; P:regulation of transcription, DNA-dependent; IEA:UniProtKB-KW.::GO:0006367; P:transcription initiation from RNA polymerase II promoter; IC:PomBase.
282Q39190    479   PRL2_ARATH Protein pleiotropic regulator PRL2...491     35     33     47GO:0080008; C:CUL4 RING ubiquitin ligase complex; ISS:TAIR.
GO:0005515; F:protein binding; IPI:TAIR.
283Q25306    312   GBLP_LEIMA Guanine nucleotide-binding protein...1401     35     24     44
284P0CS42    433   LIS1_CRYNJ Nuclear distribution protein PAC1 ...1261.3     34.7     26     49GO:0005737; C:cytoplasm; IEA:UniProtKB-KW.::GO:0005874; C:microtubule; IEA:UniProtKB-KW.::GO:0000922; C:spindle pole; IEA:UniProtKB-SubCell.
GO:0051301; P:cell division; IEA:UniProtKB-KW.::GO:0007067; P:mitosis; IEA:UniProtKB-KW.::GO:0006810; P:transport; IEA:UniProtKB-KW.
285P0CS43    433   LIS1_CRYNB Nuclear distribution protein PAC1 ...1261.3     34.7     26     49GO:0005737; C:cytoplasm; IEA:UniProtKB-KW.::GO:0005874; C:microtubule; IEA:UniProtKB-KW.::GO:0000922; C:spindle pole; IEA:UniProtKB-SubCell.
GO:0051301; P:cell division; IEA:UniProtKB-KW.::GO:0007067; P:mitosis; IEA:UniProtKB-KW.::GO:0006810; P:transport; IEA:UniProtKB-KW.
286B6Q4Z5    660   SCONB_PENMQ Probable E3 ubiquitin ligase comp...1641     35.4     20     43
GO:0006355; P:regulation of transcription, DNA-dependent; IEA:UniProtKB-KW.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW.
287Q54S79    942   WDR3_DICDI WD repeat-containing protein 3 hom...451     35.4     36     51GO:0005730; C:nucleolus; IEA:UniProtKB-SubCell.
288P26308    340   GBB1_DROME Guanine nucleotide-binding protein...1191     35     27     44GO:0005875; C:microtubule associated complex; IDA:FlyBase.
GO:0004871; F:signal transducer activity; IEA:UniProtKB-KW.
GO:0007015; P:actin filament organization; IMP:FlyBase.::GO:0045176; P:apical protein localization; TAS:FlyBase.::GO:0055059; P:asymmetric neuroblast division; IMP:FlyBase.
289Q9FLX9    473   NLE1_ARATH Notchless protein homolog OS=Arabi...1381.1     35     23     40GO:0080008; C:CUL4 RING ubiquitin ligase complex; ISS:TAIR.::GO:0005730; C:nucleolus; IEA:UniProtKB-SubCell.
290A8XZJ9    390   LIS1_CAEBR Lissencephaly-1 homolog OS=Caenorh...1451.1     35     25     41GO:0005874; C:microtubule; IEA:UniProtKB-KW.::GO:0005815; C:microtubule organizing center; IEA:UniProtKB-SubCell.
GO:0051301; P:cell division; IEA:UniProtKB-KW.::GO:0007067; P:mitosis; IEA:UniProtKB-KW.::GO:0006810; P:transport; IEA:UniProtKB-KW.
291Q9DAW6    521   PRP4_MOUSE U4/U6 small nuclear ribonucleoprot...2171.1     35     25     39GO:0016607; C:nuclear speck; IEA:UniProtKB-SubCell.::GO:0005681; C:spliceosomal complex; IEA:UniProtKB-KW.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.
292P29387    340   GBB4_MOUSE Guanine nucleotide-binding protein...1191.1     35     26     42
GO:0004871; F:signal transducer activity; IEA:UniProtKB-KW.
GO:0007186; P:G-protein coupled receptor signaling pathway; TAS:MGI.
293P0CS38    881   HIR1_CRYNJ Protein HIR1 OS=ATCC MYA-565) (Fil...1421.1     35.4     26     45GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0016568; P:chromatin modification; IEA:UniProtKB-KW.::GO:0006355; P:regulation of transcription, DNA-dependent; IEA:UniProtKB-KW.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW.
294P0CS39    881   HIR1_CRYNB Protein HIR1 OS=(Filobasidiella ne...1421.1     35.4     26     45GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0016568; P:chromatin modification; IEA:UniProtKB-KW.::GO:0006355; P:regulation of transcription, DNA-dependent; IEA:UniProtKB-KW.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW.
295Q61011    340   GBB3_MOUSE Guanine nucleotide-binding protein...1201.2     34.7     28     44GO:0005834; C:heterotrimeric G-protein complex; TAS:MGI.
GO:0003924; F:GTPase activity; TAS:MGI.::GO:0004871; F:signal transducer activity; IEA:UniProtKB-KW.
GO:0007186; P:G-protein coupled receptor signaling pathway; TAS:MGI.
296Q6FVD3    840   HIR1_CANGA Protein HIR1 OS=NRRL Y-65) (Yeast)...1591.2     35     25     40GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0003682; F:chromatin binding; IEA:InterPro.
GO:0016568; P:chromatin modification; IEA:UniProtKB-KW.::GO:0006355; P:regulation of transcription, DNA-dependent; IEA:UniProtKB-KW.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW.
297Q6GM65    799   PLAP_XENLA Phospholipase A-2-activating prote...1331.3     35     31     44
GO:0005488; F:binding; IEA:InterPro.
298Q54KM3    754   CDH1_DICDI Anaphase-promoting complex subunit...1511.3     35     23     43GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0051301; P:cell division; IEA:UniProtKB-KW.::GO:0007067; P:mitosis; IEA:UniProtKB-KW.
299Q8BHB4    942   WDR3_MOUSE WD repeat-containing protein 3 OS=...631.3     35     38     44GO:0005730; C:nucleolus; IEA:UniProtKB-SubCell.
300Q2GSJ9    1080   HIR1_CHAGB Protein HIR1 OS=6347 / NRRL 1970) ...1131.3     35     25     42GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0003682; F:chromatin binding; IEA:InterPro.
GO:0016568; P:chromatin modification; IEA:UniProtKB-KW.::GO:0006355; P:regulation of transcription, DNA-dependent; IEA:UniProtKB-KW.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW.
301Q8VC03    897   EMAL3_MOUSE Echinoderm microtubule-associated...1381.4     35     28     43GO:0005737; C:cytoplasm; IEA:UniProtKB-KW.::GO:0005874; C:microtubule; IEA:UniProtKB-KW.
GO:0004252; F:serine-type endopeptidase activity; IEA:InterPro.
GO:0006508; P:proteolysis; IEA:InterPro.
records
Previous ‹‹ ›› Next Total records: 474 271 - 300
Elimate unknown annotation:
Filter for keyword on hit description:
Select upper E value:
Select lower bit score:
Select lower %idenity value:
Select lower %positive value:
Taxonomic division:
Lower limit on hit length:
Lower limit on alignment length::