Fungal Genome Collection
University of Nebraska Lincoln
School of Biological Sciences and Center for Plant Science Innovation
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UniProt_SwissProt BLAST: Single locus
Species:
Saccharomyces cerevisiae S288C
Locus:
YGL213C
Length:
397
Number of sequences:
5887
Description:
YGL213C SKI8 SGDID:S000003181, Chr VII from 91247-90054, Genome Release 64-1-1, reverse complement, Verified ORF, "Ski complex component and WD-repeat protein, mediates 3'-5' RNA degradation by the cytoplasmic exosome; also required for meiotic double-strand break recombination; null mutants have superkiller phenotype"
rec.SubjectHit LengthDescriptionAlign.LenE valueBit score% ident.  % pos.GO associations
181P0CS47    713   PFS2_CRYNB Polyadenylation factor subunit 2 O...1530.18     37.7     29     39GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0051301; P:cell division; IEA:UniProtKB-KW.::GO:0007059; P:chromosome segregation; IEA:UniProtKB-KW.::GO:0007067; P:mitosis; IEA:UniProtKB-KW.::GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.
182Q15269    919   PWP2_HUMAN Periodic tryptophan protein 2 homo...1390.18     37.7     26     45GO:0005737; C:cytoplasm; IDA:HPA.::GO:0005730; C:nucleolus; IDA:HPA.
GO:0004871; F:signal transducer activity; TAS:ProtInc.
183A8NEG8    434   LIS1_COPC7 Nuclear distribution protein PAC1 ...1150.95     35.4     22     43GO:0005737; C:cytoplasm; IEA:UniProtKB-KW.::GO:0005874; C:microtubule; IEA:UniProtKB-KW.::GO:0000922; C:spindle pole; IEA:UniProtKB-SubCell.
GO:0051301; P:cell division; IEA:UniProtKB-KW.::GO:0007067; P:mitosis; IEA:UniProtKB-KW.::GO:0006810; P:transport; IEA:UniProtKB-KW.
184Q6FLA4    805   ERB1_CANGA Ribosome biogenesis protein ERB1 O...630.2     37.7     35     63GO:0005730; C:nucleolus; IEA:UniProtKB-SubCell.::GO:0005654; C:nucleoplasm; IEA:UniProtKB-SubCell.
GO:0051726; P:regulation of cell cycle; IEA:InterPro.::GO:0006364; P:rRNA processing; IEA:UniProtKB-KW.
185C4YFX2    511   TUP1_CANAW Transcriptional repressor TUP1 OS=...1410.2     37.4     28     43
GO:0006355; P:regulation of transcription, DNA-dependent; IEA:UniProtKB-KW.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW.
186P0CY34    512   TUP1_CANAL Transcriptional repressor TUP1 OS=...1410.2     37.4     28     43GO:0005625; C:soluble fraction; IDA:CGD.
GO:0016337; P:cell-cell adhesion; IMP:CGD.::GO:0071280; P:cellular response to copper ion; IMP:CGD.::GO:0035690; P:cellular response to drug; IMP:CGD.::GO:0044409; P:entry into host; IMP:CGD.::GO:0051834; P:evasion or tolerance of defenses of other organism involved in symbiotic interaction; IMP:CGD.::GO:0030448; P:hyphal growth; IMP:CGD.::GO:0045827; P:negative regulation of isoprenoid metabolic process; IMP:CGD.::GO:0000122; P:negative regulation of transcription from RNA polymerase II promoter; IMP:CGD.::GO:0009405; P:pathogenesis; IMP:CGD.::GO:0009372; P:quorum sensing; IMP:CGD.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW.
187Q5RFQ3    918   PWP2_PONAB Periodic tryptophan protein 2 homo...1390.21     37.7     26     45GO:0005730; C:nucleolus; IEA:UniProtKB-SubCell.
188P70483    780   STRN_RAT Striatin OS=Rattus norvegicus (Rat)....2180.21     37.7     23     38GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0043025; C:neuronal cell body; IDA:RGD.::GO:0014069; C:postsynaptic density; IDA:RGD.::GO:0045211; C:postsynaptic membrane; IDA:RGD.
GO:0048306; F:calcium-dependent protein binding; NAS:RGD.::GO:0005516; F:calmodulin binding; IDA:RGD.
GO:0016358; P:dendrite development; IMP:RGD.::GO:0007626; P:locomotory behavior; IMP:RGD.
189Q4IBR4    1046   HIR1_GIBZE Protein HIR1 OS=(Wheat head blight...1440.22     37.4     25     41GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0003682; F:chromatin binding; IEA:InterPro.
GO:0016568; P:chromatin modification; IEA:UniProtKB-KW.::GO:0006355; P:regulation of transcription, DNA-dependent; IEA:UniProtKB-KW.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW.
190Q6BRR2    1265   SEC31_DEBHA Protein transport protein SEC31 O...1380.24     37.4     25     45GO:0005789; C:endoplasmic reticulum membrane; IEA:UniProtKB-SubCell.::GO:0012507; C:ER to Golgi transport vesicle membrane; IEA:UniProtKB-SubCell.
GO:0015031; P:protein transport; IEA:UniProtKB-KW.::GO:0016192; P:vesicle-mediated transport; IEA:UniProtKB-KW.
191Q54W52    463   WDR12_DICDI Ribosome biogenesis protein WDR12...540.24     37.4     35     61GO:0005730; C:nucleolus; ISS:dictyBase.::GO:0005654; C:nucleoplasm; IEA:UniProtKB-SubCell.
GO:0042273; P:ribosomal large subunit biogenesis; ISS:dictyBase.::GO:0006364; P:rRNA processing; IEA:UniProtKB-KW.
192O42860    320   BUB3_SCHPO Mitotic checkpoint protein bub3 OS...370.25     37     41     65GO:0000778; C:condensed nuclear chromosome kinetochore; IDA:PomBase.::GO:0033597; C:mitotic checkpoint complex; ISS:PomBase.
GO:0005515; F:protein binding; IPI:PomBase.
GO:0051301; P:cell division; IEA:UniProtKB-KW.::GO:0034613; P:cellular protein localization; IGI:PomBase.::GO:0007067; P:mitosis; IEA:UniProtKB-KW.::GO:0007094; P:mitotic cell cycle spindle assembly checkpoint; IMP:PomBase.
193Q86VZ2    330   WDR5B_HUMAN WD repeat-containing protein 5B O...1030.3     36.6     27     48
194Q55AR8    355   SNR40_DICDI U5 small nuclear ribonucleoprotei...570.26     37     35     54GO:0005681; C:spliceosomal complex; ISS:dictyBase.
GO:0000398; P:nuclear mRNA splicing, via spliceosome; IC:dictyBase.
195A5DTX3    953   SEC31_LODEL Protein transport protein SEC31 O...1400.26     37.4     27     47GO:0005789; C:endoplasmic reticulum membrane; IEA:UniProtKB-SubCell.::GO:0012507; C:ER to Golgi transport vesicle membrane; IEA:UniProtKB-SubCell.
GO:0015031; P:protein transport; IEA:UniProtKB-KW.::GO:0016192; P:vesicle-mediated transport; IEA:UniProtKB-KW.
196Q6ZMY6    472   WDR88_HUMAN WD repeat-containing protein 88 O...1180.26     37     28     41
197Q5RE95    330   WDR5B_PONAB WD repeat-containing protein 5B O...1030.31     36.6     27     48
198C3XVT5    406   LIS1_BRAFL Lissencephaly-1 homolog OS=Branchi...448.1     32.3     34     50GO:0005874; C:microtubule; IEA:UniProtKB-KW.::GO:0005815; C:microtubule organizing center; IEA:UniProtKB-SubCell.
GO:0051301; P:cell division; IEA:UniProtKB-KW.::GO:0007067; P:mitosis; IEA:UniProtKB-KW.::GO:0006810; P:transport; IEA:UniProtKB-KW.
199Q6ZMW3    1958   EMAL6_HUMAN Echinoderm microtubule-associated...840.29     37.4     32     46GO:0005737; C:cytoplasm; IEA:UniProtKB-KW.::GO:0005874; C:microtubule; IEA:UniProtKB-KW.
200A8XSW2    691   WDR48_CAEBR WD repeat-containing protein 48 h...400.29     37     43     55
201A8IR43    444   WDR12_CHLRE Ribosome biogenesis protein WDR12...860.29     37     27     51GO:0005730; C:nucleolus; IEA:UniProtKB-SubCell.::GO:0005654; C:nucleoplasm; IEA:UniProtKB-SubCell.
GO:0006364; P:rRNA processing; IEA:UniProtKB-KW.
202Q10990    490   CDT2_SCHPO Cell division cycle protein cdt2 O...970.29     37     31     45GO:0005634; C:nucleus; IDA:PomBase.
GO:0005515; F:protein binding; IPI:IntAct.
GO:0051301; P:cell division; IEA:UniProtKB-KW.::GO:0034613; P:cellular protein localization; IGI:PomBase.::GO:0000077; P:DNA damage checkpoint; IGI:PomBase.::GO:0006261; P:DNA-dependent DNA replication; IMP:PomBase.::GO:0007126; P:meiosis; IEA:UniProtKB-KW.::GO:0007067; P:mitosis; IEA:UniProtKB-KW.::GO:0033314; P:mitotic cell cycle DNA replication checkpoint; IGI:PomBase.::GO:0051443; P:positive regulation of ubiquitin-protein ligase activity; IMP:PomBase.::GO:0006279; P:premeiotic DNA replication; IMP:PomBase.::GO:0042787; P:protein ubiquitination involved in ubiquitin-dependent protein catabolic process; IMP:PomBase.
203Q9C270    899   PWP2_NEUCR Periodic tryptophan protein 2 homo...1644.8     33.1     22     43
204B0X2V9    670   WDR48_CULQU WD repeat-containing protein 48 h...1260.31     37     19     44
205P73594    326   Y1409_SYNY3 Uncharacterized WD repeat-contain...1120.34     36.6     30     42GO:0030288; C:outer membrane-bounded periplasmic space; IDA:UniProtKB.
206Q9UNX4    943   WDR3_HUMAN WD repeat-containing protein 3 OS=...2030.35     37     26     41GO:0031965; C:nuclear membrane; IDA:HPA.::GO:0005730; C:nucleolus; IDA:HPA.
207Q9R1K5    493   FZR_MOUSE Fizzy-related protein homolog OS=Mu...1680.35     36.6     21     43
GO:0005515; F:protein binding; IPI:IntAct.
GO:0051488; P:activation of anaphase-promoting complex activity; ISS:UniProtKB.::GO:0031145; P:anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process; ISS:UniProtKB.::GO:0051301; P:cell division; IEA:UniProtKB-KW.::GO:0006281; P:DNA repair; IEA:UniProtKB-KW.::GO:0031572; P:G2/M transition DNA damage checkpoint; ISS:UniProtKB.::GO:0070306; P:lens fiber cell differentiation; IMP:MGI.::GO:0007067; P:mitosis; IEA:UniProtKB-KW.::GO:0090344; P:negative regulation of cell aging; IMP:BHF-UCL.::GO:0008284; P:positive regulation of cell proliferation; IMP:BHF-UCL.::GO:0045732; P:positive regulation of protein catabolic process; ISS:UniProtKB.::GO:0040020; P:regulation of meiosis; IDA:MGI.
208Q9FMU5    546   UTP18_ARATH U3 small nucleolar RNA-associated...790.35     36.6     30     51GO:0080008; C:CUL4 RING ubiquitin ligase complex; ISS:TAIR.::GO:0005730; C:nucleolus; IEA:UniProtKB-SubCell.
GO:0006364; P:rRNA processing; IEA:UniProtKB-KW.
209P0CS49    473   PRP46_CRYNB Pre-mRNA-splicing factor PRP46 OS...480.36     36.6     35     54GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0005681; C:spliceosomal complex; IEA:UniProtKB-KW.
GO:0007049; P:cell cycle; IEA:UniProtKB-KW.::GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.
210Q54Y96    530   SMU1_DICDI WD40 repeat-containing protein smu...1591.4     34.7     21     38GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
211Q8VD65    1358   PI3R4_MOUSE Phosphoinositide 3-kinase regulat...920.36     37     28     48GO:0005770; C:late endosome; ISS:UniProtKB.
GO:0005524; F:ATP binding; IEA:UniProtKB-KW.::GO:0004674; F:protein serine/threonine kinase activity; IEA:UniProtKB-KW.
records
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