Fungal Genome Collection
University of Nebraska Lincoln
School of Biological Sciences and Center for Plant Science Innovation
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UniProt_SwissProt BLAST: Single locus
Species:
Saccharomyces cerevisiae S288C
Locus:
YGL173C
Length:
1528
Number of sequences:
5887
Description:
YGL173C XRN1 SGDID:S000003141, Chr VII from 180113-175527, Genome Release 64-1-1, reverse complement, Verified ORF, "Evolutionarily-conserved 5'-3' exonuclease component of cytoplasmic processing (P) bodies involved in mRNA decay; plays a role in microtubule-mediated processes, filamentous growth, ribosomal RNA maturation, and telomere maintenance"
rec.SubjectHit LengthDescriptionAlign.LenE valueBit score% ident.  % pos.GO associations
31Q4P149    1233   XRN2_USTMA 5'-3' exoribonuclease 2 OS=Ustilag...1941e-41     171     42     59GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0004534; F:5'-3' exoribonuclease activity; IEA:InterPro.::GO:0003676; F:nucleic acid binding; IEA:InterPro.::GO:0008270; F:zinc ion binding; IEA:InterPro.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0006355; P:regulation of transcription, DNA-dependent; IEA:UniProtKB-KW.::GO:0006364; P:rRNA processing; IEA:UniProtKB-KW.::GO:0006353; P:transcription termination, DNA-dependent; IEA:UniProtKB-KW.
32Q9QSK5    624   EXON_IIV6 Putative exonuclease 012L OS=Invert...1740.00003     52.8     22     41GO:0005622; C:intracellular; IEA:InterPro.
GO:0004527; F:exonuclease activity; IEA:UniProtKB-KW.::GO:0003676; F:nucleic acid binding; IEA:InterPro.
33Q197A1    560   EX0N_IIV3 Putative exonuclease 059L OS=Invert...1650.0000000000007     76.6     28     50GO:0005622; C:intracellular; IEA:InterPro.
GO:0004527; F:exonuclease activity; IEA:UniProtKB-KW.::GO:0003676; F:nucleic acid binding; IEA:InterPro.
34Q5UQ94    621   YR528_MIMIV Putative 5'-3' exonuclease R528 O...1000.024     42.7     30     45GO:0005622; C:intracellular; IEA:InterPro.::GO:0019012; C:virion; IEA:UniProtKB-SubCell.
GO:0004527; F:exonuclease activity; IEA:UniProtKB-KW.::GO:0003676; F:nucleic acid binding; IEA:InterPro.
35P47142    202   VPS25_YEAST Vacuolar protein-sorting-associat...631.8     35.8     32     51GO:0000814; C:ESCRT II complex; IDA:SGD.
GO:0005515; F:protein binding; IPI:IntAct.::GO:0005198; F:structural molecule activity; IMP:SGD.
GO:0000433; P:negative regulation of transcription from RNA polymerase II promoter by glucose; IMP:SGD.::GO:0006623; P:protein targeting to vacuole; IPI:SGD.::GO:0043162; P:ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway; IC:SGD.
36Q5JRA6    1907   MIA3_HUMAN Melanoma inhibitory activity prote...695.9     35.4     33     45GO:0005789; C:endoplasmic reticulum membrane; IDA:UniProtKB.::GO:0016021; C:integral to membrane; IDA:UniProtKB.
GO:0005515; F:protein binding; IPI:UniProtKB.
GO:0006887; P:exocytosis; IMP:UniProtKB.::GO:0007162; P:negative regulation of cell adhesion; IDA:BHF-UCL.::GO:0030336; P:negative regulation of cell migration; IDA:BHF-UCL.::GO:0002687; P:positive regulation of leukocyte migration; IDA:BHF-UCL.::GO:0015031; P:protein transport; IMP:UniProtKB.::GO:0042060; P:wound healing; IDA:BHF-UCL.
37B0S2E5    1202   RPOC_FINM2 DNA-directed RNA polymerase subuni...1326.1     35     25     45
GO:0003677; F:DNA binding; IEA:InterPro.::GO:0003899; F:DNA-directed RNA polymerase activity; IEA:UniProtKB-KW.
38F6HQ26    213   RU1C_VITVI U1 small nuclear ribonucleoprotein...707     33.9     34     37GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.::GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW.
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.::GO:0008270; F:zinc ion binding; IEA:InterPro.
39Q4FYU7    395   FEN1_LEIMA Flap endonuclease 1 OS=Leishmania ...1668.9     34.3     25     41GO:0005739; C:mitochondrion; IEA:UniProtKB-SubCell.::GO:0005730; C:nucleolus; IEA:UniProtKB-SubCell.::GO:0005654; C:nucleoplasm; IEA:UniProtKB-SubCell.
GO:0003677; F:DNA binding; IEA:InterPro.::GO:0004519; F:endonuclease activity; IEA:UniProtKB-KW.::GO:0004527; F:exonuclease activity; IEA:UniProtKB-KW.::GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
GO:0006281; P:DNA repair; IEA:UniProtKB-KW.::GO:0006260; P:DNA replication; IEA:UniProtKB-KW.
40B2G687    172   ATPF_LACRJ ATP synthase subunit b OS=Lactobac...1049.9     33.1     24     52GO:0016021; C:integral to membrane; IEA:UniProtKB-KW.::GO:0005886; C:plasma membrane; IEA:UniProtKB-SubCell.::GO:0045263; C:proton-transporting ATP synthase complex, coupling factor F(o); IEA:UniProtKB-KW.
GO:0015078; F:hydrogen ion transmembrane transporter activity; IEA:InterPro.
GO:0015986; P:ATP synthesis coupled proton transport; IEA:InterPro.
41A5VIQ7    172   ATPF_LACRD ATP synthase subunit b OS=Lactobac...1049.9     33.1     24     52GO:0016021; C:integral to membrane; IEA:UniProtKB-KW.::GO:0005886; C:plasma membrane; IEA:UniProtKB-SubCell.::GO:0045263; C:proton-transporting ATP synthase complex, coupling factor F(o); IEA:UniProtKB-KW.
GO:0015078; F:hydrogen ion transmembrane transporter activity; IEA:InterPro.
GO:0015986; P:ATP synthesis coupled proton transport; IEA:InterPro.
records
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