Fungal Genome Collection
University of Nebraska Lincoln
School of Biological Sciences and Center for Plant Science Innovation
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UniProt_SwissProt BLAST: Single locus
Species:
Saccharomyces cerevisiae S288C
Locus:
YGL122C
Length:
525
Number of sequences:
5887
Description:
YGL122C NAB2 SGDID:S000003090, Chr VII from 280523-278946, Genome Release 64-1-1, reverse complement, Verified ORF, "Nuclear polyadenylated RNA-binding protein required for nuclear mRNA export and poly(A) tail length control; binds nuclear pore protein Mlp1p; autoregulates mRNA levels; related to human hnRNPs; nuclear localization sequence binds Kap104p"
rec.SubjectHit LengthDescriptionAlign.LenE valueBit score% ident.  % pos.GO associations
1P32505    525   NAB2_YEAST Nuclear polyadenylated RNA-binding...5250     1079     100     100GO:0005737; C:cytoplasm; IDA:SGD.::GO:0005634; C:nucleus; IDA:SGD.
GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.::GO:0008143; F:poly(A) RNA binding; IDA:SGD.::GO:0005515; F:protein binding; IPI:IntAct.
GO:0006378; P:mRNA polyadenylation; IDA:SGD.::GO:0016973; P:poly(A)+ mRNA export from nucleus; IMP:SGD.::GO:0043488; P:regulation of mRNA stability; IMP:SGD.
2Q5F3Z9    730   ZC3HE_CHICK Zinc finger CCCH domain-containin...710.052     40     35     45GO:0016607; C:nuclear speck; IEA:UniProtKB-SubCell.
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.::GO:0008270; F:zinc ion binding; IEA:InterPro.
3Q3ZC82    735   ZC3HE_BOVIN Zinc finger CCCH domain-containin...2060.005     43.1     23     32GO:0016607; C:nuclear speck; IEA:UniProtKB-SubCell.
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.::GO:0008270; F:zinc ion binding; IEA:InterPro.
4Q8BJ05    735   ZC3HE_MOUSE Zinc finger CCCH domain-containin...840.002     44.3     31     40GO:0016607; C:nuclear speck; IEA:UniProtKB-SubCell.
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.::GO:0008270; F:zinc ion binding; IEA:InterPro.
5Q7TMD5    736   ZC3HE_RAT Zinc finger CCCH domain-containing ...850.063     39.7     28     38GO:0016607; C:nuclear speck; IEA:UniProtKB-SubCell.
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.::GO:0008270; F:zinc ion binding; IEA:InterPro.
6Q95XU6    740   ZC3HE_CAEEL Zinc finger CCCH domain-containin...1080.11     38.9     32     43GO:0005737; C:cytoplasm; IDA:UniProtKB.::GO:0005634; C:nucleus; IDA:WormBase.
GO:0003676; F:nucleic acid binding; IEA:InterPro.::GO:0005515; F:protein binding; IPI:UniProtKB.::GO:0008270; F:zinc ion binding; IEA:InterPro.
7Q5TYQ8    669   ZC3HE_DANRE Zinc finger CCCH domain-containin...770.03     40.8     35     44GO:0016607; C:nuclear speck; IEA:UniProtKB-SubCell.
GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006397; P:mRNA processing; IEA:InterPro.
8Q4R6F6    736   ZC3HE_MACFA Zinc finger CCCH domain-containin...850.006     43.1     28     36GO:0016607; C:nuclear speck; IEA:UniProtKB-SubCell.
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.::GO:0008270; F:zinc ion binding; IEA:InterPro.
9Q6PJT7    736   ZC3HE_HUMAN Zinc finger CCCH domain-containin...850.006     43.1     28     36GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0016607; C:nuclear speck; IEA:UniProtKB-SubCell.
GO:0005515; F:protein binding; IPI:UniProtKB.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.::GO:0008270; F:zinc ion binding; IEA:InterPro.
10O13713    307   NAB2_SCHPO Nuclear polyadenylated RNA-binding...1351.3     35     24     35GO:0005737; C:cytoplasm; ISS:PomBase.::GO:0005635; C:nuclear envelope; IDA:PomBase.
GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.::GO:0008143; F:poly(A) RNA binding; ISS:PomBase.
GO:0006378; P:mRNA polyadenylation; ISS:PomBase.::GO:0016973; P:poly(A)+ mRNA export from nucleus; ISS:PomBase.
11Q08AZ1    711   ZC3HE_XENLA Zinc finger CCCH domain-containin...1240.05     40     27     42GO:0016607; C:nuclear speck; IEA:UniProtKB-SubCell.
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.::GO:0008270; F:zinc ion binding; IEA:InterPro.
12Q9ZA21    1077   HGPA_HAEIF Hemoglobin and hemoglobin-haptoglo...420.004     43.9     48     52GO:0009279; C:cell outer membrane; IEA:UniProtKB-SubCell.::GO:0016021; C:integral to membrane; IEA:UniProtKB-KW.::GO:0005886; C:plasma membrane; IEA:UniProtKB-KW.
GO:0004872; F:receptor activity; IEA:UniProtKB-KW.::GO:0005215; F:transporter activity; IEA:InterPro.
13Q8ILR9    4662   YPF17_PLAF7 Protein PF14_0175 OS=Plasmodium f...1022.1     35     25     48GO:0016021; C:integral to membrane; IEA:UniProtKB-KW.
GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
14P44836    1084   HGP3_HAEIN Probable hemoglobin and hemoglobin...635.9     33.5     33     43GO:0009279; C:cell outer membrane; IEA:UniProtKB-SubCell.::GO:0016021; C:integral to membrane; IEA:UniProtKB-KW.::GO:0005886; C:plasma membrane; IEA:UniProtKB-KW.
GO:0004872; F:receptor activity; IEA:UniProtKB-KW.::GO:0005215; F:transporter activity; IEA:InterPro.
15O87296    999   HGPB_HAEIF Hemoglobin and hemoglobin-haptoglo...660.025     41.2     38     45GO:0009279; C:cell outer membrane; IEA:UniProtKB-SubCell.::GO:0016021; C:integral to membrane; IEA:UniProtKB-KW.::GO:0005886; C:plasma membrane; IEA:UniProtKB-KW.
GO:0004872; F:receptor activity; IEA:UniProtKB-KW.::GO:0005215; F:transporter activity; IEA:InterPro.
16Q8BXS7    511   GP152_MOUSE Probable G-protein coupled recept...500.042     40     48     56GO:0016021; C:integral to membrane; IEA:UniProtKB-KW.::GO:0005886; C:plasma membrane; IEA:UniProtKB-SubCell.
GO:0004930; F:G-protein coupled receptor activity; IEA:UniProtKB-KW.
17Q8TDT2    470   GP152_HUMAN Probable G-protein coupled recept...760.16     38.1     36     45GO:0016021; C:integral to membrane; IEA:UniProtKB-KW.::GO:0005886; C:plasma membrane; IEA:UniProtKB-SubCell.
GO:0004930; F:G-protein coupled receptor activity; IEA:UniProtKB-KW.
18Q9KIV2    1013   HGBA_HAEIF Hemoglobin-binding protein A OS=Ha...530.11     38.9     40     47GO:0009279; C:cell outer membrane; IEA:UniProtKB-SubCell.::GO:0016021; C:integral to membrane; IEA:UniProtKB-KW.::GO:0005886; C:plasma membrane; IEA:UniProtKB-KW.
GO:0004872; F:receptor activity; IEA:UniProtKB-KW.::GO:0005215; F:transporter activity; IEA:InterPro.
19Q6FPQ3    1052   MPH1_CANGA ATP-dependent DNA helicase MPH1 OS...370.29     37.7     43     76GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0005524; F:ATP binding; IEA:UniProtKB-KW.::GO:0008026; F:ATP-dependent helicase activity; IEA:InterPro.::GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
GO:0006281; P:DNA repair; IEA:UniProtKB-KW.
20Q54DH8    2310   TAF1_DICDI Transcription initiation factor TF...740.32     37.7     31     61GO:0005669; C:transcription factor TFIID complex; ISS:dictyBase.
GO:0005524; F:ATP binding; ISS:dictyBase.::GO:0004402; F:histone acetyltransferase activity; ISS:dictyBase.
GO:0045944; P:positive regulation of transcription from RNA polymerase II promoter; ISS:dictyBase.::GO:0006461; P:protein complex assembly; ISS:dictyBase.::GO:0006468; P:protein phosphorylation; ISS:dictyBase.::GO:0000114; P:regulation of transcription involved in G1 phase of mitotic cell cycle; ISS:dictyBase.
21C0H5F4    3179   RBP2B_PLAF7 Reticulocyte binding protein 2 ho...600.7     36.6     27     67GO:0016021; C:integral to membrane; IEA:UniProtKB-KW.::GO:0005886; C:plasma membrane; IEA:UniProtKB-SubCell.
GO:0004872; F:receptor activity; IEA:UniProtKB-KW.
GO:0016337; P:cell-cell adhesion; ISS:UniProtKB.::GO:0030260; P:entry into host cell; TAS:GeneDB_Pfalciparum.
22Q8IDX6    3130   RBP2A_PLAF7 Reticulocyte-binding protein 2 ho...606.2     33.5     25     65GO:0016021; C:integral to membrane; IEA:UniProtKB-KW.::GO:0005886; C:plasma membrane; IEA:UniProtKB-SubCell.
GO:0004872; F:receptor activity; IEA:UniProtKB-KW.
GO:0016337; P:cell-cell adhesion; ISS:UniProtKB.
23O95639    269   CPSF4_HUMAN Cleavage and polyadenylation spec...470.85     35.4     40     51GO:0005847; C:mRNA cleavage and polyadenylation specificity factor complex; IDA:UniProtKB.
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.::GO:0008270; F:zinc ion binding; IEA:InterPro.
GO:0046778; P:modification by virus of host mRNA processing; TAS:Reactome.::GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0019058; P:viral infectious cycle; TAS:Reactome.
24Q6DJP7    269   CPSF4_XENLA Cleavage and polyadenylation spec...470.95     35.4     40     51GO:0005847; C:mRNA cleavage and polyadenylation specificity factor complex; ISS:UniProtKB.
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.::GO:0008270; F:zinc ion binding; IEA:InterPro.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.
25Q6AT25    493   C3H34_ORYSJ Zinc finger CCCH domain-containin...621     35.8     35     45
GO:0003677; F:DNA binding; IEA:UniProtKB-KW.::GO:0008270; F:zinc ion binding; IEA:InterPro.
26Q66KE3    269   CPSF4_XENTR Cleavage and polyadenylation spec...471     35.4     40     51GO:0005847; C:mRNA cleavage and polyadenylation specificity factor complex; ISS:UniProtKB.
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.::GO:0008270; F:zinc ion binding; IEA:InterPro.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.
27P44809    999   HGP2_HAEIN Probable hemoglobin and hemoglobin...491     35.8     39     47GO:0009279; C:cell outer membrane; IEA:UniProtKB-SubCell.::GO:0016021; C:integral to membrane; IEA:UniProtKB-KW.::GO:0005886; C:plasma membrane; IEA:UniProtKB-KW.
GO:0004872; F:receptor activity; IEA:UniProtKB-KW.::GO:0005215; F:transporter activity; IEA:InterPro.
28Q5FVR7    243   CPSF4_RAT Cleavage and polyadenylation specif...471.1     35     40     51GO:0005847; C:mRNA cleavage and polyadenylation specificity factor complex; ISS:UniProtKB.
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.::GO:0008270; F:zinc ion binding; IEA:InterPro.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.
29O19137    243   CPSF4_BOVIN Cleavage and polyadenylation spec...471.2     35     40     51GO:0005847; C:mRNA cleavage and polyadenylation specificity factor complex; ISS:UniProtKB.
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.::GO:0008270; F:zinc ion binding; IEA:InterPro.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.
30P91573    593   WRT6_CAEEL Warthog protein 6 OS=Caenorhabditi...377     33.1     46     46GO:0009986; C:cell surface; IEA:UniProtKB-SubCell.::GO:0005615; C:extracellular space; IEA:UniProtKB-SubCell.::GO:0005886; C:plasma membrane; IEA:UniProtKB-SubCell.
GO:0008233; F:peptidase activity; IEA:UniProtKB-KW.
GO:0007154; P:cell communication; IEA:InterPro.::GO:0016539; P:intein-mediated protein splicing; IEA:InterPro.::GO:0040011; P:locomotion; IMP:WormBase.::GO:0018996; P:molting cycle, collagen and cuticulin-based cuticle; IMP:WormBase.::GO:0007275; P:multicellular organismal development; IEA:UniProtKB-KW.::GO:0040018; P:positive regulation of multicellular organism growth; IMP:WormBase.::GO:0006508; P:proteolysis; IEA:UniProtKB-KW.
31P0CO12    1064   RNA14_CRYNJ mRNA 3'-end-processing protein RN...381.9     35     42     63GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0005488; F:binding; IEA:InterPro.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.
records
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