Fungal Genome Collection
University of Nebraska Lincoln
School of Biological Sciences and Center for Plant Science Innovation
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UniProt_SwissProt BLAST: Single locus
Species:
Saccharomyces cerevisiae S288C
Locus:
YGL120C
Length:
767
Number of sequences:
5887
Description:
YGL120C PRP43 SGDID:S000003088, Chr VII from 283937-281634, Genome Release 64-1-1, reverse complement, Verified ORF, "RNA helicase in the DEAH-box family, functions in both RNA polymerase I and polymerase II transcript metabolism, involved in release of the lariat-intron from the spliceosome"
rec.SubjectHit LengthDescriptionAlign.LenE valueBit score% ident.  % pos.GO associations
151Q6XW15    3085   POLG_BTMV Genome polyprotein OS=Beet mosaic v...4190.46     37.7     20     37GO:0019028; C:viral capsid; IEA:UniProtKB-KW.
GO:0005524; F:ATP binding; IEA:UniProtKB-KW.::GO:0008026; F:ATP-dependent helicase activity; IEA:InterPro.::GO:0004197; F:cysteine-type endopeptidase activity; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:InterPro.::GO:0003968; F:RNA-directed RNA polymerase activity; IEA:UniProtKB-KW.::GO:0005198; F:structural molecule activity; IEA:InterPro.
GO:0006508; P:proteolysis; IEA:UniProtKB-KW.::GO:0018144; P:RNA-protein covalent cross-linking; IEA:UniProtKB-KW.::GO:0006351; P:transcription, DNA-dependent; IEA:InterPro.::GO:0019079; P:viral genome replication; IEA:InterPro.
152O11436    3086   POLG_RGMVD Genome polyprotein OS=Ryegrass mos...3270.47     37.7     21     37GO:0019028; C:viral capsid; IEA:UniProtKB-KW.
GO:0005524; F:ATP binding; IEA:UniProtKB-KW.::GO:0008026; F:ATP-dependent helicase activity; IEA:InterPro.::GO:0004197; F:cysteine-type endopeptidase activity; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:InterPro.::GO:0003968; F:RNA-directed RNA polymerase activity; IEA:UniProtKB-KW.::GO:0005198; F:structural molecule activity; IEA:InterPro.
GO:0006508; P:proteolysis; IEA:UniProtKB-KW.::GO:0018144; P:RNA-protein covalent cross-linking; IEA:UniProtKB-KW.::GO:0006351; P:transcription, DNA-dependent; IEA:InterPro.::GO:0019079; P:viral genome replication; IEA:InterPro.
153Q8W4R3    591   RH30_ARATH DEAD-box ATP-dependent RNA helicas...3850.48     37.4     22     39GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0005524; F:ATP binding; IEA:UniProtKB-KW.::GO:0008026; F:ATP-dependent helicase activity; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0000184; P:nuclear-transcribed mRNA catabolic process, nonsense-mediated decay; IEA:UniProtKB-KW.::GO:0006364; P:rRNA processing; IEA:UniProtKB-KW.
154Q65730    3093   POLG_BSTV1 Genome polyprotein OS=rymovirus). ...670.53     37.7     31     52GO:0019028; C:viral capsid; IEA:UniProtKB-KW.
GO:0005524; F:ATP binding; IEA:UniProtKB-KW.::GO:0008026; F:ATP-dependent helicase activity; IEA:InterPro.::GO:0004197; F:cysteine-type endopeptidase activity; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:InterPro.::GO:0003968; F:RNA-directed RNA polymerase activity; IEA:UniProtKB-KW.::GO:0005198; F:structural molecule activity; IEA:InterPro.
GO:0006508; P:proteolysis; IEA:UniProtKB-KW.::GO:0018144; P:RNA-protein covalent cross-linking; IEA:UniProtKB-KW.::GO:0006351; P:transcription, DNA-dependent; IEA:InterPro.::GO:0019079; P:viral genome replication; IEA:InterPro.
155Q01901    3344   POLG_PRSVH Genome polyprotein OS=Papaya rings...3410.64     37.4     21     38GO:0019028; C:viral capsid; IEA:UniProtKB-KW.
GO:0005524; F:ATP binding; IEA:UniProtKB-KW.::GO:0008026; F:ATP-dependent helicase activity; IEA:InterPro.::GO:0004197; F:cysteine-type endopeptidase activity; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:InterPro.::GO:0003968; F:RNA-directed RNA polymerase activity; IEA:UniProtKB-KW.::GO:0005198; F:structural molecule activity; IEA:InterPro.
GO:0006508; P:proteolysis; IEA:UniProtKB-KW.::GO:0018144; P:RNA-protein covalent cross-linking; IEA:UniProtKB-KW.::GO:0006351; P:transcription, DNA-dependent; IEA:InterPro.::GO:0019079; P:viral genome replication; IEA:InterPro.
156Q5N7W4    666   RH30_ORYSJ DEAD-box ATP-dependent RNA helicas...2431.9     35.4     23     38GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0005524; F:ATP binding; IEA:UniProtKB-KW.::GO:0008026; F:ATP-dependent helicase activity; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0000184; P:nuclear-transcribed mRNA catabolic process, nonsense-mediated decay; IEA:UniProtKB-KW.::GO:0006364; P:rRNA processing; IEA:UniProtKB-KW.
157P33515    3341   POLG_MCFA Genome polyprotein OS=Mosquito cell...892.2     35.8     30     52GO:0033644; C:host cell membrane; IEA:UniProtKB-SubCell.::GO:0016021; C:integral to membrane; IEA:UniProtKB-KW.::GO:0019028; C:viral capsid; IEA:UniProtKB-KW.::GO:0019031; C:viral envelope; IEA:InterPro.
GO:0005524; F:ATP binding; IEA:UniProtKB-KW.::GO:0008026; F:ATP-dependent helicase activity; IEA:InterPro.::GO:0004482; F:mRNA (guanine-N7-)-methyltransferase activity; IEA:EC.::GO:0004483; F:mRNA (nucleoside-2'-O-)-methyltransferase activity; IEA:EC.::GO:0046983; F:protein dimerization activity; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:InterPro.::GO:0003724; F:RNA helicase activity; IEA:InterPro.::GO:0003968; F:RNA-directed RNA polymerase activity; IEA:UniProtKB-KW.::GO:0004252; F:serine-type endopeptidase activity; IEA:InterPro.::GO:0070008; F:serine-type exopeptidase activity; IEA:InterPro.
GO:0030683; P:evasion by virus of host immune response; IEA:UniProtKB-KW.::GO:0032774; P:RNA biosynthetic process; IEA:UniProtKB-KW.::GO:0019079; P:viral genome replication; IEA:InterPro.
158Q21MG1    917   SECA_SACD2 Protein translocase subunit SecA O...1862.8     35     28     45GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0005886; C:plasma membrane; IEA:UniProtKB-SubCell.
GO:0005524; F:ATP binding; IEA:UniProtKB-KW.::GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
GO:0017038; P:protein import; IEA:InterPro.::GO:0006605; P:protein targeting; IEA:InterPro.
159Q0W2G1    444   SRP54_UNCMA Signal recognition particle 54 kD...1563.1     34.7     24     44GO:0005786; C:signal recognition particle, endoplasmic reticulum targeting; IEA:UniProtKB-KW.
GO:0008312; F:7S RNA binding; IEA:InterPro.::GO:0005525; F:GTP binding; IEA:UniProtKB-KW.::GO:0017111; F:nucleoside-triphosphatase activity; IEA:InterPro.
GO:0006614; P:SRP-dependent cotranslational protein targeting to membrane; IEA:InterPro.
160P06935    3430   POLG_WNV Genome polyprotein OS=West Nile viru...1213.7     35     27     41GO:0044167; C:host cell endoplasmic reticulum membrane; IEA:UniProtKB-SubCell.::GO:0042025; C:host cell nucleus; IEA:UniProtKB-SubCell.::GO:0016021; C:integral to membrane; IEA:UniProtKB-KW.::GO:0019028; C:viral capsid; IEA:UniProtKB-KW.::GO:0019031; C:viral envelope; IEA:InterPro.::GO:0055036; C:virion membrane; IEA:UniProtKB-SubCell.
GO:0005524; F:ATP binding; IEA:UniProtKB-KW.::GO:0008026; F:ATP-dependent helicase activity; IEA:InterPro.::GO:0003725; F:double-stranded RNA binding; IEA:InterPro.::GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.::GO:0004482; F:mRNA (guanine-N7-)-methyltransferase activity; IEA:EC.::GO:0004483; F:mRNA (nucleoside-2'-O-)-methyltransferase activity; IEA:EC.::GO:0005515; F:protein binding; IPI:IntAct.::GO:0046983; F:protein dimerization activity; IEA:InterPro.::GO:0003724; F:RNA helicase activity; IEA:InterPro.::GO:0003968; F:RNA-directed RNA polymerase activity; IEA:UniProtKB-KW.::GO:0004252; F:serine-type endopeptidase activity; IEA:InterPro.::GO:0070008; F:serine-type exopeptidase activity; IEA:InterPro.::GO:0005198; F:structural molecule activity; IEA:InterPro.
GO:0030683; P:evasion by virus of host immune response; IEA:UniProtKB-KW.::GO:0006508; P:proteolysis; IEA:UniProtKB-KW.::GO:0006355; P:regulation of transcription, DNA-dependent; IEA:UniProtKB-KW.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW.::GO:0019079; P:viral genome replication; IEA:InterPro.
161A5UMY7    445   SRP54_METS3 Signal recognition particle 54 kD...575.2     33.9     37     53GO:0005786; C:signal recognition particle, endoplasmic reticulum targeting; IEA:UniProtKB-KW.
GO:0008312; F:7S RNA binding; IEA:InterPro.::GO:0005525; F:GTP binding; IEA:UniProtKB-KW.::GO:0017111; F:nucleoside-triphosphatase activity; IEA:InterPro.
GO:0006614; P:SRP-dependent cotranslational protein targeting to membrane; IEA:InterPro.
162P19109    719   DDX17_DROME ATP-dependent RNA helicase p62 OS...2005.5     34.3     25     46GO:0071013; C:catalytic step 2 spliceosome; IDA:FlyBase.::GO:0005875; C:microtubule associated complex; IDA:FlyBase.::GO:0005703; C:polytene chromosome puff; IDA:FlyBase.::GO:0071011; C:precatalytic spliceosome; IDA:FlyBase.
GO:0005524; F:ATP binding; IEA:UniProtKB-KW.::GO:0008026; F:ATP-dependent helicase activity; IEA:InterPro.::GO:0005515; F:protein binding; IPI:IntAct.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0019730; P:antimicrobial humoral response; IMP:FlyBase.::GO:0000398; P:nuclear mRNA splicing, via spliceosome; IC:FlyBase.::GO:0000381; P:regulation of alternative nuclear mRNA splicing, via spliceosome; IMP:FlyBase.::GO:0006417; P:regulation of translation; IEA:UniProtKB-KW.::GO:0016246; P:RNA interference; IMP:FlyBase.
163Q6CM10    2082   SEC16_KLULA COPII coat assembly protein SEC16...606.6     33.9     33     48GO:0005789; C:endoplasmic reticulum membrane; IEA:UniProtKB-SubCell.
GO:0006914; P:autophagy; IEA:UniProtKB-KW.::GO:0048208; P:COPII vesicle coating; IEA:InterPro.::GO:0015031; P:protein transport; IEA:UniProtKB-KW.
164P47426    304   ECFA2_MYCGE Energy-coupling factor transporte...306.8     33.5     43     67GO:0005886; C:plasma membrane; IEA:UniProtKB-SubCell.
GO:0005524; F:ATP binding; IEA:UniProtKB-KW.::GO:0016887; F:ATPase activity; IEA:InterPro.
GO:0006810; P:transport; IEA:UniProtKB-KW.
165Q8CNV8    329   CCPA_STAES Catabolite control protein A OS=St...1927.5     33.5     24     42GO:0005622; C:intracellular; IEA:InterPro.
GO:0003677; F:DNA binding; IEA:UniProtKB-KW.::GO:0003700; F:sequence-specific DNA binding transcription factor activity; IEA:InterPro.
GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW.
166Q5HNH3    329   CCPA_STAEQ Catabolite control protein A OS=St...1927.5     33.5     24     42GO:0005622; C:intracellular; IEA:InterPro.
GO:0003677; F:DNA binding; IEA:UniProtKB-KW.::GO:0003700; F:sequence-specific DNA binding transcription factor activity; IEA:InterPro.
GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW.
167Q9HJX7    674   HELS_THEAC Putative ski2-type helicase OS=NBR...1368.2     33.5     26     46
GO:0005524; F:ATP binding; IEA:UniProtKB-KW.::GO:0008026; F:ATP-dependent helicase activity; IEA:InterPro.::GO:0003677; F:DNA binding; IEA:InterPro.
GO:0006281; P:DNA repair; IEA:InterPro.
168D4GYW6    456   FTSY_HALVD Signal recognition particle recept...1578.3     33.5     27     43GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0005886; C:plasma membrane; IEA:UniProtKB-SubCell.
GO:0005525; F:GTP binding; IEA:UniProtKB-KW.::GO:0017111; F:nucleoside-triphosphatase activity; IEA:InterPro.::GO:0004872; F:receptor activity; IEA:UniProtKB-KW.
GO:0006614; P:SRP-dependent cotranslational protein targeting to membrane; IEA:InterPro.
169Q2NE47    444   SRP54_METST Signal recognition particle 54 kD...1748.9     33.1     26     44GO:0005786; C:signal recognition particle, endoplasmic reticulum targeting; IEA:UniProtKB-KW.
GO:0008312; F:7S RNA binding; IEA:InterPro.::GO:0005525; F:GTP binding; IEA:UniProtKB-KW.::GO:0017111; F:nucleoside-triphosphatase activity; IEA:InterPro.
GO:0006614; P:SRP-dependent cotranslational protein targeting to membrane; IEA:InterPro.
170O80763    578   NRX1_ARATH Probable nucleoredoxin 1 OS=Arabid...429.7     33.1     33     60GO:0005829; C:cytosol; IDA:TAIR.
GO:0047134; F:protein-disulfide reductase activity; IEA:EC.
GO:0045454; P:cell redox homeostasis; IEA:InterPro.::GO:0009860; P:pollen tube growth; IMP:TAIR.::GO:0010183; P:pollen tube guidance; IMP:TAIR.::GO:0080092; P:regulation of pollen tube growth; IMP:UniProtKB.::GO:0046686; P:response to cadmium ion; IEP:TAIR.
records
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