Fungal Genome Collection
University of Nebraska Lincoln
School of Biological Sciences and Center for Plant Science Innovation
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UniProt_SwissProt BLAST: Single locus
Species:
Saccharomyces cerevisiae S288C
Locus:
YGL078C
Length:
523
Number of sequences:
5887
Description:
YGL078C DBP3 SGDID:S000003046, Chr VII from 361859-360288, Genome Release 64-1-1, reverse complement, Verified ORF, "Putative ATP-dependent RNA helicase of the DEAD-box family involved in ribosomal biogenesis"
rec.SubjectHit LengthDescriptionAlign.LenE valueBit score% ident.  % pos.GO associations
181Q5R6D8    1032   DDX46_PONAB Probable ATP-dependent RNA helica...4371e-74     259     36     57GO:0015030; C:Cajal body; IEA:UniProtKB-SubCell.::GO:0016607; C:nuclear speck; IEA:UniProtKB-SubCell.
GO:0005524; F:ATP binding; IEA:UniProtKB-KW.::GO:0008026; F:ATP-dependent helicase activity; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.
182P33906    643   DEAD_KLEPN Cold-shock DEAD box protein A OS=K...3779e-74     252     39     59GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0005524; F:ATP binding; IEA:UniProtKB-KW.::GO:0008026; F:ATP-dependent helicase activity; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006355; P:regulation of transcription, DNA-dependent; IEA:UniProtKB-KW.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW.
183P57453    601   DEAD_BUCAI Cold-shock DEAD box protein A homo...3775e-73     249     40     59GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0005524; F:ATP binding; IEA:UniProtKB-KW.::GO:0008026; F:ATP-dependent helicase activity; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006355; P:regulation of transcription, DNA-dependent; IEA:UniProtKB-KW.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW.
184P0A9P8    629   DEAD_SHIFL Cold-shock DEAD box protein A OS=S...3587e-73     249     40     59GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0005524; F:ATP binding; IEA:UniProtKB-KW.::GO:0008026; F:ATP-dependent helicase activity; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006355; P:regulation of transcription, DNA-dependent; IEA:UniProtKB-KW.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW.
185P0A9P6    629   DEAD_ECOLI Cold-shock DEAD box protein A OS=E...3587e-73     249     40     59GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0030684; C:preribosome; IDA:EcoCyc.
GO:0005524; F:ATP binding; IEA:UniProtKB-KW.::GO:0004004; F:ATP-dependent RNA helicase activity; IDA:EcoCyc.::GO:0005515; F:protein binding; IPI:EcoCyc.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0070417; P:cellular response to cold; IMP:EcoCyc.::GO:0000027; P:ribosomal large subunit assembly; IMP:EcoCyc.::GO:0006401; P:RNA catabolic process; IGI:EcoCyc.
186P0A9P7    629   DEAD_ECOL6 Cold-shock DEAD box protein A OS=E...3587e-73     249     40     59GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0005524; F:ATP binding; IEA:UniProtKB-KW.::GO:0008026; F:ATP-dependent helicase activity; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006355; P:regulation of transcription, DNA-dependent; IEA:UniProtKB-KW.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW.
187Q6BML1    913   PRP5_DEBHA Pre-mRNA-processing ATP-dependent ...4259e-73     254     37     56GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0005524; F:ATP binding; IEA:UniProtKB-KW.::GO:0008026; F:ATP-dependent helicase activity; IEA:InterPro.::GO:0003676; F:nucleic acid binding; IEA:InterPro.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.
188Q8XA87    629   DEAD_ECO57 Cold-shock DEAD box protein A OS=E...3589e-73     249     40     59GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0005524; F:ATP binding; IEA:UniProtKB-KW.::GO:0008026; F:ATP-dependent helicase activity; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006355; P:regulation of transcription, DNA-dependent; IEA:UniProtKB-KW.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW.
189P0CQ74    637   DED1_CRYNJ ATP-dependent RNA helicase ded1 OS...3861e-72     249     40     57GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0005524; F:ATP binding; IEA:UniProtKB-KW.::GO:0008026; F:ATP-dependent helicase activity; IEA:InterPro.::GO:0003743; F:translation initiation factor activity; IEA:UniProtKB-KW.
190P0CQ75    637   DED1_CRYNB ATP-dependent RNA helicase ded1 OS...3861e-72     249     40     57GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0005524; F:ATP binding; IEA:UniProtKB-KW.::GO:0008026; F:ATP-dependent helicase activity; IEA:InterPro.::GO:0003743; F:translation initiation factor activity; IEA:UniProtKB-KW.
191Q5ACU6    539   RRP3_CANAL ATP-dependent rRNA helicase RRP3 O...3421e-72     246     39     60GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0005524; F:ATP binding; IEA:UniProtKB-KW.::GO:0008026; F:ATP-dependent helicase activity; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006364; P:rRNA processing; IEA:UniProtKB-KW.
192P0A4D8    524   EXP9_STRR6 Probable ATP-dependent RNA helicas...3571e-72     246     40     57GO:0005886; C:plasma membrane; IEA:UniProtKB-SubCell.
GO:0005524; F:ATP binding; IEA:UniProtKB-KW.::GO:0008026; F:ATP-dependent helicase activity; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
193P0A4D7    524   EXP9_STRPN Probable ATP-dependent RNA helicas...3571e-72     246     40     57GO:0005886; C:plasma membrane; IEA:UniProtKB-SubCell.
GO:0005524; F:ATP binding; IEA:UniProtKB-KW.::GO:0008026; F:ATP-dependent helicase activity; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
194A1A4H6    765   DDX27_BOVIN Probable ATP-dependent RNA helica...4052e-72     251     38     57GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0005524; F:ATP binding; IEA:UniProtKB-KW.::GO:0008026; F:ATP-dependent helicase activity; IEA:InterPro.::GO:0003676; F:nucleic acid binding; IEA:InterPro.
195Q6BQ61    477   RRP3_DEBHA ATP-dependent rRNA helicase RRP3 O...3572e-72     244     38     59GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0005524; F:ATP binding; IEA:UniProtKB-KW.::GO:0008026; F:ATP-dependent helicase activity; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006364; P:rRNA processing; IEA:UniProtKB-KW.
196Q3MSQ8    724   DDX4_RANLE Probable ATP-dependent RNA helicas...4192e-72     250     37     59GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.::GO:0071546; C:pi-body; ISS:UniProtKB.::GO:0071547; C:piP-body; ISS:UniProtKB.
GO:0005524; F:ATP binding; IEA:UniProtKB-KW.::GO:0008026; F:ATP-dependent helicase activity; IEA:InterPro.::GO:0003676; F:nucleic acid binding; IEA:InterPro.
GO:0030154; P:cell differentiation; IEA:UniProtKB-KW.::GO:0007275; P:multicellular organismal development; IEA:UniProtKB-KW.::GO:0048477; P:oogenesis; IEA:UniProtKB-KW.::GO:0007283; P:spermatogenesis; IEA:UniProtKB-KW.
197A5DQF1    475   RRP3_PICGU ATP-dependent rRNA helicase RRP3 O...3372e-72     244     39     60GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0005524; F:ATP binding; IEA:UniProtKB-KW.::GO:0008026; F:ATP-dependent helicase activity; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006364; P:rRNA processing; IEA:UniProtKB-KW.
198Q9BUQ8    820   DDX23_HUMAN Probable ATP-dependent RNA helica...3913e-72     251     37     58GO:0071013; C:catalytic step 2 spliceosome; IDA:UniProtKB.::GO:0005739; C:mitochondrion; IDA:HPA.::GO:0005654; C:nucleoplasm; TAS:Reactome.::GO:0005886; C:plasma membrane; IDA:HPA.::GO:0005682; C:U5 snRNP; IDA:HGNC.
GO:0005524; F:ATP binding; IEA:UniProtKB-KW.::GO:0004004; F:ATP-dependent RNA helicase activity; TAS:ProtInc.::GO:0003676; F:nucleic acid binding; IEA:InterPro.::GO:0005515; F:protein binding; IPI:UniProtKB.
GO:0000354; P:cis assembly of pre-catalytic spliceosome; IC:HGNC.
199Q89AF9    602   DEAD_BUCBP Cold-shock DEAD box protein A homo...3703e-72     247     39     58GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0005524; F:ATP binding; IEA:UniProtKB-KW.::GO:0008026; F:ATP-dependent helicase activity; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006355; P:regulation of transcription, DNA-dependent; IEA:UniProtKB-KW.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW.
200A3LS22    484   RRP3_PICST ATP-dependent rRNA helicase RRP3 O...3377e-72     243     39     61GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0005524; F:ATP binding; IEA:UniProtKB-KW.::GO:0008026; F:ATP-dependent helicase activity; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006364; P:rRNA processing; IEA:UniProtKB-KW.
201Q65N62    487   CSHA_BACLD DEAD-box ATP-dependent RNA helicas...3607e-72     243     41     56GO:0043590; C:bacterial nucleoid; ISS:UniProtKB.::GO:0005737; C:cytoplasm; IEA:UniProtKB-KW.
GO:0005524; F:ATP binding; ISS:UniProtKB.::GO:0004004; F:ATP-dependent RNA helicase activity; ISS:UniProtKB.::GO:0003723; F:RNA binding; ISS:UniProtKB.
202A3LQ55    875   PRP5_PICST Pre-mRNA-processing ATP-dependent ...4021e-71     250     38     59GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0005524; F:ATP binding; IEA:UniProtKB-KW.::GO:0008026; F:ATP-dependent helicase activity; IEA:InterPro.::GO:0003676; F:nucleic acid binding; IEA:InterPro.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.
203Q0UN57    1184   PRP5_PHANO Pre-mRNA-processing ATP-dependent ...4311e-71     252     37     55GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0005524; F:ATP binding; IEA:UniProtKB-KW.::GO:0008026; F:ATP-dependent helicase activity; IEA:InterPro.::GO:0003676; F:nucleic acid binding; IEA:InterPro.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.
204P93008    733   RH21_ARATH DEAD-box ATP-dependent RNA helicas...4941e-71     248     33     53GO:0005737; C:cytoplasm; IDA:TAIR.::GO:0005634; C:nucleus; IDA:TAIR.
GO:0005524; F:ATP binding; IEA:UniProtKB-KW.::GO:0008026; F:ATP-dependent helicase activity; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.
205Q96GQ7    796   DDX27_HUMAN Probable ATP-dependent RNA helica...4051e-71     249     38     57GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0005524; F:ATP binding; IEA:UniProtKB-KW.::GO:0008026; F:ATP-dependent helicase activity; IEA:InterPro.::GO:0003676; F:nucleic acid binding; IEA:InterPro.
206P96614    494   CSHA_BACSU DEAD-box ATP-dependent RNA helicas...3602e-71     242     40     56GO:0043590; C:bacterial nucleoid; IDA:UniProtKB.::GO:0005737; C:cytoplasm; IEA:UniProtKB-KW.
GO:0005524; F:ATP binding; IDA:UniProtKB.::GO:0004004; F:ATP-dependent RNA helicase activity; IDA:UniProtKB.::GO:0003723; F:RNA binding; IDA:UniProtKB.
GO:0009409; P:response to cold; IGI:UniProtKB.::GO:0010501; P:RNA secondary structure unwinding; IDA:UniProtKB.
207Q5L3G9    467   CSHA_GEOKA DEAD-box ATP-dependent RNA helicas...3582e-71     241     41     55GO:0043590; C:bacterial nucleoid; ISS:UniProtKB.::GO:0005737; C:cytoplasm; IEA:UniProtKB-KW.
GO:0005524; F:ATP binding; ISS:UniProtKB.::GO:0004004; F:ATP-dependent RNA helicase activity; ISS:UniProtKB.::GO:0003723; F:RNA binding; ISS:UniProtKB.
208Q53RK8    736   RH21_ORYSJ DEAD-box ATP-dependent RNA helicas...4062e-71     247     36     55GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0005524; F:ATP binding; IEA:UniProtKB-KW.::GO:0008026; F:ATP-dependent helicase activity; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.
209Q921N6    760   DDX27_MOUSE Probable ATP-dependent RNA helica...4053e-71     248     38     57GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0005524; F:ATP binding; IEA:UniProtKB-KW.::GO:0008026; F:ATP-dependent helicase activity; IEA:InterPro.::GO:0003676; F:nucleic acid binding; IEA:InterPro.
210Q9LUW5    616   RH53_ARATH DEAD-box ATP-dependent RNA helicas...3373e-71     244     40     61GO:0005618; C:cell wall; IDA:TAIR.::GO:0005739; C:mitochondrion; IDA:TAIR.::GO:0005730; C:nucleolus; IDA:TAIR.::GO:0043234; C:protein complex; IDA:TAIR.
GO:0005524; F:ATP binding; IEA:UniProtKB-KW.::GO:0008026; F:ATP-dependent helicase activity; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0000373; P:Group II intron splicing; IMP:TAIR.::GO:0009409; P:response to cold; IEP:TAIR.
211Q5RC67    820   DDX23_PONAB Probable ATP-dependent RNA helica...3913e-71     248     37     58GO:0005681; C:spliceosomal complex; IEA:UniProtKB-KW.
GO:0005524; F:ATP binding; IEA:UniProtKB-KW.::GO:0008026; F:ATP-dependent helicase activity; IEA:InterPro.::GO:0003676; F:nucleic acid binding; IEA:InterPro.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.
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