Fungal Genome Collection
University of Nebraska Lincoln
School of Biological Sciences and Center for Plant Science Innovation
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UniProt_SwissProt BLAST: Single locus
Species:
Saccharomyces cerevisiae S288C
Locus:
YGL070C
Length:
122
Number of sequences:
5887
Description:
YGL070C RPB9 SGDID:S000003038, Chr VII from 374827-374459, Genome Release 64-1-1, reverse complement, Verified ORF, "RNA polymerase II subunit B12.6; contacts DNA; mutations affect transcription start site selection and fidelity of transcription"
rec.SubjectHit LengthDescriptionAlign.LenE valueBit score% ident.  % pos.GO associations
1P27999    122   RPB9_YEAST DNA-directed RNA polymerase II sub...1221e-86     254     100     100GO:0005665; C:DNA-directed RNA polymerase II, core complex; IDA:SGD.
GO:0003677; F:DNA binding; IEA:InterPro.::GO:0003899; F:DNA-directed RNA polymerase activity; IEA:UniProtKB-KW.::GO:0008270; F:zinc ion binding; IEA:InterPro.
GO:0006281; P:DNA repair; IEA:UniProtKB-KW.::GO:0001193; P:maintenance of transcriptional fidelity during DNA-dependent transcription elongation from RNA polymerase II promoter; IMP:SGD.::GO:0006367; P:transcription initiation from RNA polymerase II promoter; IMP:SGD.
2Q6FS48    122   RPB9_CANGA DNA-directed RNA polymerase II sub...1224e-86     253     98     100GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0003677; F:DNA binding; IEA:InterPro.::GO:0003899; F:DNA-directed RNA polymerase activity; IEA:UniProtKB-KW.::GO:0008270; F:zinc ion binding; IEA:InterPro.
3Q755B3    122   RPB9_ASHGO DNA-directed RNA polymerase II sub...1228e-80     237     91     95GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0003677; F:DNA binding; IEA:InterPro.::GO:0003899; F:DNA-directed RNA polymerase activity; IEA:UniProtKB-KW.::GO:0008270; F:zinc ion binding; IEA:InterPro.
4O74635    113   RPB9_SCHPO DNA-directed RNA polymerase II sub...1102e-36     126     52     65GO:0005829; C:cytosol; IDA:PomBase.::GO:0016591; C:DNA-directed RNA polymerase II, holoenzyme; TAS:PomBase.
GO:0003677; F:DNA binding; IEA:InterPro.::GO:0003899; F:DNA-directed RNA polymerase activity; IEA:UniProtKB-KW.::GO:0008270; F:zinc ion binding; IEA:InterPro.
GO:0006366; P:transcription from RNA polymerase II promoter; IC:PomBase.::GO:0006283; P:transcription-coupled nucleotide-excision repair; ISS:PomBase.
5P36958    129   RPB9_DROME DNA-directed RNA polymerase II sub...1117e-34     120     51     69GO:0005665; C:DNA-directed RNA polymerase II, core complex; IDA:FlyBase.
GO:0003677; F:DNA binding; IEA:InterPro.::GO:0003899; F:DNA-directed RNA polymerase activity; ISS:FlyBase.::GO:0008270; F:zinc ion binding; IEA:InterPro.
GO:0007067; P:mitosis; IMP:FlyBase.::GO:0007095; P:mitotic cell cycle G2/M transition DNA damage checkpoint; IGI:FlyBase.::GO:0006366; P:transcription from RNA polymerase II promoter; ISS:FlyBase.
6Q32P73    125   RPB9_BOVIN DNA-directed RNA polymerase II sub...1147e-30     109     44     64GO:0005665; C:DNA-directed RNA polymerase II, core complex; ISS:UniProtKB.
GO:0003677; F:DNA binding; IEA:InterPro.::GO:0003899; F:DNA-directed RNA polymerase activity; IEA:UniProtKB-KW.::GO:0008270; F:zinc ion binding; IEA:InterPro.
GO:0006468; P:protein phosphorylation; ISS:GOC.::GO:0006366; P:transcription from RNA polymerase II promoter; ISS:UniProtKB.
7P60899    125   RPB9_PIG DNA-directed RNA polymerase II subun...1111e-29     109     45     65GO:0005665; C:DNA-directed RNA polymerase II, core complex; ISS:UniProtKB.
GO:0003677; F:DNA binding; IEA:InterPro.::GO:0003899; F:DNA-directed RNA polymerase activity; IEA:UniProtKB-KW.::GO:0008270; F:zinc ion binding; IEA:InterPro.
GO:0006366; P:transcription from RNA polymerase II promoter; ISS:UniProtKB.
8P60898    125   RPB9_MOUSE DNA-directed RNA polymerase II sub...1111e-29     109     45     65GO:0005665; C:DNA-directed RNA polymerase II, core complex; ISS:UniProtKB.
GO:0003677; F:DNA binding; IEA:InterPro.::GO:0003899; F:DNA-directed RNA polymerase activity; IEA:UniProtKB-KW.::GO:0008270; F:zinc ion binding; IEA:InterPro.
GO:0006366; P:transcription from RNA polymerase II promoter; ISS:UniProtKB.
9P36954    125   RPB9_HUMAN DNA-directed RNA polymerase II sub...1111e-29     109     45     65GO:0005665; C:DNA-directed RNA polymerase II, core complex; IDA:UniProtKB.
GO:0003677; F:DNA binding; IEA:InterPro.::GO:0003899; F:DNA-directed RNA polymerase activity; TAS:ProtInc.::GO:0008270; F:zinc ion binding; TAS:ProtInc.
GO:0006370; P:mRNA capping; TAS:Reactome.::GO:0000398; P:nuclear mRNA splicing, via spliceosome; TAS:Reactome.::GO:0050434; P:positive regulation of viral transcription; TAS:Reactome.::GO:0006468; P:protein phosphorylation; IDA:GOC.::GO:0006368; P:transcription elongation from RNA polymerase II promoter; TAS:Reactome.::GO:0006367; P:transcription initiation from RNA polymerase II promoter; TAS:Reactome.::GO:0006283; P:transcription-coupled nucleotide-excision repair; TAS:Reactome.::GO:0016032; P:viral reproduction; TAS:Reactome.
10Q8SQU1    108   RPB9_ENCCU DNA-directed RNA polymerase II sub...1072e-18     79.7     33     55GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0003677; F:DNA binding; IEA:InterPro.::GO:0003899; F:DNA-directed RNA polymerase activity; IEA:UniProtKB-KW.::GO:0008270; F:zinc ion binding; IEA:InterPro.
11Q58548    108   RPOM_METJA DNA-directed RNA polymerase subuni...1090.0000000001     58.5     32     46
GO:0003677; F:DNA binding; IEA:InterPro.::GO:0003899; F:DNA-directed RNA polymerase activity; IEA:UniProtKB-KW.::GO:0003700; F:sequence-specific DNA binding transcription factor activity; IEA:InterPro.::GO:0008270; F:zinc ion binding; IEA:InterPro.
12Q56254    110   RPOM_THECE DNA-directed RNA polymerase subuni...1150.00000003     51.6     28     45
GO:0003677; F:DNA binding; IEA:InterPro.::GO:0003899; F:DNA-directed RNA polymerase activity; IEA:UniProtKB-KW.::GO:0003700; F:sequence-specific DNA binding transcription factor activity; IEA:InterPro.::GO:0008270; F:zinc ion binding; IEA:InterPro.
13O27369    104   RPOM_METTH DNA-directed RNA polymerase subuni...1050.00000003     51.6     29     46
GO:0003677; F:DNA binding; IEA:InterPro.::GO:0003899; F:DNA-directed RNA polymerase activity; IEA:UniProtKB-KW.::GO:0003700; F:sequence-specific DNA binding transcription factor activity; IEA:InterPro.::GO:0008270; F:zinc ion binding; IEA:InterPro.
14Q07271    111   RPOM_SULAC DNA-directed RNA polymerase subuni...1130.0000001     50.1     23     45
GO:0003677; F:DNA binding; IEA:InterPro.::GO:0003899; F:DNA-directed RNA polymerase activity; IEA:UniProtKB-KW.::GO:0003700; F:sequence-specific DNA binding transcription factor activity; IEA:InterPro.::GO:0008270; F:zinc ion binding; IEA:InterPro.
15O29033    103   RPOM_ARCFU DNA-directed RNA polymerase subuni...1090.00004     42.7     28     39
GO:0003677; F:DNA binding; IEA:InterPro.::GO:0003899; F:DNA-directed RNA polymerase activity; IEA:UniProtKB-KW.::GO:0003700; F:sequence-specific DNA binding transcription factor activity; IEA:InterPro.::GO:0008270; F:zinc ion binding; IEA:InterPro.
16Q6MFY5    123   RPA12_RAT DNA-directed RNA polymerase I subun...1010.00004     43.1     24     42GO:0005730; C:nucleolus; IEA:UniProtKB-SubCell.
GO:0003899; F:DNA-directed RNA polymerase activity; IEA:UniProtKB-KW.::GO:0003676; F:nucleic acid binding; IEA:InterPro.::GO:0008270; F:zinc ion binding; IEA:InterPro.
17Q791N7    123   RPA12_MOUSE DNA-directed RNA polymerase I sub...1010.00004     42.7     25     42GO:0005730; C:nucleolus; IEA:UniProtKB-SubCell.::GO:0005654; C:nucleoplasm; TAS:Reactome.
GO:0003899; F:DNA-directed RNA polymerase activity; IEA:UniProtKB-KW.::GO:0003676; F:nucleic acid binding; IEA:InterPro.::GO:0008270; F:zinc ion binding; IEA:InterPro.
18Q9Y2Y1    108   RPC10_HUMAN DNA-directed RNA polymerase III s...1070.00006     42.4     28     38GO:0005666; C:DNA-directed RNA polymerase III complex; TAS:ProtInc.
GO:0003677; F:DNA binding; IEA:InterPro.::GO:0003899; F:DNA-directed RNA polymerase activity; TAS:ProtInc.::GO:0008270; F:zinc ion binding; IEA:InterPro.
GO:0045087; P:innate immune response; IEA:UniProtKB-KW.::GO:0009615; P:response to virus; IEA:UniProtKB-KW.::GO:0006386; P:termination of RNA polymerase III transcription; TAS:Reactome.::GO:0006385; P:transcription elongation from RNA polymerase III promoter; TAS:Reactome.
19Q9CQZ7    108   RPC10_MOUSE DNA-directed RNA polymerase III s...1070.00008     42     28     38GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0003677; F:DNA binding; IEA:InterPro.::GO:0003899; F:DNA-directed RNA polymerase activity; IEA:UniProtKB-KW.::GO:0008270; F:zinc ion binding; IEA:InterPro.
GO:0045087; P:innate immune response; IEA:UniProtKB-KW.::GO:0009615; P:response to virus; IEA:UniProtKB-KW.
20O13896    109   RPC10_SCHPO DNA-directed RNA polymerase III s...1030.0001     41.2     32     43GO:0005829; C:cytosol; IDA:PomBase.::GO:0005666; C:DNA-directed RNA polymerase III complex; TAS:PomBase.
GO:0003677; F:DNA binding; IEA:InterPro.::GO:0003899; F:DNA-directed RNA polymerase activity; TAS:PomBase.::GO:0008270; F:zinc ion binding; IEA:InterPro.
GO:0006384; P:transcription initiation from RNA polymerase III promoter; TAS:PomBase.::GO:0042779; P:tRNA 3'-trailer cleavage; IMP:PomBase.
21Q04307    110   RPC10_YEAST DNA-directed RNA polymerase III s...1100.0006     39.7     25     39GO:0005666; C:DNA-directed RNA polymerase III complex; IDA:SGD.
GO:0003677; F:DNA binding; IEA:InterPro.::GO:0003899; F:DNA-directed RNA polymerase activity; IEA:UniProtKB-KW.::GO:0008270; F:zinc ion binding; IEA:InterPro.
GO:0006386; P:termination of RNA polymerase III transcription; IMP:SGD.::GO:0042797; P:tRNA transcription from RNA polymerase III promoter; IMP:SGD.
22Q2M2S7    108   RPC10_BOVIN DNA-directed RNA polymerase III s...1070.0006     39.7     27     37GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0003677; F:DNA binding; IEA:InterPro.::GO:0003899; F:DNA-directed RNA polymerase activity; IEA:UniProtKB-KW.::GO:0008270; F:zinc ion binding; IEA:InterPro.
GO:0045087; P:innate immune response; IEA:UniProtKB-KW.::GO:0009615; P:response to virus; IEA:UniProtKB-KW.
23Q1XHV8    126   RPA12_PANTR DNA-directed RNA polymerase I sub...1010.006     37.4     23     39GO:0005730; C:nucleolus; IEA:UniProtKB-SubCell.
GO:0003899; F:DNA-directed RNA polymerase activity; IEA:UniProtKB-KW.::GO:0003676; F:nucleic acid binding; IEA:InterPro.::GO:0008270; F:zinc ion binding; IEA:InterPro.
24Q9P1U0    126   RPA12_HUMAN DNA-directed RNA polymerase I sub...1010.006     37.4     23     39GO:0005730; C:nucleolus; IEA:UniProtKB-SubCell.
GO:0003899; F:DNA-directed RNA polymerase activity; IEA:UniProtKB-KW.::GO:0003676; F:nucleic acid binding; IEA:InterPro.::GO:0008270; F:zinc ion binding; IEA:InterPro.
25Q5TM50    126   RPA12_MACMU DNA-directed RNA polymerase I sub...1010.012     36.6     23     39GO:0005730; C:nucleolus; IEA:UniProtKB-SubCell.
GO:0003899; F:DNA-directed RNA polymerase activity; IEA:UniProtKB-KW.::GO:0003676; F:nucleic acid binding; IEA:InterPro.::GO:0008270; F:zinc ion binding; IEA:InterPro.
26Q1RMP0    123   RPA12_BOVIN DNA-directed RNA polymerase I sub...1010.16     33.5     22     38GO:0005730; C:nucleolus; IEA:UniProtKB-SubCell.
GO:0003899; F:DNA-directed RNA polymerase activity; IEA:UniProtKB-KW.::GO:0003676; F:nucleic acid binding; IEA:InterPro.::GO:0008270; F:zinc ion binding; IEA:InterPro.
27Q6GZP4    92   081R_FRG3G Putative transcription elongation ...380.2     32.7     39     47
GO:0003746; F:translation elongation factor activity; IEA:UniProtKB-KW.::GO:0008270; F:zinc ion binding; IEA:InterPro.
GO:0006351; P:transcription, DNA-dependent; IEA:InterPro.
28Q00761    315   ACCD_PHYPA Acetyl-coenzyme A carboxylase carb...890.28     33.5     29     45GO:0009317; C:acetyl-CoA carboxylase complex; IEA:InterPro.::GO:0009570; C:chloroplast stroma; IEA:UniProtKB-SubCell.
GO:0003989; F:acetyl-CoA carboxylase activity; IEA:EC.::GO:0005524; F:ATP binding; IEA:UniProtKB-KW.::GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
GO:0006633; P:fatty acid biosynthetic process; IEA:UniProtKB-KW.
29O94703    119   RPA12_SCHPO DNA-directed RNA polymerase I sub...1291.3     31.2     22     36GO:0005829; C:cytosol; IDA:PomBase.::GO:0005736; C:DNA-directed RNA polymerase I complex; IGI:PomBase.
GO:0003677; F:DNA binding; IEA:InterPro.::GO:0003899; F:DNA-directed RNA polymerase activity; IEA:UniProtKB-KW.::GO:0008270; F:zinc ion binding; IEA:InterPro.
GO:0006360; P:transcription from RNA polymerase I promoter; IGI:PomBase.::GO:0006353; P:transcription termination, DNA-dependent; IGI:PomBase.
30P32529    125   RPA12_YEAST DNA-directed RNA polymerase I sub...371.3     31.2     32     51GO:0005736; C:DNA-directed RNA polymerase I complex; IDA:SGD.
GO:0003677; F:DNA binding; IEA:InterPro.::GO:0003899; F:DNA-directed RNA polymerase activity; IEA:UniProtKB-KW.::GO:0008270; F:zinc ion binding; IEA:InterPro.
GO:0006363; P:termination of RNA polymerase I transcription; IMP:SGD.::GO:0042790; P:transcription of nuclear large rRNA transcript from RNA polymerase I promoter; IGI:SGD.
31O64422    406   F16P1_ORYSJ Fructose-1,6-bisphosphatase, chlo...452     31.2     42     56GO:0009570; C:chloroplast stroma; IEA:UniProtKB-SubCell.
GO:0042132; F:fructose 1,6-bisphosphate 1-phosphatase activity; IEA:EC.::GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
GO:0019253; P:reductive pentose-phosphate cycle; IEA:UniProtKB-KW.
records
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