rec. | Subject | Hit Length | Description | Align.Len | E value | Bit score | % ident. | % pos. | GO associations |
1 | P25299 | 296 | RNA15_YEAST mRNA 3'-end-processing protein RN... | 296 | 0 | 603 | 100 | 100 | GO:0005849; C:mRNA cleavage factor complex; IPI:SGD. | | | | | | | | | | GO:0003729; F:mRNA binding; IDA:SGD.::GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0046982; F:protein heterodimerization activity; IPI:SGD. | | | | | | | | | | GO:0006379; P:mRNA cleavage; IDA:SGD.::GO:0006378; P:mRNA polyadenylation; IDA:SGD. | 2 | Q9P6P7 | 422 | YKCG_SCHPO Uncharacterized RNA-binding protei... | 229 | 3e-22 | 99 | 31 | 47 | GO:0005849; C:mRNA cleavage factor complex; ISS:PomBase. | | | | | | | | | | GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; ISS:PomBase. | | | | | | | | | | GO:0006379; P:mRNA cleavage; ISS:PomBase.::GO:0006378; P:mRNA polyadenylation; ISS:PomBase. | 3 | Q8HXM1 | 572 | CSTF2_BOVIN Cleavage stimulation factor subun... | 74 | 6e-18 | 87.4 | 47 | 76 | GO:0071920; C:cleavage body; ISS:UniProtKB.::GO:0005847; C:mRNA cleavage and polyadenylation specificity factor complex; ISS:UniProtKB. | | | | | | | | | | GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW. | | | | | | | | | | GO:0006397; P:mRNA processing; IEA:UniProtKB-KW. | 4 | P33240 | 577 | CSTF2_HUMAN Cleavage stimulation factor subun... | 74 | 7e-18 | 87 | 47 | 76 | GO:0071920; C:cleavage body; IDA:UniProtKB.::GO:0005847; C:mRNA cleavage and polyadenylation specificity factor complex; IDA:UniProtKB. | | | | | | | | | | GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0005515; F:protein binding; IPI:UniProtKB.::GO:0003723; F:RNA binding; TAS:ProtInc. | | | | | | | | | | GO:0006379; P:mRNA cleavage; TAS:ProtInc.::GO:0006378; P:mRNA polyadenylation; TAS:ProtInc.::GO:0000398; P:nuclear mRNA splicing, via spliceosome; TAS:Reactome.::GO:0006369; P:termination of RNA polymerase II transcription; TAS:Reactome. | 5 | Q5RDA3 | 577 | CSTF2_PONAB Cleavage stimulation factor subun... | 74 | 8e-18 | 87 | 47 | 76 | GO:0071920; C:cleavage body; ISS:UniProtKB.::GO:0005847; C:mRNA cleavage and polyadenylation specificity factor complex; ISS:UniProtKB. | | | | | | | | | | GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW. | | | | | | | | | | GO:0006397; P:mRNA processing; IEA:UniProtKB-KW. | 6 | Q8BIQ5 | 580 | CSTF2_MOUSE Cleavage stimulation factor subun... | 74 | 8e-18 | 87 | 47 | 76 | GO:0071920; C:cleavage body; ISS:UniProtKB.::GO:0005847; C:mRNA cleavage and polyadenylation specificity factor complex; ISS:UniProtKB. | | | | | | | | | | GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW. | | | | | | | | | | GO:0006397; P:mRNA processing; IEA:UniProtKB-KW. | 7 | O43040 | 363 | CTF1_SCHPO Cleavage and termination factor 1 ... | 78 | 1e-17 | 85.5 | 47 | 71 | GO:0005829; C:cytosol; IDA:PomBase.::GO:0005847; C:mRNA cleavage and polyadenylation specificity factor complex; IDA:PomBase. | | | | | | | | | | GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW. | | | | | | | | | | GO:0006378; P:mRNA polyadenylation; IC:PomBase. | 8 | Q8C7E9 | 632 | CSTFT_MOUSE Cleavage stimulation factor subun... | 74 | 2e-16 | 82.8 | 46 | 74 | GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. | | | | | | | | | | GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IDA:MGI. | | | | | | | | | | GO:0006378; P:mRNA polyadenylation; TAS:MGI. | 9 | Q9H0L4 | 616 | CSTFT_HUMAN Cleavage stimulation factor subun... | 74 | 2e-16 | 82.8 | 46 | 74 | GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. | | | | | | | | | | GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW. | | | | | | | | | | GO:0006397; P:mRNA processing; IEA:UniProtKB-KW. | 10 | Q9P3U1 | 464 | YKX5_SCHPO Uncharacterized RNA-binding protei... | 80 | 0.24 | 36.6 | 24 | 51 | GO:0005829; C:cytosol; IDA:PomBase.::GO:0030530; C:heterogeneous nuclear ribonucleoprotein complex; ISS:PomBase. | | | | | | | | | | GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; ISS:PomBase. | | | | | | | | | | GO:0016973; P:poly(A)+ mRNA export from nucleus; ISS:PomBase. | 11 | Q8VH51 | 530 | RBM39_MOUSE RNA-binding protein 39 OS=Mus mus... | 60 | 0.66 | 35 | 30 | 53 | GO:0005634; C:nucleus; TAS:MGI. | | | | | | | | | | GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0005515; F:protein binding; IPI:MGI.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.::GO:0003713; F:transcription coactivator activity; TAS:MGI. | | | | | | | | | | GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0006355; P:regulation of transcription, DNA-dependent; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.::GO:0006351; P:transcription, DNA-dependent; TAS:MGI. | 12 | Q5RC80 | 524 | RBM39_PONAB RNA-binding protein 39 OS=Pongo a... | 60 | 0.63 | 35.4 | 30 | 53 | GO:0016607; C:nuclear speck; IEA:UniProtKB-SubCell. | | | | | | | | | | GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW. | | | | | | | | | | GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0006355; P:regulation of transcription, DNA-dependent; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW. | 13 | Q14498 | 530 | RBM39_HUMAN RNA-binding protein 39 OS=Homo sa... | 60 | 0.69 | 35 | 30 | 53 | GO:0005813; C:centrosome; IDA:HPA.::GO:0016607; C:nuclear speck; IEA:UniProtKB-SubCell.::GO:0005634; C:nucleus; IDA:HPA. | | | | | | | | | | GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0005515; F:protein binding; IPI:UniProtKB.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW. | | | | | | | | | | GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0006355; P:regulation of transcription, DNA-dependent; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW. | 14 | Q9Y388 | 322 | RBMX2_HUMAN RNA-binding motif protein, X-link... | 97 | 0.0000000002 | 63.9 | 32 | 60 | | | | | | | | | | | GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW. | | | | | | | | | | | 15 | Q86U06 | 439 | RBM23_HUMAN Probable RNA-binding protein 23 O... | 68 | 1 | 34.7 | 29 | 54 | GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. | | | | | | | | | | GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW. | | | | | | | | | | GO:0006397; P:mRNA processing; IEA:InterPro. | 16 | P53883 | 403 | NOP13_YEAST Nucleolar protein 13 OS=Saccharom... | 140 | 0.0000000003 | 63.9 | 26 | 56 | GO:0005730; C:nucleolus; IDA:SGD.::GO:0030684; C:preribosome; IDA:SGD. | | | | | | | | | | GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW. | | | | | | | | | | | 17 | B0BN49 | 328 | RBMX2_RAT RNA-binding motif protein, X-linked... | 97 | 0.0000000009 | 62.4 | 30 | 60 | | | | | | | | | | | GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW. | | | | | | | | | | | 18 | Q10B98 | 312 | C3H25_ORYSJ Zinc finger CCCH domain-containin... | 79 | 0.000000001 | 62 | 38 | 63 | | | | | | | | | | | GO:0003677; F:DNA binding; IEA:UniProtKB-KW.::GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.::GO:0008270; F:zinc ion binding; IEA:InterPro. | | | | | | | | | | | 19 | Q9SD61 | 352 | C3H42_ARATH Zinc finger CCCH domain-containin... | 101 | 0.000000001 | 62 | 34 | 58 | | | | | | | | | | | GO:0003677; F:DNA binding; IEA:UniProtKB-KW.::GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.::GO:0008270; F:zinc ion binding; IEA:InterPro. | | | | | | | | | | | 20 | Q8R0F5 | 326 | RBMX2_MOUSE RNA-binding motif protein, X-link... | 97 | 0.000000002 | 61.6 | 30 | 60 | | | | | | | | | | | GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW. | | | | | | | | | | | 21 | Q3SZM1 | 296 | MK67I_BOVIN MKI67 FHA domain-interacting nucl... | 91 | 0.000000002 | 60.8 | 32 | 46 | GO:0005730; C:nucleolus; IEA:UniProtKB-SubCell. | | | | | | | | | | GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW. | | | | | | | | | | GO:0010923; P:negative regulation of phosphatase activity; ISS:UniProtKB. | 22 | O43390 | 633 | HNRPR_HUMAN Heterogeneous nuclear ribonucleop... | 79 | 0.031 | 39.3 | 32 | 58 | GO:0071013; C:catalytic step 2 spliceosome; IDA:UniProtKB.::GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0030530; C:heterogeneous nuclear ribonucleoprotein complex; TAS:ProtInc.::GO:0005654; C:nucleoplasm; TAS:Reactome. | | | | | | | | | | GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0005515; F:protein binding; IPI:IntAct.::GO:0003723; F:RNA binding; TAS:ProtInc. | | | | | | | | | | GO:0000398; P:nuclear mRNA splicing, via spliceosome; IC:UniProtKB. | 23 | Q5RJM0 | 271 | MK67I_RAT MKI67 FHA domain-interacting nucleo... | 77 | 0.000000005 | 59.7 | 32 | 52 | GO:0005730; C:nucleolus; IEA:UniProtKB-SubCell. | | | | | | | | | | GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW. | | | | | | | | | | GO:0010923; P:negative regulation of phosphatase activity; ISS:UniProtKB. | 24 | Q91VE6 | 317 | MK67I_MOUSE MKI67 FHA domain-interacting nucl... | 81 | 0.000000007 | 59.7 | 31 | 49 | GO:0005730; C:nucleolus; IEA:UniProtKB-SubCell. | | | | | | | | | | GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW. | | | | | | | | | | GO:0010923; P:negative regulation of phosphatase activity; ISS:UniProtKB. | 25 | P40565 | 148 | IST3_YEAST U2 snRNP component IST3 OS=Sacchar... | 75 | 0.000000007 | 57.4 | 35 | 64 | GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0070274; C:RES complex; IDA:SGD.::GO:0005681; C:spliceosomal complex; IEA:UniProtKB-KW.::GO:0005686; C:U2 snRNP; IDA:SGD. | | | | | | | | | | GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0005515; F:protein binding; IPI:IntAct.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW. | | | | | | | | | | GO:0000349; P:generation of catalytic spliceosome for first transesterification step; IMP:SGD.::GO:0006406; P:mRNA export from nucleus; IMP:SGD.::GO:0000245; P:spliceosomal complex assembly; IMP:SGD. | 26 | O74978 | 276 | YQL5_SCHPO Uncharacterized RNA-binding protei... | 73 | 0.000000008 | 58.9 | 37 | 59 | GO:0005730; C:nucleolus; IDA:PomBase. | | | | | | | | | | GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW. | | | | | | | | | | GO:0042254; P:ribosome biogenesis; ISS:PomBase. | 27 | Q5SP50 | 218 | ZCRB1_DANRE Zinc finger CCHC-type and RNA-bin... | 76 | 0.000000008 | 58.2 | 38 | 55 | GO:0005681; C:spliceosomal complex; IEA:UniProtKB-KW. | | | | | | | | | | GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.::GO:0008270; F:zinc ion binding; IEA:InterPro. | | | | | | | | | | GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW. | 28 | O94290 | 217 | IST3_SCHPO U2 snRNP component ist3 OS=Schizos... | 82 | 0.00000001 | 58.2 | 30 | 61 | GO:0005681; C:spliceosomal complex; NAS:PomBase.::GO:0005686; C:U2 snRNP; ISS:PomBase. | | | | | | | | | | GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW. | | | | | | | | | | GO:0000245; P:spliceosomal complex assembly; ISS:PomBase. | 29 | Q2QKB3 | 591 | U2A2A_WHEAT Splicing factor U2af large subuni... | 84 | 0.00000001 | 59.7 | 38 | 56 | GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. | | | | | | | | | | GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW. | | | | | | | | | | GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW. | 30 | Q8T6B9 | 637 | PUF68_DROME Poly(U)-binding-splicing factor h... | 75 | 0.00005 | 48.1 | 31 | 53 | GO:0071013; C:catalytic step 2 spliceosome; IDA:FlyBase.::GO:0071011; C:precatalytic spliceosome; IDA:FlyBase.::GO:0043234; C:protein complex; IPI:FlyBase. | | | | | | | | | | GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0008266; F:poly(U) RNA binding; ISS:FlyBase.::GO:0005515; F:protein binding; IPI:FlyBase. | | | | | | | | | | GO:0000380; P:alternative nuclear mRNA splicing, via spliceosome; IMP:FlyBase.::GO:0007282; P:cystoblast division; IMP:FlyBase.::GO:0006376; P:mRNA splice site selection; IMP:FlyBase.::GO:0007275; P:multicellular organismal development; IEA:UniProtKB-KW.::GO:0048477; P:oogenesis; IEA:UniProtKB-KW.::GO:0000381; P:regulation of alternative nuclear mRNA splicing, via spliceosome; IMP:FlyBase.::GO:0001558; P:regulation of cell growth; IMP:FlyBase. | 31 | P19684 | 324 | ROC5_NICSY 33 kDa ribonucleoprotein, chloropl... | 71 | 0.023 | 39.7 | 27 | 58 | GO:0009507; C:chloroplast; IEA:UniProtKB-SubCell.::GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW. | | | | | | | | | | GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW. | | | | | | | | | | GO:0006397; P:mRNA processing; IEA:UniProtKB-KW. |