Fungal Genome Collection
University of Nebraska Lincoln
School of Biological Sciences and Center for Plant Science Innovation
Home About FGC Use Cases Species List

UniProt_SwissProt BLAST: Single locus
Species:
Saccharomyces cerevisiae S288C
Locus:
YFR037C
Length:
557
Number of sequences:
5887
Description:
YFR037C RSC8 SGDID:S000001933, Chr VI from 229186-227513, Genome Release 64-1-1, reverse complement, Verified ORF, "Component of the RSC chromatin remodeling complex; essential for viability and mitotic growth; homolog of SWI/SNF subunit Swi3p, but unlike Swi3p, does not activate transcription of reporters"
rec.SubjectHit LengthDescriptionAlign.LenE valueBit score% ident.  % pos.GO associations
1P43609    557   RSC8_YEAST Chromatin structure-remodeling com...5570     1152     100     100GO:0016586; C:RSC complex; IDA:UniProtKB.
GO:0003677; F:DNA binding; IDA:SGD.::GO:0005515; F:protein binding; IPI:UniProtKB.::GO:0008270; F:zinc ion binding; IEA:InterPro.
GO:0043044; P:ATP-dependent chromatin remodeling; IDA:UniProtKB.::GO:0006303; P:double-strand break repair via nonhomologous end joining; IMP:SGD.::GO:0000082; P:G1/S transition of mitotic cell cycle; IMP:SGD.::GO:0006337; P:nucleosome disassembly; IDA:SGD.::GO:0006355; P:regulation of transcription, DNA-dependent; IMP:UniProtKB.::GO:0006368; P:transcription elongation from RNA polymerase II promoter; IDA:SGD.
2O14470    503   SSR2_SCHPO SWI/SNF and RSC complexes subunit ...4582e-80     267     36     56GO:0005737; C:cytoplasm; IDA:PomBase.::GO:0000790; C:nuclear chromatin; IC:PomBase.::GO:0016586; C:RSC complex; IDA:PomBase.::GO:0016514; C:SWI/SNF complex; IDA:PomBase.
GO:0003677; F:DNA binding; IEA:UniProtKB-KW.::GO:0008270; F:zinc ion binding; IEA:InterPro.
GO:0006338; P:chromatin remodeling; NAS:PomBase.::GO:0006357; P:regulation of transcription from RNA polymerase II promoter; IC:PomBase.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW.
3O13788    527   SSR1_SCHPO SWI/SNF and RSC complexes subunit ...3136e-61     215     39     58GO:0005829; C:cytosol; IDA:PomBase.::GO:0000790; C:nuclear chromatin; IC:PomBase.::GO:0016586; C:RSC complex; IDA:PomBase.::GO:0016514; C:SWI/SNF complex; IDA:PomBase.
GO:0003677; F:DNA binding; IEA:InterPro.
GO:0006338; P:chromatin remodeling; ISS:PomBase.::GO:0000122; P:negative regulation of transcription from RNA polymerase II promoter; NAS:PomBase.::GO:0045944; P:positive regulation of transcription from RNA polymerase II promoter; NAS:PomBase.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW.
4P32591    825   SWI3_YEAST SWI/SNF complex subunit SWI3 OS=Sa...5024e-48     182     29     47GO:0016514; C:SWI/SNF complex; IDA:SGD.
GO:0003677; F:DNA binding; IMP:SGD.::GO:0005515; F:protein binding; IPI:UniProtKB.
GO:0043044; P:ATP-dependent chromatin remodeling; IDA:SGD.::GO:0000436; P:carbon catabolite activation of transcription from RNA polymerase II promoter; IMP:SGD.::GO:0044109; P:cellular alcohol catabolic process; IMP:SGD.::GO:0031496; P:positive regulation of mating type switching; IMP:SGD.::GO:0005987; P:sucrose catabolic process; IMP:SGD.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW.
5Q8TAQ2    1214   SMRC2_HUMAN SWI/SNF complex subunit SMARCC2 O...1480.0005     47     32     51GO:0071565; C:nBAF complex; ISS:UniProtKB.::GO:0071564; C:npBAF complex; ISS:UniProtKB.::GO:0016514; C:SWI/SNF complex; IDA:UniProtKB.
GO:0003677; F:DNA binding; IEA:InterPro.::GO:0005515; F:protein binding; IPI:UniProtKB.::GO:0003713; F:transcription coactivator activity; NAS:BHF-UCL.
GO:0006338; P:chromatin remodeling; IDA:UniProtKB.::GO:0045892; P:negative regulation of transcription, DNA-dependent; IDA:UniProtKB.::GO:0007399; P:nervous system development; IEA:UniProtKB-KW.::GO:0006337; P:nucleosome disassembly; IDA:BHF-UCL.::GO:0045893; P:positive regulation of transcription, DNA-dependent; IDA:UniProtKB.::GO:0006357; P:regulation of transcription from RNA polymerase II promoter; NAS:BHF-UCL.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW.
6Q6PDG5    1213   SMRC2_MOUSE SWI/SNF complex subunit SMARCC2 O...1480.0004     47     32     51GO:0071565; C:nBAF complex; IDA:UniProtKB.::GO:0071564; C:npBAF complex; IDA:UniProtKB.
GO:0003677; F:DNA binding; IEA:InterPro.
GO:0007399; P:nervous system development; IEA:UniProtKB-KW.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW.
7Q92922    1105   SMRC1_HUMAN SWI/SNF complex subunit SMARCC1 O...860.0002     47.8     42     60GO:0071565; C:nBAF complex; ISS:UniProtKB.::GO:0071564; C:npBAF complex; ISS:UniProtKB.::GO:0016514; C:SWI/SNF complex; IDA:UniProtKB.::GO:0071778; C:WINAC complex; IDA:BHF-UCL.
GO:0003677; F:DNA binding; IEA:InterPro.::GO:0047485; F:protein N-terminus binding; IPI:UniProtKB.::GO:0003713; F:transcription coactivator activity; NAS:BHF-UCL.
GO:0006338; P:chromatin remodeling; IDA:UniProtKB.::GO:0007399; P:nervous system development; IEA:UniProtKB-KW.::GO:0006337; P:nucleosome disassembly; IDA:BHF-UCL.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW.
8P97496    1104   SMRC1_MOUSE SWI/SNF complex subunit SMARCC1 O...860.0002     48.1     42     60GO:0071565; C:nBAF complex; IDA:UniProtKB.::GO:0071564; C:npBAF complex; IDA:UniProtKB.::GO:0005625; C:soluble fraction; IDA:MGI.::GO:0016514; C:SWI/SNF complex; IDA:MGI.::GO:0001741; C:XY body; IDA:UniProtKB.
GO:0003682; F:chromatin binding; IDA:MGI.::GO:0003677; F:DNA binding; IEA:InterPro.
GO:0006323; P:DNA packaging; TAS:MGI.::GO:0008286; P:insulin receptor signaling pathway; IDA:MGI.::GO:0007399; P:nervous system development; IEA:UniProtKB-KW.::GO:0009887; P:organ morphogenesis; IMP:MGI.::GO:0045944; P:positive regulation of transcription from RNA polymerase II promoter; IGI:MGI.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW.
9Q8W475    512   SWI3A_ARATH SWI/SNF complex subunit SWI3A OS=...2841e-32     134     33     49GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
GO:0016568; P:chromatin modification; IEA:UniProtKB-KW.::GO:0007275; P:multicellular organismal development; IEA:UniProtKB-KW.::GO:0006355; P:regulation of transcription, DNA-dependent; IEA:UniProtKB-KW.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW.
10Q84JG2    469   SWI3B_ARATH SWI/SNF complex subunit SWI3B OS=...2852e-32     132     31     45GO:0005634; C:nucleus; IDA:TAIR.
GO:0003677; F:DNA binding; IEA:UniProtKB-KW.::GO:0005515; F:protein binding; IPI:IntAct.
GO:0016568; P:chromatin modification; IEA:UniProtKB-KW.::GO:0007275; P:multicellular organismal development; IEA:UniProtKB-KW.::GO:0006355; P:regulation of transcription, DNA-dependent; IEA:UniProtKB-KW.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW.
11Q9XI07    807   SWI3C_ARATH SWI/SNF complex subunit SWI3C OS=...3263e-29     126     27     46GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0003677; F:DNA binding; IEA:UniProtKB-KW.::GO:0005515; F:protein binding; IPI:IntAct.
GO:0016568; P:chromatin modification; IEA:UniProtKB-KW.::GO:0007275; P:multicellular organismal development; IEA:UniProtKB-KW.::GO:0006355; P:regulation of transcription, DNA-dependent; IEA:UniProtKB-KW.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW.
12Q8VY05    985   SWI3D_ARATH SWI/SNF complex subunit SWI3D OS=...3036e-22     103     29     49GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0003677; F:DNA binding; IEA:UniProtKB-KW.::GO:0008270; F:zinc ion binding; IEA:InterPro.
GO:0016568; P:chromatin modification; IEA:UniProtKB-KW.::GO:0007275; P:multicellular organismal development; IEA:UniProtKB-KW.::GO:0006355; P:regulation of transcription, DNA-dependent; IEA:UniProtKB-KW.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW.
13Q54J55    1620   MYBX_DICDI Myb-like protein X OS=Dictyosteliu...720.00003     50.8     33     60GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0003677; F:DNA binding; IEA:InterPro.
14Q5RGA4    822   MYSM1_DANRE Histone H2A deubiquitinase MYSM1 ...850.000002     54.7     38     58GO:0016585; C:chromatin remodeling complex; ISS:UniProtKB.
GO:0003677; F:DNA binding; IEA:UniProtKB-KW.::GO:0042393; F:histone binding; ISS:UniProtKB.::GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.::GO:0008237; F:metallopeptidase activity; ISS:UniProtKB.::GO:0003713; F:transcription coactivator activity; ISS:UniProtKB.::GO:0004221; F:ubiquitin thiolesterase activity; ISS:UniProtKB.::GO:0004843; F:ubiquitin-specific protease activity; ISS:UniProtKB.
GO:0016578; P:histone deubiquitination; ISS:UniProtKB.::GO:0045893; P:positive regulation of transcription, DNA-dependent; ISS:UniProtKB.::GO:0006508; P:proteolysis; IEA:UniProtKB-KW.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW.
15Q5RBN9    420   TAD2B_PONAB Transcriptional adapter 2-beta OS...1260.000004     52.8     27     44GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0003677; F:DNA binding; IEA:InterPro.::GO:0008270; F:zinc ion binding; IEA:InterPro.
GO:0006355; P:regulation of transcription, DNA-dependent; IEA:UniProtKB-KW.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW.
16Q86TJ2    420   TAD2B_HUMAN Transcriptional adapter 2-beta OS...1260.000004     52.8     27     44
GO:0003677; F:DNA binding; IEA:InterPro.::GO:0008270; F:zinc ion binding; IEA:InterPro.
GO:0006355; P:regulation of transcription, DNA-dependent; IEA:UniProtKB-KW.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW.
17Q69Z66    819   MYSM1_MOUSE Histone H2A deubiquitinase MYSM1 ...820.000006     53.1     37     59GO:0016585; C:chromatin remodeling complex; ISS:UniProtKB.
GO:0003677; F:DNA binding; IEA:UniProtKB-KW.::GO:0042393; F:histone binding; ISS:UniProtKB.::GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.::GO:0008237; F:metallopeptidase activity; ISS:UniProtKB.::GO:0003713; F:transcription coactivator activity; ISS:UniProtKB.::GO:0004221; F:ubiquitin thiolesterase activity; ISS:UniProtKB.::GO:0004843; F:ubiquitin-specific protease activity; ISS:UniProtKB.
GO:0016578; P:histone deubiquitination; ISS:UniProtKB.::GO:0045893; P:positive regulation of transcription, DNA-dependent; ISS:UniProtKB.::GO:0006508; P:proteolysis; IEA:UniProtKB-KW.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW.
18Q5VVJ2    828   MYSM1_HUMAN Histone H2A deubiquitinase MYSM1 ...820.000007     52.8     37     59GO:0016585; C:chromatin remodeling complex; IDA:UniProtKB.
GO:0003677; F:DNA binding; IEA:UniProtKB-KW.::GO:0042393; F:histone binding; IDA:UniProtKB.::GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.::GO:0008237; F:metallopeptidase activity; IMP:UniProtKB.::GO:0003713; F:transcription coactivator activity; IDA:UniProtKB.::GO:0004221; F:ubiquitin thiolesterase activity; IDA:UniProtKB.::GO:0004843; F:ubiquitin-specific protease activity; IDA:UniProtKB.
GO:0016578; P:histone deubiquitination; IDA:UniProtKB.::GO:0045893; P:positive regulation of transcription, DNA-dependent; IDA:UniProtKB.::GO:0006508; P:proteolysis; IEA:UniProtKB-KW.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW.
19Q503N9    486   TAD2B_DANRE Transcriptional adapter 2-beta OS...1260.000009     52     25     43GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0003677; F:DNA binding; IEA:InterPro.::GO:0008270; F:zinc ion binding; IEA:InterPro.
GO:0006355; P:regulation of transcription, DNA-dependent; IEA:UniProtKB-KW.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW.
20B6MUN4    809   MYSM1_BRAFL Histone H2A deubiquitinase MYSM1 ...1110.000009     52.4     34     50GO:0016585; C:chromatin remodeling complex; ISS:UniProtKB.
GO:0003677; F:DNA binding; IEA:UniProtKB-KW.::GO:0042393; F:histone binding; ISS:UniProtKB.::GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.::GO:0008237; F:metallopeptidase activity; ISS:UniProtKB.::GO:0003713; F:transcription coactivator activity; ISS:UniProtKB.::GO:0004221; F:ubiquitin thiolesterase activity; ISS:UniProtKB.::GO:0004843; F:ubiquitin-specific protease activity; ISS:UniProtKB.
GO:0016578; P:histone deubiquitination; ISS:UniProtKB.::GO:0045893; P:positive regulation of transcription, DNA-dependent; ISS:UniProtKB.::GO:0006508; P:proteolysis; IEA:UniProtKB-KW.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW.
21Q9SFD5    548   TAD2A_ARATH Transcriptional adapter ADA2a OS=...1020.00001     51.6     33     51GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0003677; F:DNA binding; IEA:UniProtKB-KW.::GO:0008270; F:zinc ion binding; IEA:InterPro.
GO:0006355; P:regulation of transcription, DNA-dependent; IEA:UniProtKB-KW.::GO:0009409; P:response to cold; IMP:TAIR.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW.
22Q75LL6    567   TADA2_ORYSJ Transcriptional adapter ADA2 OS=O...1040.00001     51.6     31     53GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0003677; F:DNA binding; IEA:UniProtKB-KW.::GO:0008270; F:zinc ion binding; IEA:InterPro.
GO:0006355; P:regulation of transcription, DNA-dependent; IEA:UniProtKB-KW.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW.
23Q5F3F2    832   MYSM1_CHICK Histone H2A deubiquitinase MYSM1 ...820.00001     52     38     57GO:0016585; C:chromatin remodeling complex; ISS:UniProtKB.
GO:0003677; F:DNA binding; IEA:UniProtKB-KW.::GO:0042393; F:histone binding; ISS:UniProtKB.::GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.::GO:0008237; F:metallopeptidase activity; ISS:UniProtKB.::GO:0003713; F:transcription coactivator activity; ISS:UniProtKB.::GO:0004221; F:ubiquitin thiolesterase activity; ISS:UniProtKB.::GO:0004843; F:ubiquitin-specific protease activity; ISS:UniProtKB.
GO:0016578; P:histone deubiquitination; ISS:UniProtKB.::GO:0045893; P:positive regulation of transcription, DNA-dependent; ISS:UniProtKB.::GO:0006508; P:proteolysis; IEA:UniProtKB-KW.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW.
24Q9P7J7    437   ADA2_SCHPO Transcriptional adapter 2 OS=Schiz...1110.00002     50.8     31     49GO:0000790; C:nuclear chromatin; NAS:PomBase.::GO:0000124; C:SAGA complex; IDA:PomBase.
GO:0003677; F:DNA binding; IEA:InterPro.::GO:0003713; F:transcription coactivator activity; ISS:PomBase.::GO:0008270; F:zinc ion binding; IEA:InterPro.
GO:0071470; P:cellular response to osmotic stress; IMP:UniProtKB.::GO:0006338; P:chromatin remodeling; IC:PomBase.::GO:0006310; P:DNA recombination; IEA:UniProtKB-KW.::GO:0044154; P:histone H3-K14 acetylation; TAS:PomBase.::GO:0043971; P:histone H3-K18 acetylation; TAS:PomBase.::GO:0043972; P:histone H3-K23 acetylation; TAS:PomBase.::GO:0043970; P:histone H3-K9 acetylation; TAS:PomBase.::GO:0007126; P:meiosis; IEA:UniProtKB-KW.::GO:0010520; P:regulation of reciprocal meiotic recombination; IMP:UniProtKB.::GO:0006357; P:regulation of transcription from RNA polymerase II promoter; IMP:PomBase.::GO:0006366; P:transcription from RNA polymerase II promoter; IC:PomBase.
25Q6NRB5    420   TAD2B_XENLA Transcriptional adapter 2-beta OS...1260.00005     49.7     25     44GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0003677; F:DNA binding; IEA:InterPro.::GO:0008270; F:zinc ion binding; IEA:InterPro.
GO:0006355; P:regulation of transcription, DNA-dependent; IEA:UniProtKB-KW.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW.
26A0JMR6    818   MYSM1_XENLA Histone H2A deubiquitinase MYSM1 ...730.0005     47     37     58GO:0016585; C:chromatin remodeling complex; ISS:UniProtKB.
GO:0003677; F:DNA binding; IEA:UniProtKB-KW.::GO:0042393; F:histone binding; ISS:UniProtKB.::GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.::GO:0008237; F:metallopeptidase activity; ISS:UniProtKB.::GO:0003713; F:transcription coactivator activity; ISS:UniProtKB.::GO:0004221; F:ubiquitin thiolesterase activity; ISS:UniProtKB.::GO:0004843; F:ubiquitin-specific protease activity; ISS:UniProtKB.
GO:0016578; P:histone deubiquitination; ISS:UniProtKB.::GO:0045893; P:positive regulation of transcription, DNA-dependent; ISS:UniProtKB.::GO:0006508; P:proteolysis; IEA:UniProtKB-KW.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW.
27Q8I8V0    555   TAD2B_DROME Transcriptional adapter 2B OS=Dro...1060.001     45.4     27     47GO:0005700; C:polytene chromosome; IDA:FlyBase.::GO:0000124; C:SAGA complex; IDA:FlyBase.
GO:0003677; F:DNA binding; IEA:UniProtKB-KW.::GO:0005515; F:protein binding; IPI:UniProtKB.::GO:0008270; F:zinc ion binding; IEA:InterPro.
GO:0007412; P:axon target recognition; IMP:FlyBase.::GO:0006338; P:chromatin remodeling; IDA:UniProtKB.::GO:0043966; P:histone H3 acetylation; IMP:FlyBase.::GO:0035066; P:positive regulation of histone acetylation; IMP:FlyBase.::GO:0006355; P:regulation of transcription, DNA-dependent; IDA:UniProtKB.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW.::GO:0035222; P:wing disc pattern formation; IGI:FlyBase.
28Q02336    434   ADA2_YEAST Transcriptional adapter 2 OS=Sacch...1100.013     42     27     46GO:0005671; C:Ada2/Gcn5/Ada3 transcription activator complex; IDA:SGD.::GO:0000124; C:SAGA complex; IDA:SGD.::GO:0046695; C:SLIK (SAGA-like) complex; IDA:SGD.
GO:0003682; F:chromatin binding; IDA:SGD.::GO:0003677; F:DNA binding; IEA:InterPro.::GO:0001786; F:phosphatidylserine binding; IDA:SGD.::GO:0005515; F:protein binding; IPI:IntAct.::GO:0003713; F:transcription coactivator activity; IDA:SGD.::GO:0008270; F:zinc ion binding; IEA:InterPro.
GO:0000183; P:chromatin silencing at rDNA; IMP:SGD.::GO:0006348; P:chromatin silencing at telomere; IMP:SGD.::GO:0016573; P:histone acetylation; IDA:GOC.::GO:0035066; P:positive regulation of histone acetylation; IMP:SGD.::GO:0006357; P:regulation of transcription from RNA polymerase II promoter; IMP:SGD.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW.
29Q9ATB4    487   TAD2B_ARATH Transcriptional adapter ADA2b OS=...1040.04     40.4     28     46GO:0005634; C:nucleus; IDA:TAIR.
GO:0003677; F:DNA binding; IEA:UniProtKB-KW.::GO:0005515; F:protein binding; IPI:IntAct.::GO:0003713; F:transcription coactivator activity; IDA:TAIR.::GO:0008270; F:zinc ion binding; IEA:InterPro.
GO:0009631; P:cold acclimation; IMP:TAIR.::GO:0042127; P:regulation of cell proliferation; IMP:TAIR.::GO:0006355; P:regulation of transcription, DNA-dependent; IEA:UniProtKB-KW.::GO:0009733; P:response to auxin stimulus; IMP:TAIR.::GO:0009735; P:response to cytokinin stimulus; IMP:TAIR.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW.
30P0C881    870   R10B1_HUMAN Radial spoke head 10 homolog B OS...1290.79     36.2     26     40
31B2RC85    870   R10B2_HUMAN Radial spoke head 10 homolog B2 O...1290.84     36.2     26     40
records
Previous ‹‹ ›› Next Total records: 40 1 - 30
Elimate unknown annotation:
Filter for keyword on hit description:
Select upper E value:
Select lower bit score:
Select lower %idenity value:
Select lower %positive value:
Taxonomic division:
Lower limit on hit length:
Lower limit on alignment length::