Fungal Genome Collection
University of Nebraska Lincoln
School of Biological Sciences and Center for Plant Science Innovation
Home About FGC Use Cases Species List

UniProt_SwissProt BLAST: Single locus
Species:
Saccharomyces cerevisiae S288C
Locus:
YFR001W
Length:
204
Number of sequences:
5887
Description:
YFR001W LOC1 SGDID:S000001897, Chr VI from 149110-149724, Genome Release 64-1-1, Verified ORF, "Nuclear protein involved in asymmetric localization of ASH1 mRNA; binds double-stranded RNA in vitro; constituent of 66S pre-ribosomal particles"
rec.SubjectHit LengthDescriptionAlign.LenE valueBit score% ident.  % pos.GO associations
1P43586    204   LOC1_YEAST 60S ribosomal subunit assembly/exp...2042e-140     397     100     100GO:0005730; C:nucleolus; IDA:SGD.::GO:0030687; C:preribosome, large subunit precursor; IDA:SGD.
GO:0003729; F:mRNA binding; IDA:SGD.::GO:0005515; F:protein binding; IPI:IntAct.
GO:0000480; P:endonucleolytic cleavage in 5'-ETS of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA); IMP:SGD.::GO:0000447; P:endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA); IMP:SGD.::GO:0000472; P:endonucleolytic cleavage to generate mature 5'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA); IMP:SGD.::GO:0008298; P:intracellular mRNA localization; IMP:SGD.::GO:0051028; P:mRNA transport; IEA:UniProtKB-KW.::GO:0042273; P:ribosomal large subunit biogenesis; IMP:SGD.
2A7A239    204   LOC1_YEAS7 60S ribosomal subunit assembly/exp...2042e-140     397     100     100GO:0005730; C:nucleolus; IEA:UniProtKB-SubCell.
GO:0051028; P:mRNA transport; IEA:UniProtKB-KW.::GO:0042254; P:ribosome biogenesis; IEA:UniProtKB-KW.
3Q6CN96    207   LOC1_KLULA 60S ribosomal subunit assembly/exp...2084e-70     219     65     80GO:0005730; C:nucleolus; IEA:UniProtKB-SubCell.
GO:0051028; P:mRNA transport; IEA:UniProtKB-KW.::GO:0042254; P:ribosome biogenesis; IEA:UniProtKB-KW.
4Q6FUM3    203   LOC1_CANGA 60S ribosomal subunit assembly/exp...1963e-65     206     68     82GO:0005730; C:nucleolus; IEA:UniProtKB-SubCell.
GO:0051028; P:mRNA transport; IEA:UniProtKB-KW.::GO:0042254; P:ribosome biogenesis; IEA:UniProtKB-KW.
5Q750F4    199   LOC1_ASHGO 60S ribosomal subunit assembly/exp...1997e-65     205     65     78GO:0005730; C:nucleolus; IEA:UniProtKB-SubCell.
GO:0051028; P:mRNA transport; IEA:UniProtKB-KW.::GO:0042254; P:ribosome biogenesis; IEA:UniProtKB-KW.
6A3GHA4    204   LOC1_PICST 60S ribosomal subunit assembly/exp...2084e-57     185     58     72GO:0005730; C:nucleolus; IEA:UniProtKB-SubCell.
GO:0051028; P:mRNA transport; IEA:UniProtKB-KW.::GO:0042254; P:ribosome biogenesis; IEA:UniProtKB-KW.
7Q5AJF1    206   LOC1_CANAL 60S ribosomal subunit assembly/exp...1813e-55     181     63     76GO:0005730; C:nucleolus; IEA:UniProtKB-SubCell.
GO:0051028; P:mRNA transport; IEA:UniProtKB-KW.::GO:0042254; P:ribosome biogenesis; IEA:UniProtKB-KW.
8Q6BRC6    202   LOC1_DEBHA 60S ribosomal subunit assembly/exp...2086e-51     169     55     70GO:0005730; C:nucleolus; IEA:UniProtKB-SubCell.
GO:0051028; P:mRNA transport; IEA:UniProtKB-KW.::GO:0042254; P:ribosome biogenesis; IEA:UniProtKB-KW.
9A5DZY1    204   LOC1_LODEL 60S ribosomal subunit assembly/exp...2123e-46     157     58     72GO:0005730; C:nucleolus; IEA:UniProtKB-SubCell.
GO:0051028; P:mRNA transport; IEA:UniProtKB-KW.::GO:0042254; P:ribosome biogenesis; IEA:UniProtKB-KW.
10A5DBJ8    200   LOC1_PICGU 60S ribosomal subunit assembly/exp...1991e-36     132     58     73GO:0005730; C:nucleolus; IEA:UniProtKB-SubCell.
GO:0051028; P:mRNA transport; IEA:UniProtKB-KW.::GO:0042254; P:ribosome biogenesis; IEA:UniProtKB-KW.
11Q6C8H2    196   LOC1_YARLI 60S ribosomal subunit assembly/exp...1472e-20     89.7     46     57GO:0005730; C:nucleolus; IEA:UniProtKB-SubCell.
GO:0051028; P:mRNA transport; IEA:UniProtKB-KW.::GO:0042254; P:ribosome biogenesis; IEA:UniProtKB-KW.
12Q1E403    195   LOC1_COCIM 60S ribosomal subunit assembly/exp...1310.00000000000007     70.9     40     63GO:0005730; C:nucleolus; IEA:UniProtKB-SubCell.
GO:0051028; P:mRNA transport; IEA:UniProtKB-KW.::GO:0042254; P:ribosome biogenesis; IEA:UniProtKB-KW.
13A6RF09    207   LOC1_AJECN 60S ribosomal subunit assembly/exp...1040.000000000002     66.2     41     65GO:0005730; C:nucleolus; IEA:UniProtKB-SubCell.
GO:0051028; P:mRNA transport; IEA:UniProtKB-KW.::GO:0042254; P:ribosome biogenesis; IEA:UniProtKB-KW.
14Q5AYS4    188   LOC1_EMENI 60S ribosomal subunit assembly/exp...1330.000000000005     65.1     38     59GO:0005730; C:nucleolus; IEA:UniProtKB-SubCell.
GO:0051028; P:mRNA transport; IEA:UniProtKB-KW.::GO:0042254; P:ribosome biogenesis; IEA:UniProtKB-KW.
15A4RA36    199   LOC1_MAGO7 60S ribosomal subunit assembly/exp...1230.00000000001     63.9     41     61GO:0005730; C:nucleolus; IEA:UniProtKB-SubCell.
GO:0051028; P:mRNA transport; IEA:UniProtKB-KW.::GO:0042254; P:ribosome biogenesis; IEA:UniProtKB-KW.
16A1DLV0    190   LOC1_NEOFI 60S ribosomal subunit assembly/exp...1390.00000000009     61.6     40     60GO:0005730; C:nucleolus; IEA:UniProtKB-SubCell.
GO:0051028; P:mRNA transport; IEA:UniProtKB-KW.::GO:0042254; P:ribosome biogenesis; IEA:UniProtKB-KW.
17Q4WDG1    190   LOC1_ASPFU 60S ribosomal subunit assembly/exp...1390.0000000001     61.2     40     59GO:0005730; C:nucleolus; IEA:UniProtKB-SubCell.
GO:0051028; P:mRNA transport; IEA:UniProtKB-KW.::GO:0042254; P:ribosome biogenesis; IEA:UniProtKB-KW.
18Q2U9C6    190   LOC1_ASPOR 60S ribosomal subunit assembly/exp...1470.0000000002     60.5     39     61GO:0005730; C:nucleolus; IEA:UniProtKB-SubCell.
GO:0051028; P:mRNA transport; IEA:UniProtKB-KW.::GO:0042254; P:ribosome biogenesis; IEA:UniProtKB-KW.
19Q0V2R4    198   LOC1_PHANO 60S ribosomal subunit assembly/exp...970.0000000003     60.5     40     63GO:0005730; C:nucleolus; IEA:UniProtKB-SubCell.
GO:0051028; P:mRNA transport; IEA:UniProtKB-KW.::GO:0042254; P:ribosome biogenesis; IEA:UniProtKB-KW.
20A2R4J9    189   LOC1_ASPNC 60S ribosomal subunit assembly/exp...1460.0000000005     59.3     36     58GO:0005730; C:nucleolus; IEA:UniProtKB-SubCell.
GO:0051028; P:mRNA transport; IEA:UniProtKB-KW.::GO:0042254; P:ribosome biogenesis; IEA:UniProtKB-KW.
21A7E564    200   LOC1_SCLS1 60S ribosomal subunit assembly/exp...960.000000002     57.8     41     64GO:0005730; C:nucleolus; IEA:UniProtKB-SubCell.
GO:0051028; P:mRNA transport; IEA:UniProtKB-KW.::GO:0042254; P:ribosome biogenesis; IEA:UniProtKB-KW.
22Q9HEG2    209   LOC1_NEUCR 60S ribosomal subunit assembly/exp...960.000000002     58.2     43     63GO:0005730; C:nucleolus; IEA:UniProtKB-SubCell.
GO:0051028; P:mRNA transport; IEA:UniProtKB-KW.::GO:0042254; P:ribosome biogenesis; IEA:UniProtKB-KW.
23A6RJP7    200   LOC1_BOTFB 60S ribosomal subunit assembly/exp...960.000000002     57.8     42     60GO:0005730; C:nucleolus; IEA:UniProtKB-SubCell.
GO:0051028; P:mRNA transport; IEA:UniProtKB-KW.::GO:0042254; P:ribosome biogenesis; IEA:UniProtKB-KW.
24A1CM73    190   LOC1_ASPCL 60S ribosomal subunit assembly/exp...1680.000000006     56.6     35     55GO:0005730; C:nucleolus; IEA:UniProtKB-SubCell.
GO:0051028; P:mRNA transport; IEA:UniProtKB-KW.::GO:0042254; P:ribosome biogenesis; IEA:UniProtKB-KW.
25Q0CH56    188   LOC1_ASPTN 60S ribosomal subunit assembly/exp...1030.00000005     53.9     44     60GO:0005730; C:nucleolus; IEA:UniProtKB-SubCell.
GO:0051028; P:mRNA transport; IEA:UniProtKB-KW.::GO:0042254; P:ribosome biogenesis; IEA:UniProtKB-KW.
26Q2KXY7    1034   IF2_BORA1 Translation initiation factor IF-2 ...800.53     34.7     33     50GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0005525; F:GTP binding; IEA:UniProtKB-KW.::GO:0003924; F:GTPase activity; IEA:InterPro.::GO:0003743; F:translation initiation factor activity; IEA:UniProtKB-KW.
27Q0UJJ7    1202   NST1_PHANO Stress response protein NST1 OS=(G...611.3     33.5     31     62GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0006950; P:response to stress; IEA:UniProtKB-KW.
28O42991    197   RL16B_SCHPO 60S ribosomal protein L16-B OS=Sc...801.6     32.7     30     51GO:0022625; C:cytosolic large ribosomal subunit; ISS:PomBase.
GO:0003735; F:structural constituent of ribosome; ISS:PomBase.
GO:0002181; P:cytoplasmic translation; NAS:PomBase.
29Q8WXH0    6885   SYNE2_HUMAN Nesprin-2 OS=Homo sapiens (Human)...752.9     32.7     29     53GO:0005856; C:cytoskeleton; IEA:UniProtKB-SubCell.::GO:0031527; C:filopodium membrane; IDA:UniProtKB.::GO:0005925; C:focal adhesion; IDA:UniProtKB.::GO:0016021; C:integral to membrane; IEA:UniProtKB-KW.::GO:0031258; C:lamellipodium membrane; IDA:UniProtKB.::GO:0044429; C:mitochondrial part; IDA:UniProtKB.::GO:0005640; C:nuclear outer membrane; IEA:UniProtKB-SubCell.::GO:0005654; C:nucleoplasm; IEA:UniProtKB-SubCell.::GO:0033017; C:sarcoplasmic reticulum membrane; IEA:UniProtKB-SubCell.::GO:0034993; C:SUN-KASH complex; IDA:UniProtKB.::GO:0030018; C:Z disc; IDA:UniProtKB.
GO:0003779; F:actin binding; ISS:UniProtKB.::GO:0005515; F:protein binding; IPI:UniProtKB.
GO:0051642; P:centrosome localization; IMP:UniProtKB.::GO:0090286; P:cytoskeletal anchoring at nuclear membrane; IDA:UniProtKB.::GO:0031022; P:nuclear migration along microfilament; ISS:UniProtKB.::GO:0030335; P:positive regulation of cell migration; ISS:UniProtKB.
30Q8LPG9    668   IQD14_ARATH Protein IQ-DOMAIN 14 OS=Arabidops...473.8     32     34     57GO:0005886; C:plasma membrane; IDA:TAIR.
31O42848    197   RL16A_SCHPO 60S ribosomal protein L16-A OS=Sc...793.9     31.6     30     49GO:0022625; C:cytosolic large ribosomal subunit; ISS:PomBase.::GO:0005730; C:nucleolus; IDA:PomBase.
GO:0003735; F:structural constituent of ribosome; ISS:PomBase.
GO:0002181; P:cytoplasmic translation; NAS:PomBase.
records
Previous ‹‹ ›› Next Total records: 34 1 - 30
Elimate unknown annotation:
Filter for keyword on hit description:
Select upper E value:
Select lower bit score:
Select lower %idenity value:
Select lower %positive value:
Taxonomic division:
Lower limit on hit length:
Lower limit on alignment length::