Fungal Genome Collection
University of Nebraska Lincoln
School of Biological Sciences and Center for Plant Science Innovation
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UniProt_SwissProt BLAST: Single locus
Species:
Saccharomyces cerevisiae S288C
Locus:
YFL036W
Length:
1351
Number of sequences:
5887
Description:
YFL036W RPO41 SGDID:S000001858, Chr VI from 58782-62837, Genome Release 64-1-1, Verified ORF, "Mitochondrial RNA polymerase; single subunit enzyme similar to those of T3 and T7 bacteriophages; requires a specificity subunit encoded by MTF1 for promoter recognition"
rec.SubjectHit LengthDescriptionAlign.LenE valueBit score% ident.  % pos.GO associations
1P13433    1351   RPOM_YEAST DNA-directed RNA polymerase, mitoc...13510     2786     100     100GO:0034245; C:mitochondrial DNA-directed RNA polymerase complex; IDA:SGD.::GO:0042645; C:mitochondrial nucleoid; IDA:SGD.
GO:0003677; F:DNA binding; IEA:InterPro.::GO:0003899; F:DNA-directed RNA polymerase activity; IDA:SGD.
GO:0000002; P:mitochondrial genome maintenance; IMP:SGD.::GO:0006390; P:transcription from mitochondrial promoter; IDA:SGD.
2O13993    1154   RPOM_SCHPO DNA-directed RNA polymerase, mitoc...8880     758     44     62GO:0005829; C:cytosol; IDA:PomBase.::GO:0005759; C:mitochondrial matrix; ISS:PomBase.
GO:0003899; F:DNA-directed RNA polymerase activity; ISS:PomBase.::GO:0001044; F:mitochondrial RNA polymerase regulatory region sequence-specific DNA binding; IDA:PomBase.
GO:0000002; P:mitochondrial genome maintenance; ISS:PomBase.::GO:0006390; P:transcription from mitochondrial promoter; ISS:PomBase.
3P38671    1423   RPOM_NEUCR DNA-directed RNA polymerase, mitoc...410.002     47     49     66GO:0005739; C:mitochondrion; IEA:UniProtKB-SubCell.
GO:0003677; F:DNA binding; IEA:InterPro.::GO:0003899; F:DNA-directed RNA polymerase activity; IEA:UniProtKB-KW.
4Q9LFV6    1011   RPOT2_ARATH DNA-directed RNA polymerase 2, ch...8232e-169     539     39     56GO:0009507; C:chloroplast; TAS:TAIR.::GO:0005739; C:mitochondrion; TAS:TAIR.::GO:0042651; C:thylakoid membrane; TAS:TAIR.
GO:0003677; F:DNA binding; IEA:InterPro.::GO:0003899; F:DNA-directed RNA polymerase activity; IEA:UniProtKB-KW.
5Q8L6J3    1021   RPO2B_TOBAC DNA-directed RNA polymerase 2B, c...8067e-168     535     38     56GO:0009507; C:chloroplast; IEA:UniProtKB-SubCell.::GO:0005739; C:mitochondrion; IEA:UniProtKB-SubCell.
GO:0003677; F:DNA binding; IEA:InterPro.::GO:0003899; F:DNA-directed RNA polymerase activity; IEA:UniProtKB-KW.
6Q8VWF8    1020   RPOT2_NICSY DNA-directed RNA polymerase 2, ch...8061e-166     532     38     55GO:0009507; C:chloroplast; IEA:UniProtKB-SubCell.::GO:0005739; C:mitochondrion; IDA:UniProtKB.
GO:0003677; F:DNA binding; IEA:InterPro.::GO:0003899; F:DNA-directed RNA polymerase activity; IEA:UniProtKB-KW.
7O24600    993   RPOT3_ARATH DNA-directed RNA polymerase 3, ch...8512e-166     531     38     55GO:0009507; C:chloroplast; IEA:UniProtKB-SubCell.::GO:0005739; C:mitochondrion; IDA:TAIR.
GO:0003677; F:DNA binding; IEA:InterPro.::GO:0003899; F:DNA-directed RNA polymerase activity; IEA:UniProtKB-KW.::GO:0005515; F:protein binding; IPI:TAIR.
8P92969    976   RPOT1_ARATH DNA-directed RNA polymerase 1, mi...7852e-160     514     37     55GO:0005739; C:mitochondrion; IEA:UniProtKB-SubCell.
GO:0003677; F:DNA binding; IEA:InterPro.::GO:0003899; F:DNA-directed RNA polymerase activity; IEA:UniProtKB-KW.
GO:0009793; P:embryo development ending in seed dormancy; IMP:TAIR.::GO:0048481; P:ovule development; IMP:TAIR.::GO:0009860; P:pollen tube growth; IMP:TAIR.
9Q8L6J5    1002   RPO1B_TOBAC DNA-directed RNA polymerase 1B, m...7887e-157     506     38     56GO:0005739; C:mitochondrion; IEA:UniProtKB-SubCell.
GO:0003677; F:DNA binding; IEA:InterPro.::GO:0003899; F:DNA-directed RNA polymerase activity; IEA:UniProtKB-KW.
10P69242    977   RPOT3_NICSY DNA-directed RNA polymerase 3, ch...8434e-156     503     36     53GO:0009507; C:chloroplast; IEA:UniProtKB-SubCell.
GO:0003677; F:DNA binding; IEA:InterPro.::GO:0003899; F:DNA-directed RNA polymerase activity; IEA:UniProtKB-KW.
11P69243    977   RPO3A_TOBAC DNA-directed RNA polymerase 3A, c...8434e-156     503     36     53GO:0009507; C:chloroplast; IEA:UniProtKB-SubCell.
GO:0003677; F:DNA binding; IEA:InterPro.::GO:0003899; F:DNA-directed RNA polymerase activity; IEA:UniProtKB-KW.
12Q93Y94    1002   RPOT1_NICSY DNA-directed RNA polymerase 1, mi...7902e-155     501     38     56GO:0005739; C:mitochondrion; IDA:UniProtKB.
GO:0003677; F:DNA binding; IEA:InterPro.::GO:0003899; F:DNA-directed RNA polymerase activity; IEA:UniProtKB-KW.
13Q8L6J1    977   RPO3B_TOBAC DNA-directed RNA polymerase 3B, c...8441e-153     496     36     53GO:0009507; C:chloroplast; IEA:UniProtKB-SubCell.
GO:0003677; F:DNA binding; IEA:InterPro.::GO:0003899; F:DNA-directed RNA polymerase activity; IEA:UniProtKB-KW.
14O00411    1230   RPOM_HUMAN DNA-directed RNA polymerase, mitoc...6554e-148     488     41     57GO:0042645; C:mitochondrial nucleoid; IDA:BHF-UCL.
GO:0003677; F:DNA binding; IEA:InterPro.::GO:0003899; F:DNA-directed RNA polymerase activity; IDA:UniProtKB.::GO:0005515; F:protein binding; IPI:UniProtKB.
GO:0006391; P:transcription initiation from mitochondrial promoter; TAS:Reactome.
15Q8BKF1    1207   RPOM_MOUSE DNA-directed RNA polymerase, mitoc...6622e-143     475     42     56
GO:0003677; F:DNA binding; IEA:InterPro.::GO:0003899; F:DNA-directed RNA polymerase activity; IEA:UniProtKB-KW.
16Q8L6J2    332   RPO2A_TOBAC DNA-directed RNA polymerase 2A OS...3254e-83     280     45     62
GO:0003677; F:DNA binding; IEA:InterPro.::GO:0003899; F:DNA-directed RNA polymerase activity; IEA:UniProtKB-KW.
17P07659    884   RPOL_BPT3 DNA-directed RNA polymerase OS=Ente...7862e-75     273     30     47
GO:0003677; F:DNA binding; IEA:InterPro.::GO:0003899; F:DNA-directed RNA polymerase activity; IEA:UniProtKB-KW.
18P00573    883   RPOL_BPT7 DNA-directed RNA polymerase OS=Ente...8879e-72     263     28     45
GO:0003677; F:DNA binding; IEA:InterPro.::GO:0003899; F:DNA-directed RNA polymerase activity; IEA:UniProtKB-KW.
19P18147    906   RPOL_BPK11 DNA-directed RNA polymerase OS=Ent...7574e-71     261     29     46
GO:0003677; F:DNA binding; IEA:InterPro.::GO:0003899; F:DNA-directed RNA polymerase activity; IEA:UniProtKB-KW.
20P06221    874   RPOL_BPSP6 DNA-directed RNA polymerase OS=Ent...8185e-53     205     24     43
GO:0003677; F:DNA binding; IEA:InterPro.::GO:0003899; F:DNA-directed RNA polymerase activity; IEA:UniProtKB-KW.
21P33540    896   RPOP_NEUCS Probable DNA-directed RNA polymera...6216e-41     167     26     46GO:0005739; C:mitochondrion; IEA:UniProtKB-SubCell.
GO:0003677; F:DNA binding; IEA:InterPro.::GO:0003899; F:DNA-directed RNA polymerase activity; IEA:UniProtKB-KW.
22P33539    1102   RPOP_AGABT Probable DNA-directed RNA polymera...6033e-36     153     25     47GO:0005739; C:mitochondrion; IEA:UniProtKB-SubCell.
GO:0003677; F:DNA binding; IEA:InterPro.::GO:0003899; F:DNA-directed RNA polymerase activity; IEA:UniProtKB-KW.
23P33541    811   RPOP_NEUIN Probable DNA-directed RNA polymera...6027e-36     151     24     43GO:0005739; C:mitochondrion; IEA:UniProtKB-SubCell.
GO:0003677; F:DNA binding; IEA:InterPro.::GO:0003899; F:DNA-directed RNA polymerase activity; IEA:UniProtKB-KW.
24Q8L6J4    155   RPO1A_TOBAC DNA-directed RNA polymerase 1A OS...1242e-35     138     48     70
GO:0003677; F:DNA binding; IEA:InterPro.::GO:0003899; F:DNA-directed RNA polymerase activity; IEA:UniProtKB-KW.
25P22372    936   RPOP_CLAPU Probable DNA-directed RNA polymera...7993e-35     149     24     44GO:0005739; C:mitochondrion; IEA:UniProtKB-SubCell.
GO:0003677; F:DNA binding; IEA:InterPro.::GO:0003899; F:DNA-directed RNA polymerase activity; IEA:UniProtKB-KW.
26Q01521    948   RPOP_PODAS Probable DNA-directed RNA polymera...5961e-30     135     24     45GO:0005739; C:mitochondrion; IEA:UniProtKB-SubCell.
GO:0003677; F:DNA binding; IEA:InterPro.::GO:0003899; F:DNA-directed RNA polymerase activity; IEA:UniProtKB-KW.
27O03685    831   RPOP_GELSP Probable DNA-directed RNA polymera...6002e-30     133     24     44GO:0005739; C:mitochondrion; IEA:UniProtKB-SubCell.
GO:0003677; F:DNA binding; IEA:InterPro.::GO:0003899; F:DNA-directed RNA polymerase activity; IEA:UniProtKB-KW.
28P10581    1098   RPOP_MAIZE Probable DNA-directed RNA polymera...4550.0000008     57.8     22     40GO:0005739; C:mitochondrion; IEA:UniProtKB-SubCell.
GO:0003677; F:DNA binding; IEA:InterPro.::GO:0003899; F:DNA-directed RNA polymerase activity; IEA:UniProtKB-KW.
29Q7ZVK4    382   VPS36_DANRE Vacuolar protein-sorting-associat...1091.9     36.2     30     53GO:0005768; C:endosome; ISS:UniProtKB.
GO:0015031; P:protein transport; IEA:UniProtKB-KW.
30A5PK00    386   VPS36_BOVIN Vacuolar protein-sorting-associat...1093.1     35.4     29     51GO:0005770; C:late endosome; IEA:UniProtKB-SubCell.::GO:0016020; C:membrane; IEA:UniProtKB-SubCell.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0008289; F:lipid binding; IEA:UniProtKB-KW.
GO:0015031; P:protein transport; IEA:UniProtKB-KW.::GO:0006355; P:regulation of transcription, DNA-dependent; IEA:UniProtKB-KW.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW.
31Q86VN1    386   VPS36_HUMAN Vacuolar protein-sorting-associat...1093.5     35.4     29     51GO:0005829; C:cytosol; TAS:Reactome.::GO:0005770; C:late endosome; IEA:UniProtKB-SubCell.::GO:0016020; C:membrane; IEA:UniProtKB-SubCell.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0008289; F:lipid binding; IEA:UniProtKB-KW.
GO:0016044; P:cellular membrane organization; TAS:Reactome.::GO:0016197; P:endosome transport; TAS:Reactome.::GO:0015031; P:protein transport; IEA:UniProtKB-KW.::GO:0006355; P:regulation of transcription, DNA-dependent; IEA:UniProtKB-KW.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW.
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