Fungal Genome Collection
University of Nebraska Lincoln
School of Biological Sciences and Center for Plant Science Innovation
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UniProt_SwissProt BLAST: Single locus
Species:
Saccharomyces cerevisiae S288C
Locus:
YFL009W
Length:
779
Number of sequences:
5887
Description:
YFL009W CDC4 SGDID:S000001885, Chr VI from 116145-118484, Genome Release 64-1-1, Verified ORF, "F-box protein required for G1/S and G2/M transition, associates with Skp1p and Cdc53p to form a complex, SCFCdc4, which acts as ubiquitin-protein ligase directing ubiquitination of the phosphorylated CDK inhibitor Sic1p"
rec.SubjectHit LengthDescriptionAlign.LenE valueBit score% ident.  % pos.GO associations
271Q3MHE2    521   PRP4_BOVIN U4/U6 small nuclear ribonucleoprot...1932.7     35     19     38GO:0016607; C:nuclear speck; IEA:UniProtKB-SubCell.::GO:0005681; C:spliceosomal complex; IEA:UniProtKB-KW.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.
272Q8TC44    478   POC1B_HUMAN POC1 centriolar protein homolog B...2990.000000005     62.8     23     38GO:0005814; C:centriole; IDA:UniProtKB.::GO:0005932; C:microtubule basal body; IDA:UniProtKB.
GO:0042384; P:cilium assembly; IMP:UniProtKB.
273Q58D20    485   NLE1_BOVIN Notchless protein homolog 1 OS=Bos...1810.032     41.2     23     39GO:0005730; C:nucleolus; IEA:UniProtKB-SubCell.
274Q9UKT8    454   FBXW2_HUMAN F-box/WD repeat-containing protei...930.036     41.2     30     45
GO:0004842; F:ubiquitin-protein ligase activity; TAS:ProtInc.
GO:0006508; P:proteolysis; TAS:ProtInc.
275Q60584    422   FBXW2_MOUSE F-box/WD repeat-containing protei...930.21     38.5     29     43GO:0005737; C:cytoplasm; IDA:MGI.
276Q5JTN6    314   WDR38_HUMAN WD repeat-containing protein 38 O...2800.00000009     58.2     23     40
277P83774    317   GBLP_CANAL Guanine nucleotide-binding protein...2250.000000000002     72.4     28     44GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0005625; C:soluble fraction; IDA:CGD.
GO:0007155; P:cell adhesion; IMP:CGD.::GO:0030448; P:hyphal growth; IMP:CGD.::GO:0001403; P:invasive growth in response to glucose limitation; IMP:CGD.::GO:0009405; P:pathogenesis; IMP:CGD.
278Q5SUS0    1030   FBW10_MOUSE F-box/WD repeat-containing protei...2260.000005     53.9     23     40
279Q9D994    303   WDR38_MOUSE WD repeat-containing protein 38 O...1830.085     39.7     24     43
280O55029    905   COPB2_MOUSE Coatomer subunit beta' OS=Mus mus...1820.042     41.2     23     45
GO:0005488; F:binding; IEA:InterPro.::GO:0005198; F:structural molecule activity; IEA:InterPro.
GO:0006886; P:intracellular protein transport; IEA:InterPro.
281P35605    906   COPB2_BOVIN Coatomer subunit beta' OS=Bos tau...1820.043     41.2     23     45GO:0030126; C:COPI vesicle coat; IDA:UniProtKB.
GO:0005080; F:protein kinase C binding; ISS:AgBase.::GO:0005198; F:structural molecule activity; IEA:InterPro.
GO:0006891; P:intra-Golgi vesicle-mediated transport; TAS:UniProtKB.::GO:0006886; P:intracellular protein transport; IEA:InterPro.::GO:0006890; P:retrograde vesicle-mediated transport, Golgi to ER; TAS:UniProtKB.
282P35606    906   COPB2_HUMAN Coatomer subunit beta' OS=Homo sa...1820.042     41.2     23     45GO:0015629; C:actin cytoskeleton; IDA:HPA.::GO:0030126; C:COPI vesicle coat; IDA:UniProtKB.::GO:0005829; C:cytosol; TAS:Reactome.
GO:0005488; F:binding; IEA:InterPro.::GO:0005198; F:structural molecule activity; IEA:InterPro.
GO:0048205; P:COPI coating of Golgi vesicle; TAS:Reactome.::GO:0006891; P:intra-Golgi vesicle-mediated transport; IDA:UniProtKB.::GO:0006886; P:intracellular protein transport; IEA:InterPro.::GO:0006890; P:retrograde vesicle-mediated transport, Golgi to ER; TAS:UniProtKB.
283Q9NSI6    2320   BRWD1_HUMAN Bromodomain and WD repeat-contain...1640.000001     55.8     24     39GO:0005737; C:cytoplasm; IDA:HPA.::GO:0005730; C:nucleolus; IDA:HPA.
GO:0007010; P:cytoskeleton organization; IMP:UniProtKB.::GO:0008360; P:regulation of cell shape; IMP:UniProtKB.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW.
284B2RZ17    454   FBXW2_RAT F-box/WD repeat-containing protein ...930.18     38.9     29     43
285Q4R4I8    906   COPB2_MACFA Coatomer subunit beta' OS=Macaca ...1820.047     40.8     23     45GO:0030663; C:COPI coated vesicle membrane; IEA:UniProtKB-SubCell.::GO:0030117; C:membrane coat; IEA:InterPro.
GO:0005488; F:binding; IEA:InterPro.::GO:0005198; F:structural molecule activity; IEA:InterPro.
GO:0006886; P:intracellular protein transport; IEA:InterPro.::GO:0016192; P:vesicle-mediated transport; IEA:UniProtKB-KW.
286A1CUD6    467   LIS11_ASPCL Nuclear distribution protein nudF...1450.006     43.5     25     42GO:0005737; C:cytoplasm; IEA:UniProtKB-KW.::GO:0005874; C:microtubule; IEA:UniProtKB-KW.::GO:0000922; C:spindle pole; IEA:UniProtKB-SubCell.
GO:0051301; P:cell division; IEA:UniProtKB-KW.::GO:0007067; P:mitosis; IEA:UniProtKB-KW.::GO:0006810; P:transport; IEA:UniProtKB-KW.
287Q5R664    906   COPB2_PONAB Coatomer subunit beta' OS=Pongo a...1820.044     41.2     23     45GO:0030663; C:COPI coated vesicle membrane; IEA:UniProtKB-SubCell.::GO:0030117; C:membrane coat; IEA:InterPro.
GO:0005488; F:binding; IEA:InterPro.::GO:0005198; F:structural molecule activity; IEA:InterPro.
GO:0006886; P:intracellular protein transport; IEA:InterPro.::GO:0016192; P:vesicle-mediated transport; IEA:UniProtKB-KW.
288C5PFX0    471   LIS1_COCP7 Nuclear distribution protein PAC1 ...1450.0002     48.5     26     46GO:0005737; C:cytoplasm; IEA:UniProtKB-KW.::GO:0005874; C:microtubule; IEA:UniProtKB-KW.::GO:0000922; C:spindle pole; IEA:UniProtKB-SubCell.
GO:0051301; P:cell division; IEA:UniProtKB-KW.::GO:0007067; P:mitosis; IEA:UniProtKB-KW.::GO:0006810; P:transport; IEA:UniProtKB-KW.
289Q7ZVF0    416   POC1A_DANRE POC1 centriolar protein homolog A...2570.002     45.1     23     42
290Q96WV5    1207   COPA_SCHPO Putative coatomer subunit alpha OS...2400.0000001     58.9     23     42GO:0030126; C:COPI vesicle coat; ISS:PomBase.
GO:0005198; F:structural molecule activity; IEA:InterPro.
GO:0006888; P:ER to Golgi vesicle-mediated transport; ISS:PomBase.::GO:0006886; P:intracellular protein transport; IC:PomBase.::GO:0006890; P:retrograde vesicle-mediated transport, Golgi to ER; ISS:PomBase.
291Q17BB0    427   WDR12_AEDAE Ribosome biogenesis protein WDR12...1300.33     37.7     26     48GO:0005654; C:nucleoplasm; IEA:UniProtKB-SubCell.::GO:0070545; C:PeBoW complex; ISS:UniProtKB.
GO:0000463; P:maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA); ISS:UniProtKB.
292Q9DAW6    521   PRP4_MOUSE U4/U6 small nuclear ribonucleoprot...1931.8     35.8     19     38GO:0016607; C:nuclear speck; IEA:UniProtKB-SubCell.::GO:0005681; C:spliceosomal complex; IEA:UniProtKB-KW.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.
293P25635    923   PWP2_YEAST Periodic tryptophan protein 2 OS=S...2032.5     35.4     21     39GO:0005737; C:cytoplasm; IDA:SGD.::GO:0034388; C:Pwp2p-containing subcomplex of 90S preribosome; IDA:SGD.::GO:0032040; C:small-subunit processome; IDA:SGD.
GO:0005515; F:protein binding; IPI:IntAct.::GO:0030515; F:snoRNA binding; IPI:SGD.
GO:0000910; P:cytokinesis; IMP:SGD.::GO:0000480; P:endonucleolytic cleavage in 5'-ETS of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA); IMP:SGD.::GO:0000447; P:endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA); IMP:SGD.::GO:0000472; P:endonucleolytic cleavage to generate mature 5'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA); IMP:SGD.::GO:0030010; P:establishment of cell polarity; IMP:SGD.
294Q25189    317   GBLP_HYDVU Guanine nucleotide-binding protein...1830.018     41.6     21     42
295O42248    317   GBLP_DANRE Guanine nucleotide-binding protein...2500.0000000006     65.1     26     42GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0001525; P:angiogenesis; IMP:ZFIN.::GO:0030178; P:negative regulation of Wnt receptor signaling pathway; IMP:UniProtKB.::GO:2000543; P:positive regulation of gastrulation; IMP:UniProtKB.::GO:0051302; P:regulation of cell division; IMP:UniProtKB.::GO:2000114; P:regulation of establishment of cell polarity; IMP:UniProtKB.::GO:0032880; P:regulation of protein localization; IMP:UniProtKB.
296Q5VQ78    907   COB21_ORYSJ Coatomer subunit beta'-1 OS=Oryza...2380.00000001     62.4     23     39GO:0030663; C:COPI coated vesicle membrane; IEA:UniProtKB-SubCell.::GO:0030117; C:membrane coat; IEA:InterPro.
GO:0005488; F:binding; IEA:InterPro.::GO:0005198; F:structural molecule activity; IEA:InterPro.
GO:0006886; P:intracellular protein transport; IEA:InterPro.::GO:0016192; P:vesicle-mediated transport; IEA:UniProtKB-KW.
297P53622    1201   COPA_YEAST Coatomer subunit alpha OS=Saccharo...3750.00000001     62.4     19     35GO:0030126; C:COPI vesicle coat; IMP:SGD.
GO:0005198; F:structural molecule activity; IEA:InterPro.::GO:0043130; F:ubiquitin binding; IDA:SGD.
GO:0006888; P:ER to Golgi vesicle-mediated transport; IMP:SGD.::GO:0006886; P:intracellular protein transport; IEA:InterPro.::GO:0006890; P:retrograde vesicle-mediated transport, Golgi to ER; IMP:SGD.
298Q229Z6    634   POC1_TETTS POC1 centriolar protein homolog OS...3050.0000001     58.9     21     40GO:0005929; C:cilium; IEA:UniProtKB-KW.::GO:0005932; C:microtubule basal body; IDA:UniProtKB.
GO:0030030; P:cell projection organization; IEA:UniProtKB-KW.::GO:0051297; P:centrosome organization; IMP:UniProtKB.
299Q9C827    926   COB22_ARATH Coatomer subunit beta'-2 OS=Arabi...2340.00004     50.8     21     39GO:0030663; C:COPI coated vesicle membrane; IEA:UniProtKB-SubCell.::GO:0005829; C:cytosol; IDA:TAIR.::GO:0030117; C:membrane coat; IEA:InterPro.
GO:0005488; F:binding; IEA:InterPro.::GO:0005198; F:structural molecule activity; IEA:InterPro.
GO:0006886; P:intracellular protein transport; IEA:InterPro.::GO:0016192; P:vesicle-mediated transport; IEA:UniProtKB-KW.
300Q9CAA0    920   COB21_ARATH Coatomer subunit beta'-1 OS=Arabi...2340.0001     49.7     21     39GO:0030663; C:COPI coated vesicle membrane; IEA:UniProtKB-SubCell.::GO:0005829; C:cytosol; IDA:TAIR.::GO:0030117; C:membrane coat; IEA:InterPro.
GO:0005488; F:binding; IEA:InterPro.::GO:0005198; F:structural molecule activity; IEA:InterPro.
GO:0006886; P:intracellular protein transport; IEA:InterPro.::GO:0016192; P:vesicle-mediated transport; IEA:UniProtKB-KW.
301Q93134    316   GBLP_BIOGL Guanine nucleotide-binding protein...2320.000000001     63.9     25     44
records
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