Fungal Genome Collection
University of Nebraska Lincoln
School of Biological Sciences and Center for Plant Science Innovation
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UniProt_SwissProt BLAST: Single locus
Species:
Saccharomyces cerevisiae S288C
Locus:
YER165W
Length:
577
Number of sequences:
5887
Description:
YER165W PAB1 SGDID:S000000967, Chr V from 510373-512106, Genome Release 64-1-1, Verified ORF, "Poly(A) binding protein, part of the 3'-end RNA-processing complex, mediates interactions between the 5' cap structure and the 3' mRNA poly(A) tail, involved in control of poly(A) tail length, interacts with translation factor eIF-4G"
rec.SubjectHit LengthDescriptionAlign.LenE valueBit score% ident.  % pos.GO associations
961Q9VSR3    704   ORB2_DROME Probable RNA-binding protein orb2 ...622.5     34.7     27     52GO:0043679; C:axon terminus; IDA:FlyBase.::GO:0044297; C:cell body; IDA:FlyBase.::GO:0044292; C:dendrite terminus; IDA:FlyBase.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; NAS:UniProtKB.
GO:0008356; P:asymmetric cell division; IMP:FlyBase.::GO:0007616; P:long-term memory; IDA:FlyBase.::GO:0008049; P:male courtship behavior; IMP:FlyBase.
962Q28ZX3    225   PABP2_DROPS Polyadenylate-binding protein 2 O...833.1     33.9     27     49GO:0005737; C:cytoplasm; ISS:UniProtKB.::GO:0005634; C:nucleus; ISS:UniProtKB.
GO:0042802; F:identical protein binding; ISS:UniProtKB.::GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0008143; F:poly(A) RNA binding; ISS:UniProtKB.
GO:0006378; P:mRNA polyadenylation; ISS:UniProtKB.
963C8Z7W7    291   RRT5_YEAS8 Regulator of rDNA transcription pr...972.9     34.3     26     41
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006355; P:regulation of transcription, DNA-dependent; IEA:UniProtKB-KW.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW.
964P43607    289   RRT5_YEAST Regulator of rDNA transcription pr...973     33.9     26     41
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006355; P:regulation of transcription, DNA-dependent; IEA:UniProtKB-KW.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW.
965A7A270    289   RRT5_YEAS7 Regulator of rDNA transcription pr...973     33.9     26     41
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006355; P:regulation of transcription, DNA-dependent; IEA:UniProtKB-KW.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW.
966B5VI57    289   RRT5_YEAS6 Regulator of rDNA transcription pr...973     33.9     26     41
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006355; P:regulation of transcription, DNA-dependent; IEA:UniProtKB-KW.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW.
967C7GYD5    289   RRT5_YEAS2 Regulator of rDNA transcription pr...973     33.9     26     41
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006355; P:regulation of transcription, DNA-dependent; IEA:UniProtKB-KW.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW.
968B3LUP1    289   RRT5_YEAS1 Regulator of rDNA transcription pr...973     33.9     26     41
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006355; P:regulation of transcription, DNA-dependent; IEA:UniProtKB-KW.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW.
969B6IRP6    1397   RPOB_RHOCS DNA-directed RNA polymerase subuni...883     34.7     24     48
GO:0003677; F:DNA binding; IEA:InterPro.::GO:0003899; F:DNA-directed RNA polymerase activity; IEA:UniProtKB-KW.::GO:0032549; F:ribonucleoside binding; IEA:InterPro.
970Q17QD3    355   RFOX1_BOVIN RNA binding protein fox-1 homolog...893.1     34.3     27     42GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.
971Q5NVH8    552   CPSF6_PONAB Cleavage and polyadenylation spec...823.3     34.3     30     44GO:0005849; C:mRNA cleavage factor complex; ISS:UniProtKB.
GO:0003729; F:mRNA binding; ISS:UniProtKB.::GO:0000166; F:nucleotide binding; IEA:InterPro.
GO:0006378; P:mRNA polyadenylation; ISS:UniProtKB.
972Q6DCB7    371   DND1_XENLA Dead end protein homolog 1 OS=Xeno...1553.4     34.3     22     39GO:0005737; C:cytoplasm; ISS:UniProtKB.::GO:0005634; C:nucleus; ISS:UniProtKB.
GO:0017091; F:AU-rich element binding; ISS:UniProtKB.::GO:0000166; F:nucleotide binding; IEA:InterPro.
GO:0007275; P:multicellular organismal development; IEA:UniProtKB-KW.::GO:0060965; P:negative regulation of gene silencing by miRNA; ISS:UniProtKB.
973Q1DPD9    288   EIF3G_COCIM Eukaryotic translation initiation...793.5     33.9     23     53GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003743; F:translation initiation factor activity; IEA:UniProtKB-KW.
974Q7Q6D6    249   MED8_ANOGA Mediator of RNA polymerase II tran...623.5     33.5     35     44GO:0016592; C:mediator complex; IEA:InterPro.
GO:0001104; F:RNA polymerase II transcription cofactor activity; IEA:InterPro.
975Q3UHX0    1147   NOL8_MOUSE Nucleolar protein 8 OS=Mus musculu...753.6     34.3     33     48GO:0005730; C:nucleolus; ISS:UniProtKB.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006364; P:rRNA processing; ISS:UniProtKB.
976A5DNX9    274   EIF3G_PICGU Eukaryotic translation initiation...283.8     33.5     50     71GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003743; F:translation initiation factor activity; IEA:UniProtKB-KW.
977Q6NVF9    551   CPSF6_MOUSE Cleavage and polyadenylation spec...823.8     34.3     30     44GO:0005849; C:mRNA cleavage factor complex; ISS:UniProtKB.
GO:0003729; F:mRNA binding; ISS:UniProtKB.::GO:0000166; F:nucleotide binding; IEA:InterPro.
GO:0006378; P:mRNA polyadenylation; ISS:UniProtKB.
978Q9ZR39    555   U2A2A_NICPL Splicing factor U2af large subuni...773.8     34.3     30     47GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.
979Q5R7H2    248   SRSF1_PONAB Serine/arginine-rich splicing fac...733.9     33.5     27     47GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0016607; C:nuclear speck; IEA:UniProtKB-SubCell.::GO:0005681; C:spliceosomal complex; IEA:UniProtKB-KW.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; ISS:UniProtKB.
GO:0000395; P:nuclear mRNA 5'-splice site recognition; ISS:UniProtKB.
980Q3YLA6    248   SRSF1_PIG Serine/arginine-rich splicing facto...733.9     33.5     27     47GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0016607; C:nuclear speck; IEA:UniProtKB-SubCell.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; ISS:UniProtKB.
GO:0000395; P:nuclear mRNA 5'-splice site recognition; ISS:UniProtKB.
981Q6PDM2    248   SRSF1_MOUSE Serine/arginine-rich splicing fac...733.9     33.5     27     47GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0016607; C:nuclear speck; IEA:UniProtKB-SubCell.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; ISS:UniProtKB.::GO:0050733; F:RS domain binding; IPI:MGI.
GO:0001701; P:in utero embryonic development; IMP:MGI.::GO:0000395; P:nuclear mRNA 5'-splice site recognition; ISS:UniProtKB.
982Q07955    248   SRSF1_HUMAN Serine/arginine-rich splicing fac...733.9     33.5     27     47GO:0071013; C:catalytic step 2 spliceosome; IDA:UniProtKB.::GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0016607; C:nuclear speck; IEA:UniProtKB-SubCell.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IDA:UniProtKB.
GO:0031124; P:mRNA 3'-end processing; TAS:Reactome.::GO:0006406; P:mRNA export from nucleus; TAS:Reactome.::GO:0000395; P:nuclear mRNA 5'-splice site recognition; IDA:UniProtKB.::GO:0006369; P:termination of RNA polymerase II transcription; TAS:Reactome.
983Q0VCY7    248   SRSF1_BOVIN Serine/arginine-rich splicing fac...733.9     33.5     27     47GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0016607; C:nuclear speck; IEA:UniProtKB-SubCell.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; ISS:UniProtKB.
GO:0000395; P:nuclear mRNA 5'-splice site recognition; ISS:UniProtKB.
984A5DR43    738   EIF3B_PICGU Eukaryotic translation initiation...713.9     34.3     32     49GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003743; F:translation initiation factor activity; IEA:UniProtKB-KW.
985Q54QW1    670   EIF3B_DICDI Eukaryotic translation initiation...413.9     34.3     39     54GO:0005852; C:eukaryotic translation initiation factor 3 complex; ISS:UniProtKB.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003743; F:translation initiation factor activity; ISS:UniProtKB.
GO:0006446; P:regulation of translational initiation; ISS:UniProtKB.
986B4J6D5    690   EIF3B_DROGR Eukaryotic translation initiation...475.5     33.5     32     57GO:0005852; C:eukaryotic translation initiation factor 3 complex; ISS:UniProtKB.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003743; F:translation initiation factor activity; ISS:UniProtKB.
GO:0006446; P:regulation of translational initiation; ISS:UniProtKB.
987Q16630    551   CPSF6_HUMAN Cleavage and polyadenylation spec...824     33.9     30     44GO:0005849; C:mRNA cleavage factor complex; IDA:UniProtKB.::GO:0042382; C:paraspeckles; IDA:UniProtKB.::GO:0030529; C:ribonucleoprotein complex; IDA:MGI.
GO:0003729; F:mRNA binding; IDA:UniProtKB.::GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0005515; F:protein binding; IPI:UniProtKB.
GO:0006378; P:mRNA polyadenylation; IMP:UniProtKB.::GO:0051262; P:protein tetramerization; IDA:UniProtKB.
988Q0P5D2    551   CPSF6_BOVIN Cleavage and polyadenylation spec...824     33.9     30     44GO:0005849; C:mRNA cleavage factor complex; ISS:UniProtKB.
GO:0003729; F:mRNA binding; ISS:UniProtKB.::GO:0000166; F:nucleotide binding; IEA:InterPro.
GO:0006378; P:mRNA polyadenylation; ISS:UniProtKB.
989P32385    249   RNP1_YEAST Ribonucleoprotein 1 OS=Saccharomyc...834.2     33.5     24     48GO:0005737; C:cytoplasm; IDA:SGD.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0042254; P:ribosome biogenesis; IMP:SGD.
990Q5ZML3    257   SRSF1_CHICK Serine/arginine-rich splicing fac...734.2     33.5     27     47GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.
991Q5ZL34    551   CPSF6_CHICK Cleavage and polyadenylation spec...824.7     33.9     30     44GO:0005849; C:mRNA cleavage factor complex; ISS:UniProtKB.
GO:0003729; F:mRNA binding; ISS:UniProtKB.::GO:0000166; F:nucleotide binding; IEA:InterPro.
GO:0006378; P:mRNA polyadenylation; ISS:UniProtKB.
records
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