Fungal Genome Collection
University of Nebraska Lincoln
School of Biological Sciences and Center for Plant Science Innovation
Home About FGC Use Cases Species List

UniProt_SwissProt BLAST: Single locus
Species:
Saccharomyces cerevisiae S288C
Locus:
YER165W
Length:
577
Number of sequences:
5887
Description:
YER165W PAB1 SGDID:S000000967, Chr V from 510373-512106, Genome Release 64-1-1, Verified ORF, "Poly(A) binding protein, part of the 3'-end RNA-processing complex, mediates interactions between the 5' cap structure and the 3' mRNA poly(A) tail, involved in control of poly(A) tail length, interacts with translation factor eIF-4G"
rec.SubjectHit LengthDescriptionAlign.LenE valueBit score% ident.  % pos.GO associations
841P97379    482   G3BP2_MOUSE Ras GTPase-activating protein-bin...591.9     35     31     51
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0051028; P:mRNA transport; IEA:UniProtKB-KW.
842Q0E940    690   EIF3B_DROME Eukaryotic translation initiation...520.16     38.5     33     60GO:0005852; C:eukaryotic translation initiation factor 3 complex; ISS:UniProtKB.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0005515; F:protein binding; IPI:UniProtKB.::GO:0003743; F:translation initiation factor activity; ISS:UniProtKB.
GO:0006446; P:regulation of translational initiation; ISS:UniProtKB.
843Q5R9L3    482   G3BP2_PONAB Ras GTPase-activating protein-bin...591.9     35     31     51
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0051028; P:mRNA transport; IEA:UniProtKB-KW.
844Q9UN86    482   G3BP2_HUMAN Ras GTPase-activating protein-bin...591.9     35     31     51GO:0005829; C:cytosol; TAS:Reactome.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0030159; F:receptor signaling complex scaffold activity; NAS:UniProtKB.::GO:0003723; F:RNA binding; NAS:UniProtKB.
GO:0007253; P:cytoplasmic sequestering of NF-kappaB; NAS:UniProtKB.::GO:0051028; P:mRNA transport; IEA:UniProtKB-KW.::GO:0007265; P:Ras protein signal transduction; NAS:UniProtKB.::GO:0051056; P:regulation of small GTPase mediated signal transduction; TAS:Reactome.
845Q32LC7    465   G3BP1_BOVIN Ras GTPase-activating protein-bin...567.2     33.1     29     52GO:0005829; C:cytosol; IEA:UniProtKB-SubCell.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.::GO:0005886; C:plasma membrane; IEA:UniProtKB-SubCell.
GO:0005524; F:ATP binding; IEA:UniProtKB-KW.::GO:0003677; F:DNA binding; IEA:UniProtKB-KW.::GO:0004519; F:endonuclease activity; IEA:UniProtKB-KW.::GO:0004386; F:helicase activity; IEA:UniProtKB-KW.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006810; P:transport; IEA:UniProtKB-KW.
846Q2QKB4    543   U2A2B_WHEAT Splicing factor U2af large subuni...1530.16     38.5     27     39GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.
847A6ZZ25    274   EIF3G_YEAS7 Eukaryotic translation initiation...600.16     38.1     35     55GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003743; F:translation initiation factor activity; IEA:UniProtKB-KW.
848Q5RB68    556   IF2B2_PONAB Insulin-like growth factor 2 mRNA...1610.54     37     23     43GO:0005737; C:cytoplasm; ISS:UniProtKB.::GO:0044430; C:cytoskeletal part; ISS:UniProtKB.::GO:0005634; C:nucleus; ISS:UniProtKB.
GO:0003730; F:mRNA 3'-UTR binding; ISS:UniProtKB.::GO:0048027; F:mRNA 5'-UTR binding; ISS:UniProtKB.::GO:0000166; F:nucleotide binding; IEA:InterPro.
GO:0006417; P:regulation of translation; IEA:UniProtKB-KW.
849O81127    187   RZP21_ARATH Serine/arginine-rich splicing fac...624.3     33.1     24     55GO:0016607; C:nuclear speck; IDA:TAIR.
GO:0003676; F:nucleic acid binding; IEA:InterPro.::GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0005515; F:protein binding; IPI:IntAct.::GO:0008270; F:zinc ion binding; IEA:InterPro.
GO:0000398; P:nuclear mRNA splicing, via spliceosome; TAS:TAIR.
850Q04067    274   EIF3G_YEAST Eukaryotic translation initiation...600.16     38.1     35     55GO:0005852; C:eukaryotic translation initiation factor 3 complex; IDA:SGD.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0005515; F:protein binding; IPI:IntAct.::GO:0003743; F:translation initiation factor activity; IDA:SGD.
GO:0002188; P:translation reinitiation; IMP:SGD.
851Q2QZL4    548   U2A2B_ORYSJ Splicing factor U2af large subuni...2720.17     38.5     24     38GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.
852Q8BTF8    293   RALYL_MOUSE RNA-binding Raly-like protein OS=...818.3     32.7     26     47
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
853O57526    593   IF23B_XENLA Insulin-like growth factor 2 mRNA...1270.17     38.5     26     46GO:0005783; C:endoplasmic reticulum; IEA:UniProtKB-SubCell.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0003677; F:DNA binding; IEA:UniProtKB-KW.::GO:0003730; F:mRNA 3'-UTR binding; ISS:UniProtKB.::GO:0000166; F:nucleotide binding; IEA:InterPro.
GO:0051028; P:mRNA transport; IEA:UniProtKB-KW.::GO:0007275; P:multicellular organismal development; IEA:UniProtKB-KW.::GO:0006355; P:regulation of transcription, DNA-dependent; IEA:UniProtKB-KW.::GO:0006417; P:regulation of translation; IEA:UniProtKB-KW.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW.
854Q86SE5    291   RALYL_HUMAN RNA-binding Raly-like protein OS=...817.3     32.7     26     47
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
855Q28E41    309   RNPS1_XENTR RNA-binding protein with serine-r...769.7     32.3     30     46GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0016607; C:nuclear speck; IEA:UniProtKB-SubCell.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.
856Q6NYA0    245   SRS1B_DANRE Serine/arginine-rich splicing fac...734.4     33.5     27     47GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.
857Q69KL9    185   RZ21A_ORYSJ Serine/arginine-rich splicing fac...581.2     34.7     36     52
GO:0003676; F:nucleic acid binding; IEA:InterPro.::GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0008270; F:zinc ion binding; IEA:InterPro.
858O42254    576   IF2B1_CHICK Insulin-like growth factor 2 mRNA...1620.2     38.1     25     45GO:0070937; C:CRD-mediated mRNA stability complex; ISS:UniProtKB.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0003730; F:mRNA 3'-UTR binding; ISS:UniProtKB.::GO:0000166; F:nucleotide binding; IEA:InterPro.
859Q3T127    220   U2AF4_BOVIN Splicing factor U2AF 26 kDa subun...780.21     37.4     29     49GO:0016607; C:nuclear speck; IEA:UniProtKB-SubCell.::GO:0005681; C:spliceosomal complex; IEA:UniProtKB-KW.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.::GO:0008270; F:zinc ion binding; IEA:InterPro.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.
860Q9Y6M1    599   IF2B2_HUMAN Insulin-like growth factor 2 mRNA...1610.67     36.6     23     43GO:0044430; C:cytoskeletal part; IDA:BHF-UCL.::GO:0005829; C:cytosol; TAS:Reactome.::GO:0005634; C:nucleus; IDA:BHF-UCL.
GO:0003730; F:mRNA 3'-UTR binding; IDA:UniProtKB.::GO:0048027; F:mRNA 5'-UTR binding; IDA:BHF-UCL.::GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0005515; F:protein binding; IPI:UniProtKB.::GO:0045182; F:translation regulator activity; ISS:BHF-UCL.
GO:0009653; P:anatomical structure morphogenesis; TAS:ProtInc.::GO:0017148; P:negative regulation of translation; ISS:BHF-UCL.::GO:0042035; P:regulation of cytokine biosynthetic process; IC:BHF-UCL.
861Q6BTS9    462   NOP12_DEBHA Nucleolar protein 12 OS=0083 / IG...780.21     38.1     35     51GO:0005730; C:nucleolus; IEA:UniProtKB-SubCell.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006364; P:rRNA processing; IEA:UniProtKB-KW.
862Q9LNV5    481   C3H4_ARATH Zinc finger CCCH domain-containing...1044.5     33.9     23     47GO:0005634; C:nucleus; IDA:TAIR.
GO:0003677; F:DNA binding; IEA:UniProtKB-KW.::GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.::GO:0008270; F:zinc ion binding; IEA:InterPro.
GO:0042742; P:defense response to bacterium; IGI:TAIR.
863Q8CGX0    577   IF2B1_RAT Insulin-like growth factor 2 mRNA-b...1640.56     37     22     42GO:0070937; C:CRD-mediated mRNA stability complex; ISS:UniProtKB.::GO:0010494; C:cytoplasmic stress granule; ISS:UniProtKB.::GO:0043197; C:dendritic spine; IEA:UniProtKB-SubCell.::GO:0030027; C:lamellipodium; IEA:UniProtKB-SubCell.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0003730; F:mRNA 3'-UTR binding; ISS:UniProtKB.::GO:0000166; F:nucleotide binding; IEA:InterPro.
GO:0010610; P:regulation of mRNA stability involved in response to stress; ISS:UniProtKB.::GO:0006403; P:RNA localization; IMP:RGD.
864Q9NZI8    577   IF2B1_HUMAN Insulin-like growth factor 2 mRNA...1640.54     37     22     42GO:0070937; C:CRD-mediated mRNA stability complex; IDA:UniProtKB.::GO:0010494; C:cytoplasmic stress granule; IDA:UniProtKB.::GO:0005829; C:cytosol; TAS:Reactome.::GO:0043197; C:dendritic spine; IEA:UniProtKB-SubCell.::GO:0030027; C:lamellipodium; IEA:UniProtKB-SubCell.::GO:0005634; C:nucleus; IDA:HPA.::GO:0005886; C:plasma membrane; IDA:HPA.
GO:0003730; F:mRNA 3'-UTR binding; IDA:UniProtKB.::GO:0048027; F:mRNA 5'-UTR binding; IDA:BHF-UCL.::GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0005515; F:protein binding; IPI:UniProtKB.::GO:0045182; F:translation regulator activity; IDA:BHF-UCL.
GO:0070934; P:CRD-mediated mRNA stabilization; IDA:UniProtKB.::GO:0017148; P:negative regulation of translation; IDA:BHF-UCL.::GO:0042035; P:regulation of cytokine biosynthetic process; IC:BHF-UCL.::GO:0010610; P:regulation of mRNA stability involved in response to stress; IMP:UniProtKB.
865Q4WCH5    538   NOP12_ASPFU Nucleolar protein 12 OS=A1100) (A...620.22     38.1     32     53GO:0005730; C:nucleolus; IEA:UniProtKB-SubCell.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006364; P:rRNA processing; IEA:UniProtKB-KW.
866Q9PW80    582   IF2B3_DANRE Insulin-like growth factor 2 mRNA...1409.3     32.7     21     44GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0003730; F:mRNA 3'-UTR binding; ISS:UniProtKB.::GO:0000166; F:nucleotide binding; IEA:InterPro.
GO:0006417; P:regulation of translation; IEA:UniProtKB-KW.
867O88477    577   IF2B1_MOUSE Insulin-like growth factor 2 mRNA...1640.52     37     22     42GO:0070937; C:CRD-mediated mRNA stability complex; ISS:UniProtKB.::GO:0010494; C:cytoplasmic stress granule; ISS:UniProtKB.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0003730; F:mRNA 3'-UTR binding; ISS:UniProtKB.::GO:0000166; F:nucleotide binding; IEA:InterPro.
GO:0010610; P:regulation of mRNA stability involved in response to stress; ISS:UniProtKB.
868Q2KIR1    282   SNRPA_BOVIN U1 small nuclear ribonucleoprotei...660.25     37.4     36     52GO:0005681; C:spliceosomal complex; IEA:UniProtKB-KW.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0017069; F:snRNA binding; IEA:InterPro.
GO:0000398; P:nuclear mRNA splicing, via spliceosome; IEA:InterPro.
869B3ME25    686   EIF3B_DROAN Eukaryotic translation initiation...630.85     36.2     32     51GO:0005852; C:eukaryotic translation initiation factor 3 complex; ISS:UniProtKB.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003743; F:translation initiation factor activity; ISS:UniProtKB.
GO:0006446; P:regulation of translational initiation; ISS:UniProtKB.
870Q6TY21    218   EPA2B_XENLA Embryonic polyadenylate-binding p...740.27     37     27     53GO:0005737; C:cytoplasm; IDA:UniProtKB.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0008143; F:poly(A) RNA binding; IDA:UniProtKB.
871Q06AA4    282   SNRPA_PIG U1 small nuclear ribonucleoprotein ...660.27     37.4     36     52GO:0005681; C:spliceosomal complex; IEA:UniProtKB-KW.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0017069; F:snRNA binding; IEA:InterPro.
GO:0000398; P:nuclear mRNA splicing, via spliceosome; IEA:InterPro.
records
Previous ‹‹ ›› Next Total records: 999 841 - 870
Elimate unknown annotation:
Filter for keyword on hit description:
Select upper E value:
Select lower bit score:
Select lower %idenity value:
Select lower %positive value:
Taxonomic division:
Lower limit on hit length:
Lower limit on alignment length::