Fungal Genome Collection
University of Nebraska Lincoln
School of Biological Sciences and Center for Plant Science Innovation
Home About FGC Use Cases Species List

UniProt_SwissProt BLAST: Single locus
Species:
Saccharomyces cerevisiae S288C
Locus:
YER165W
Length:
577
Number of sequences:
5887
Description:
YER165W PAB1 SGDID:S000000967, Chr V from 510373-512106, Genome Release 64-1-1, Verified ORF, "Poly(A) binding protein, part of the 3'-end RNA-processing complex, mediates interactions between the 5' cap structure and the 3' mRNA poly(A) tail, involved in control of poly(A) tail length, interacts with translation factor eIF-4G"
rec.SubjectHit LengthDescriptionAlign.LenE valueBit score% ident.  % pos.GO associations
721P25299    296   RNA15_YEAST mRNA 3'-end-processing protein RN...624.8     33.5     26     56GO:0005849; C:mRNA cleavage factor complex; IPI:SGD.
GO:0003729; F:mRNA binding; IDA:SGD.::GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0046982; F:protein heterodimerization activity; IPI:SGD.
GO:0006379; P:mRNA cleavage; IDA:SGD.::GO:0006378; P:mRNA polyadenylation; IDA:SGD.
722Q9FVQ1    557   NUCL1_ARATH Nucleolin 1 OS=Arabidopsis thalia...944.3     33.9     29     51GO:0005730; C:nucleolus; IDA:TAIR.
GO:0003676; F:nucleic acid binding; IEA:InterPro.::GO:0000166; F:nucleotide binding; IEA:InterPro.
GO:0010588; P:cotyledon vascular tissue pattern formation; IMP:TAIR.::GO:0000478; P:endonucleolytic cleavage involved in rRNA processing; IMP:TAIR.::GO:0048366; P:leaf development; IMP:TAIR.::GO:0010305; P:leaf vascular tissue pattern formation; IMP:TAIR.::GO:0080056; P:petal vascular tissue pattern formation; IMP:TAIR.::GO:0048364; P:root development; IMP:TAIR.::GO:0080057; P:sepal vascular tissue pattern formation; IMP:TAIR.
723Q76LC6    230   RBM24_DANRE RNA-binding protein 24 OS=Danio r...640.57     36.2     33     48GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0003730; F:mRNA 3'-UTR binding; ISS:UniProtKB.::GO:0000166; F:nucleotide binding; IEA:InterPro.
GO:0003228; P:atrial cardiac muscle tissue development; IMP:ZFIN.::GO:0030154; P:cell differentiation; IEA:UniProtKB-KW.::GO:0001947; P:heart looping; IMP:ZFIN.::GO:0043488; P:regulation of mRNA stability; ISS:UniProtKB.::GO:0010830; P:regulation of myotube differentiation; ISS:UniProtKB.
724Q55FQ0    459   RU17_DICDI U1 small nuclear ribonucleoprotein...850.009     42.4     28     53GO:0005681; C:spliceosomal complex; ISS:UniProtKB.::GO:0005685; C:U1 snRNP; ISS:dictyBase.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; ISS:UniProtKB.
GO:0000398; P:nuclear mRNA splicing, via spliceosome; ISS:UniProtKB.::GO:0043484; P:regulation of RNA splicing; ISS:UniProtKB.
725Q95ZE9    281   NELFE_DROVI Negative elongation factor E OS=D...696.9     32.7     29     55GO:0005694; C:chromosome; IEA:UniProtKB-SubCell.::GO:0017053; C:transcriptional repressor complex; ISS:UniProtKB.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; ISS:UniProtKB.
GO:0007070; P:negative regulation of transcription from RNA polymerase II promoter during mitosis; ISS:UniProtKB.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW.
726Q7SYS2    278   MK67I_XENLA MKI67 FHA domain-interacting nucl...621.8     34.7     29     48GO:0005730; C:nucleolus; IEA:UniProtKB-SubCell.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0010923; P:negative regulation of phosphatase activity; ISS:UniProtKB.
727Q59ZV5    279   EIF3G_CANAL Eukaryotic translation initiation...661.7     34.7     32     52GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003743; F:translation initiation factor activity; IEA:UniProtKB-KW.
728P53830    285   CUS2_YEAST Cold sensitive U2 snRNA suppressor...1130.011     41.6     28     47GO:0005681; C:spliceosomal complex; IEA:UniProtKB-KW.::GO:0005686; C:U2 snRNP; TAS:SGD.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IMP:SGD.
GO:0000398; P:nuclear mRNA splicing, via spliceosome; IPI:SGD.
729Q10277    533   MSA1_SCHPO Multicopy suppressor of sporulatio...3990.86     36.2     19     38GO:0005829; C:cytosol; IDA:PomBase.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0031138; P:negative regulation of conjugation with cellular fusion; IMP:PomBase.::GO:0006355; P:regulation of transcription, DNA-dependent; IEA:UniProtKB-KW.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW.
730O15042    1029   SR140_HUMAN U2 snRNP-associated SURP motif-co...1260.017     42     26     41GO:0005634; C:nucleus; IDA:UniProtKB.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0005515; F:protein binding; IPI:UniProtKB.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006396; P:RNA processing; IEA:InterPro.
731Q5R7X2    1028   SR140_PONAB U2 snRNP-associated SURP motif-co...860.044     40.4     28     50GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006396; P:RNA processing; IEA:InterPro.
732Q6NV83    1029   SR140_MOUSE U2 snRNP-associated SURP motif-co...1260.019     41.6     26     41GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006396; P:RNA processing; IEA:InterPro.
733A6NDY0    278   EPAB2_HUMAN Embryonic polyadenylate-binding p...870.013     41.2     28     52GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
734Q6PBM8    188   RBM18_DANRE Probable RNA-binding protein 18 O...760.52     35.8     32     47
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
735B3NMI5    690   EIF3B_DROER Eukaryotic translation initiation...490.04     40.4     39     63GO:0005852; C:eukaryotic translation initiation factor 3 complex; ISS:UniProtKB.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003743; F:translation initiation factor activity; ISS:UniProtKB.
GO:0006446; P:regulation of translational initiation; ISS:UniProtKB.
736B4P5F7    690   EIF3B_DROYA Eukaryotic translation initiation...490.04     40.4     39     63GO:0005852; C:eukaryotic translation initiation factor 3 complex; ISS:UniProtKB.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003743; F:translation initiation factor activity; ISS:UniProtKB.
GO:0006446; P:regulation of translational initiation; ISS:UniProtKB.
737Q4R627    581   LARP7_MACFA La-related protein 7 OS=Macaca fa...653.4     34.3     32     49GO:0005654; C:nucleoplasm; IEA:UniProtKB-SubCell.::GO:0030529; C:ribonucleoprotein complex; IEA:InterPro.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006396; P:RNA processing; IEA:InterPro.
738O74978    276   YQL5_SCHPO Uncharacterized RNA-binding protei...1070.015     41.2     24     48GO:0005730; C:nucleolus; IDA:PomBase.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0042254; P:ribosome biogenesis; ISS:PomBase.
739Q13242    221   SRSF9_HUMAN Serine/arginine-rich splicing fac...1780.015     40.8     24     39GO:0005654; C:nucleoplasm; TAS:Reactome.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0031124; P:mRNA 3'-end processing; TAS:Reactome.::GO:0006406; P:mRNA export from nucleus; TAS:Reactome.::GO:0006376; P:mRNA splice site selection; TAS:ProtInc.::GO:0048025; P:negative regulation of nuclear mRNA splicing, via spliceosome; IDA:UniProtKB.::GO:0006369; P:termination of RNA polymerase II transcription; TAS:Reactome.
740Q7ZXB8    295   PAB2B_XENLA Polyadenylate-binding protein 2-B...850.015     41.2     27     54GO:0005737; C:cytoplasm; ISS:UniProtKB.::GO:0005634; C:nucleus; ISS:UniProtKB.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0008143; F:poly(A) RNA binding; ISS:UniProtKB.
GO:0006378; P:mRNA polyadenylation; ISS:UniProtKB.
741A7TFW4    274   EIF3G_VANPO Eukaryotic translation initiation...790.8     35.8     28     47GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003743; F:translation initiation factor activity; IEA:UniProtKB-KW.
742Q8WZK0    695   YHRA_SCHPO Uncharacterized RNA-binding protei...610.016     42     34     51GO:0005829; C:cytosol; IDA:PomBase.::GO:0005681; C:spliceosomal complex; NAS:PomBase.::GO:0005685; C:U1 snRNP; IDA:PomBase.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; ISS:PomBase.
GO:0000395; P:nuclear mRNA 5'-splice site recognition; IC:PomBase.
743Q4G0J3    582   LARP7_HUMAN La-related protein 7 OS=Homo sapi...654.1     33.9     32     49GO:0005737; C:cytoplasm; IDA:HPA.::GO:0005654; C:nucleoplasm; IEA:UniProtKB-SubCell.::GO:0030529; C:ribonucleoprotein complex; IEA:InterPro.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006396; P:RNA processing; IEA:InterPro.
744Q2R0Q1    574   U2A2A_ORYSJ Splicing factor U2af large subuni...1840.017     41.6     27     41GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.
745Q96IZ5    413   RBM41_HUMAN RNA-binding protein 41 OS=Homo sa...1971     35.8     23     42
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
746O94621    352   YBKC_SCHPO Uncharacterized RNA-binding protei...2450.017     41.2     19     40GO:0005829; C:cytosol; IDA:PomBase.::GO:0005685; C:U1 snRNP; IDA:PomBase.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0000395; P:nuclear mRNA 5'-splice site recognition; IC:PomBase.
747Q9UUE4    432   PPIL4_SCHPO Peptidyl-prolyl cis-trans isomera...760.11     38.9     25     54GO:0000790; C:nuclear chromatin; IDA:PomBase.::GO:0005816; C:spindle pole body; IDA:PomBase.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003755; F:peptidyl-prolyl cis-trans isomerase activity; IEA:UniProtKB-KW.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0070816; P:phosphorylation of RNA polymerase II C-terminal domain; IMP:PomBase.::GO:0006457; P:protein folding; TAS:PomBase.::GO:0008360; P:regulation of cell shape; IMP:PomBase.::GO:0006368; P:transcription elongation from RNA polymerase II promoter; IMP:PomBase.
748B5E081    690   EIF3B_DROPS Eukaryotic translation initiation...631.1     35.8     32     52GO:0005852; C:eukaryotic translation initiation factor 3 complex; ISS:UniProtKB.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003743; F:translation initiation factor activity; ISS:UniProtKB.
GO:0006446; P:regulation of translational initiation; ISS:UniProtKB.
749B4GAY7    690   EIF3B_DROPE Eukaryotic translation initiation...631.1     35.8     32     52GO:0005852; C:eukaryotic translation initiation factor 3 complex; ISS:UniProtKB.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003743; F:translation initiation factor activity; ISS:UniProtKB.
GO:0006446; P:regulation of translational initiation; ISS:UniProtKB.
750Q5SP50    218   ZCRB1_DANRE Zinc finger CCHC-type and RNA-bin...730.02     40.4     27     53GO:0005681; C:spliceosomal complex; IEA:UniProtKB-KW.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.::GO:0008270; F:zinc ion binding; IEA:InterPro.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.
751Q8ITY4    138   PM14_CAEEL Pre-mRNA branch site p14-like prot...990.51     35     25     47GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0000003; P:reproduction; IMP:WormBase.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.
records
Previous ‹‹ ›› Next Total records: 999 721 - 750
Elimate unknown annotation:
Filter for keyword on hit description:
Select upper E value:
Select lower bit score:
Select lower %idenity value:
Select lower %positive value:
Taxonomic division:
Lower limit on hit length:
Lower limit on alignment length::