Fungal Genome Collection
University of Nebraska Lincoln
School of Biological Sciences and Center for Plant Science Innovation
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UniProt_SwissProt BLAST: Single locus
Species:
Saccharomyces cerevisiae S288C
Locus:
YER165W
Length:
577
Number of sequences:
5887
Description:
YER165W PAB1 SGDID:S000000967, Chr V from 510373-512106, Genome Release 64-1-1, Verified ORF, "Poly(A) binding protein, part of the 3'-end RNA-processing complex, mediates interactions between the 5' cap structure and the 3' mRNA poly(A) tail, involved in control of poly(A) tail length, interacts with translation factor eIF-4G"
rec.SubjectHit LengthDescriptionAlign.LenE valueBit score% ident.  % pos.GO associations
181P19684    324   ROC5_NICSY 33 kDa ribonucleoprotein, chloropl...840.22     37.7     27     49GO:0009507; C:chloroplast; IEA:UniProtKB-SubCell.::GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.
182B3NGA1    582   SHEP_DROER Protein alan shepard OS=Drosophila...1580.000000003     63.5     24     46
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0009629; P:response to gravity; ISS:UniProtKB.
183B4HUE4    579   SHEP_DROSE Protein alan shepard OS=Drosophila...1580.000000003     63.5     24     46
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0009629; P:response to gravity; ISS:UniProtKB.
184Q6FXP4    861   MRD1_CANGA Multiple RNA-binding domain-contai...830.071     39.7     30     57GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.::GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006364; P:rRNA processing; IEA:UniProtKB-KW.
185B4PIS2    582   SHEP_DROYA Protein alan shepard OS=Drosophila...1580.000000003     63.5     24     46
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0009629; P:response to gravity; ISS:UniProtKB.
186Q8MSV2    578   SHEP_DROME Protein alan shepard OS=Drosophila...1580.000000003     63.2     24     46
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0009629; P:response to gravity; IMP:UniProtKB.
187Q99020    285   ROAA_MOUSE Heterogeneous nuclear ribonucleopr...760.05     39.7     24     49GO:0005737; C:cytoplasm; IDA:HGNC.::GO:0005634; C:nucleus; IDA:HGNC.::GO:0030529; C:ribonucleoprotein complex; ISS:UniProtKB.
GO:0003677; F:DNA binding; IEA:UniProtKB-KW.::GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0005515; F:protein binding; IPI:HGNC.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0001837; P:epithelial to mesenchymal transition; IDA:HGNC.::GO:0045893; P:positive regulation of transcription, DNA-dependent; IDA:HGNC.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW.
188B4LFQ9    595   SHEP_DROVI Protein alan shepard OS=Drosophila...1580.000000003     63.2     23     46
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0009629; P:response to gravity; ISS:UniProtKB.
189O13620    833   MRD1_SCHPO Multiple RNA-binding domain-contai...2036.5     33.5     24     37GO:0030686; C:90S preribosome; ISS:PomBase.::GO:0005730; C:nucleolus; IDA:PomBase.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; ISS:PomBase.
GO:0006364; P:rRNA processing; ISS:PomBase.::GO:0034462; P:small-subunit processome assembly; ISS:PomBase.
190Q9SVM8    158   GRP2_ARATH Glycine-rich RNA-binding protein 2...830.000004     50.8     34     49GO:0005739; C:mitochondrion; IDA:TAIR.
GO:0005524; F:ATP binding; IDA:TAIR.::GO:0005507; F:copper ion binding; IDA:TAIR.::GO:0003690; F:double-stranded DNA binding; IDA:TAIR.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.::GO:0003697; F:single-stranded DNA binding; IDA:TAIR.
GO:0009409; P:response to cold; IMP:TAIR.::GO:0006970; P:response to osmotic stress; IMP:TAIR.::GO:0009845; P:seed germination; IMP:TAIR.
191B4IX08    609   SHEP_DROGR Protein alan shepard OS=Drosophila...1580.000000004     62.8     23     46
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0009629; P:response to gravity; ISS:UniProtKB.
192O13845    603   RSD1_SCHPO RNA-binding protein rsd1 OS=Schizo...2000.0000000001     67.8     25     47GO:0005681; C:spliceosomal complex; ISS:PomBase.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0045292; P:nuclear mRNA cis splicing, via spliceosome; ISS:PomBase.
193Q9D0E1    729   HNRPM_MOUSE Heterogeneous nuclear ribonucleop...730.38     37.4     27     58
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
194Q6Z1C0    572   NUCL1_ORYSJ Nucleolin 1 OS=Oryza sativa subsp...810.001     45.4     31     60
GO:0003676; F:nucleic acid binding; IEA:InterPro.::GO:0000166; F:nucleotide binding; IEA:InterPro.
195Q8C854    591   MYEF2_MOUSE Myelin expression factor 2 OS=Mus...770.0004     47     36     60GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0003677; F:DNA binding; IEA:UniProtKB-KW.::GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW.
196B4MM23    581   SHEP_DROWI Protein alan shepard OS=Drosophila...1580.000000001     64.7     24     46
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0009629; P:response to gravity; ISS:UniProtKB.
197O74400    674   YOCE_SCHPO Uncharacterized RNA-binding protei...1850.0000000004     66.2     27     50GO:0005730; C:nucleolus; IDA:PomBase.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006364; P:rRNA processing; ISS:PomBase.
198Q9P2K5    600   MYEF2_HUMAN Myelin expression factor 2 OS=Hom...1961.5     35.4     23     38GO:0005794; C:Golgi apparatus; IDA:HPA.::GO:0005634; C:nucleus; IDA:UniProtKB.
GO:0003677; F:DNA binding; IEA:UniProtKB-KW.::GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0014902; P:myotube differentiation; IEP:UniProtKB.::GO:0030182; P:neuron differentiation; IEP:UniProtKB.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW.
199P52272    730   HNRPM_HUMAN Heterogeneous nuclear ribonucleop...710.46     37     28     59GO:0071013; C:catalytic step 2 spliceosome; IDA:UniProtKB.::GO:0005887; C:integral to plasma membrane; TAS:ProtInc.::GO:0016363; C:nuclear matrix; IDA:BHF-UCL.::GO:0042382; C:paraspeckles; IDA:BHF-UCL.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0019904; F:protein domain specific binding; IPI:UniProtKB.::GO:0003723; F:RNA binding; NAS:HGNC.
GO:0000380; P:alternative nuclear mRNA splicing, via spliceosome; IMP:BHF-UCL.
200Q99383    534   HRP1_YEAST Nuclear polyadenylated RNA-binding...720.00003     50.4     33     54GO:0010494; C:cytoplasmic stress granule; IDA:SGD.::GO:0005849; C:mRNA cleavage factor complex; IPI:SGD.
GO:0003729; F:mRNA binding; IDA:SGD.::GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0005515; F:protein binding; IPI:IntAct.
GO:0006379; P:mRNA cleavage; IDA:SGD.::GO:0006378; P:mRNA polyadenylation; IDA:SGD.::GO:0000184; P:nuclear-transcribed mRNA catabolic process, nonsense-mediated decay; IEA:UniProtKB-KW.
201B3M3R5    597   SHEP_DROAN Protein alan shepard OS=Drosophila...1830.0000000001     67.8     28     47
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0009629; P:response to gravity; ISS:UniProtKB.
202Q5R9H4    587   A1CF_PONAB APOBEC1 complementation factor OS=...771.4     35.4     30     49GO:0030895; C:apolipoprotein B mRNA editing enzyme complex; ISS:UniProtKB.::GO:0005783; C:endoplasmic reticulum; IEA:UniProtKB-SubCell.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003727; F:single-stranded RNA binding; ISS:UniProtKB.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0050821; P:protein stabilization; ISS:UniProtKB.
203Q9NQ94    594   A1CF_HUMAN APOBEC1 complementation factor OS=...771.5     35.4     30     49GO:0030895; C:apolipoprotein B mRNA editing enzyme complex; IDA:UniProtKB.::GO:0005783; C:endoplasmic reticulum; IEA:UniProtKB-SubCell.::GO:0005654; C:nucleoplasm; TAS:Reactome.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0005515; F:protein binding; IPI:UniProtKB.::GO:0003727; F:single-stranded RNA binding; IDA:UniProtKB.
GO:0016554; P:cytidine to uridine editing; TAS:Reactome.::GO:0016556; P:mRNA modification; TAS:Reactome.::GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0050821; P:protein stabilization; IDA:UniProtKB.
204P0CR16    769   MRD1_CRYNJ Multiple RNA-binding domain-contai...1110.00006     49.7     23     50GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.::GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006364; P:rRNA processing; IEA:UniProtKB-KW.
205P0CR17    769   MRD1_CRYNB Multiple RNA-binding domain-contai...1110.00006     49.7     23     50GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.::GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006364; P:rRNA processing; IEA:UniProtKB-KW.
206Q06106    887   MRD1_YEAST Multiple RNA-binding domain-contai...882.4     35     24     52GO:0030686; C:90S preribosome; IDA:SGD.::GO:0005730; C:nucleolus; IDA:SGD.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0000480; P:endonucleolytic cleavage in 5'-ETS of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA); IMP:SGD.::GO:0000447; P:endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA); IMP:SGD.::GO:0000472; P:endonucleolytic cleavage to generate mature 5'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA); IMP:SGD.::GO:0034462; P:small-subunit processome assembly; IMP:SGD.
207B4QRJ0    576   SHEP_DROSI Protein alan shepard OS=Drosophila...1830.000000001     64.7     27     45
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0009629; P:response to gravity; ISS:UniProtKB.
208Q04047    700   NONA_DROME Protein no-on-transient A OS=Droso...825.5     33.5     30     45GO:0071013; C:catalytic step 2 spliceosome; IDA:FlyBase.::GO:0071011; C:precatalytic spliceosome; IDA:FlyBase.
GO:0003729; F:mRNA binding; TAS:FlyBase.::GO:0000166; F:nucleotide binding; IEA:InterPro.
GO:0045433; P:male courtship behavior, veined wing generated song production; IMP:FlyBase.::GO:0000398; P:nuclear mRNA splicing, via spliceosome; IC:FlyBase.::GO:0042331; P:phototaxis; NAS:FlyBase.::GO:0007632; P:visual behavior; NAS:FlyBase.::GO:0007601; P:visual perception; IMP:FlyBase.
209Q99K48    473   NONO_MOUSE Non-POU domain-containing octamer-...1540.0000001     58.2     27     44
GO:0003677; F:DNA binding; IEA:UniProtKB-KW.::GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006310; P:DNA recombination; IEA:UniProtKB-KW.::GO:0006281; P:DNA repair; IEA:UniProtKB-KW.::GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0006355; P:regulation of transcription, DNA-dependent; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW.
210Q99181    213   HSH49_YEAST Protein HSH49 OS=Saccharomyces ce...1790.0000000006     62.8     29     46GO:0005686; C:U2 snRNP; IDA:SGD.::GO:0071004; C:U2-type prespliceosome; IDA:SGD.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0005515; F:protein binding; IPI:IntAct.::GO:0003723; F:RNA binding; IDA:SGD.
GO:0000398; P:nuclear mRNA splicing, via spliceosome; IMP:SGD.
211Q5FVM4    476   NONO_RAT Non-POU domain-containing octamer-bi...1540.0000001     57.8     27     44GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0003677; F:DNA binding; IEA:UniProtKB-KW.::GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0005515; F:protein binding; IPI:BHF-UCL.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006310; P:DNA recombination; IEA:UniProtKB-KW.::GO:0006281; P:DNA repair; IEA:UniProtKB-KW.::GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0006355; P:regulation of transcription, DNA-dependent; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW.
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