Fungal Genome Collection
University of Nebraska Lincoln
School of Biological Sciences and Center for Plant Science Innovation
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UniProt_SwissProt BLAST: Single locus
Species:
Saccharomyces cerevisiae S288C
Locus:
YER162C
Length:
754
Number of sequences:
5887
Description:
YER162C RAD4 SGDID:S000000964, Chr V from 502894-500630, Genome Release 64-1-1, reverse complement, Verified ORF, "Protein that recognizes and binds damaged DNA (with Rad23p) during nucleotide excision repair; subunit of Nuclear Excision Repair Factor 2 (NEF2); also involved, with Rad23p, in turnover of ubiquitylated proteins"
rec.SubjectHit LengthDescriptionAlign.LenE valueBit score% ident.  % pos.GO associations
1P14736    754   RAD4_YEAST DNA repair protein RAD4 OS=Sacchar...7540     1563     100     100GO:0005829; C:cytosol; IDA:SGD.::GO:0000111; C:nucleotide-excision repair factor 2 complex; IDA:SGD.
GO:0003684; F:damaged DNA binding; IDA:SGD.::GO:0005515; F:protein binding; IPI:IntAct.
GO:0006289; P:nucleotide-excision repair; IMP:SGD.::GO:0043161; P:proteasomal ubiquitin-dependent protein catabolic process; IMP:SGD.
2P87235    686   RHP42_SCHPO DNA repair protein rhp42 OS=Schiz...5747e-51     193     29     47GO:0005730; C:nucleolus; IDA:PomBase.::GO:0000109; C:nucleotide-excision repair complex; ISS:PomBase.
GO:0003684; F:damaged DNA binding; ISS:PomBase.
GO:0006298; P:mismatch repair; IGI:PomBase.::GO:0006289; P:nucleotide-excision repair; IGI:PomBase.
3Q10445    638   RHP41_SCHPO DNA repair protein rhp41 OS=Schiz...1660.0000000001     68.6     30     47GO:0000109; C:nucleotide-excision repair complex; ISS:PomBase.::GO:0005819; C:spindle; IDA:PomBase.
GO:0003684; F:damaged DNA binding; IEA:InterPro.
GO:0006298; P:mismatch repair; IGI:PomBase.::GO:0006289; P:nucleotide-excision repair; IGI:PomBase.
4P51612    930   XPC_MOUSE DNA repair protein complementing XP...3672e-28     125     28     45GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0071942; C:XPC complex; ISS:UniProtKB.
GO:0031573; P:intra-S DNA damage checkpoint; IGI:MGI.::GO:0010224; P:response to UV-B; IMP:MGI.
5Q24595    1293   XPC_DROME DNA repair protein complementing XP...3643e-28     125     27     47GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0003684; F:damaged DNA binding; IEA:InterPro.
GO:0006289; P:nucleotide-excision repair; IEA:InterPro.
6Q01831    940   XPC_HUMAN DNA repair protein complementing XP...3802e-24     113     27     45GO:0005737; C:cytoplasm; IDA:UniProtKB.::GO:0005654; C:nucleoplasm; TAS:Reactome.::GO:0071942; C:XPC complex; IDA:UniProtKB.
GO:0000405; F:bubble DNA binding; TAS:UniProtKB.::GO:0003684; F:damaged DNA binding; IDA:UniProtKB.::GO:0000404; F:loop DNA binding; TAS:UniProtKB.::GO:0005515; F:protein binding; IPI:IntAct.::GO:0003697; F:single-stranded DNA binding; IDA:UniProtKB.
GO:0000715; P:nucleotide-excision repair, DNA damage recognition; IDA:UniProtKB.::GO:0000718; P:nucleotide-excision repair, DNA damage removal; TAS:Reactome.
7Q06665    692   RAD34_YEAST DNA repair protein RAD34 OS=Sacch...2710.000004     53.9     23     42GO:0005634; C:nucleus; IDA:SGD.
GO:0003684; F:damaged DNA binding; IEA:InterPro.
GO:0006289; P:nucleotide-excision repair; IMP:SGD.
8Q6FRU8    348   PNG1_CANGA Peptide-N(4)-(N-acetyl-beta-glucos...1490.024     41.2     25     48GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0005634; C:nucleus; IEA:InterPro.
GO:0003684; F:damaged DNA binding; IEA:InterPro.::GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.::GO:0000224; F:peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase activity; IEA:EC.
GO:0006289; P:nucleotide-excision repair; IEA:InterPro.
9Q75D29    350   PNG1_ASHGO Peptide-N(4)-(N-acetyl-beta-glucos...1190.14     38.9     29     50GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0005634; C:nucleus; IEA:InterPro.
GO:0003684; F:damaged DNA binding; IEA:InterPro.::GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.::GO:0000224; F:peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase activity; IEA:EC.
GO:0006289; P:nucleotide-excision repair; IEA:InterPro.
10Q7F0R1    447   PNG1_ORYSJ Peptide-N(4)-(N-acetyl-beta-glucos...1321.6     35.8     25     42GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.::GO:0000224; F:peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase activity; IEA:EC.
11Q02890    363   PNG1_YEAST Peptide-N(4)-(N-acetyl-beta-glucos...1196.9     33.5     24     45GO:0005829; C:cytosol; IDA:SGD.::GO:0005739; C:mitochondrion; IDA:SGD.::GO:0005634; C:nucleus; IDA:SGD.
GO:0003684; F:damaged DNA binding; IEA:InterPro.::GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.::GO:0000224; F:peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase activity; IDA:SGD.
GO:0006515; P:misfolded or incompletely synthesized protein catabolic process; IMP:SGD.::GO:0006289; P:nucleotide-excision repair; IEA:InterPro.::GO:0006517; P:protein deglycosylation; IDA:SGD.
12Q71ZA3    273   FPG_LISMF Formamidopyrimidine-DNA glycosylase...2529.6     32.7     21     40
GO:0003684; F:damaged DNA binding; IEA:InterPro.::GO:0008534; F:oxidized purine base lesion DNA N-glycosylase activity; IEA:EC.::GO:0008270; F:zinc ion binding; IEA:InterPro.
GO:0006284; P:base-excision repair; IEA:InterPro.::GO:0006289; P:nucleotide-excision repair; IEA:InterPro.
records
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