Fungal Genome Collection
University of Nebraska Lincoln
School of Biological Sciences and Center for Plant Science Innovation
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UniProt_SwissProt BLAST: Single locus
Species:
Saccharomyces cerevisiae S288C
Locus:
YER146W
Length:
93
Number of sequences:
5887
Description:
YER146W LSM5 SGDID:S000000948, Chr V from 462585-462866, Genome Release 64-1-1, Verified ORF, "Lsm (Like Sm) protein; part of heteroheptameric complexes (Lsm2p-7p and either Lsm1p or 8p): cytoplasmic Lsm1p complex involved in mRNA decay; nuclear Lsm8p complex part of U6 snRNP and possibly involved in processing tRNA, snoRNA, and rRNA"
rec.SubjectHit LengthDescriptionAlign.LenE valueBit score% ident.  % pos.GO associations
91Q3SZF8    118   SMD2_BOVIN Small nuclear ribonucleoprotein Sm...450.51     31.2     33     62
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.
92Q9VI10    119   SMD2_DROME Probable small nuclear ribonucleop...470.52     31.2     34     62GO:0071013; C:catalytic step 2 spliceosome; IDA:FlyBase.::GO:0071011; C:precatalytic spliceosome; IDA:FlyBase.::GO:0030532; C:small nuclear ribonucleoprotein complex; ISS:UniProtKB.
GO:0007067; P:mitosis; IMP:FlyBase.::GO:0007052; P:mitotic spindle organization; IMP:FlyBase.::GO:0000398; P:nuclear mRNA splicing, via spliceosome; ISS:UniProtKB.
93Q5EN00    396   END3_MAGO7 Actin cytoskeleton-regulatory comp...730.54     32     29     48GO:0030479; C:actin cortical patch; IEA:UniProtKB-SubCell.::GO:0010008; C:endosome membrane; IEA:UniProtKB-SubCell.::GO:0005886; C:plasma membrane; IEA:UniProtKB-SubCell.
GO:0003779; F:actin binding; IEA:UniProtKB-KW.::GO:0005509; F:calcium ion binding; IEA:InterPro.
GO:0006897; P:endocytosis; IEA:UniProtKB-KW.
94P87173    140   LSM1_SCHPO U6 snRNA-associated Sm-like protei...370.77     31.2     32     68GO:0000932; C:cytoplasmic mRNA processing body; ISS:PomBase.::GO:0005829; C:cytosol; IDA:PomBase.::GO:0005845; C:mRNA cap binding complex; ISS:PomBase.::GO:0005634; C:nucleus; IDA:PomBase.
GO:0000339; F:RNA cap binding; ISS:PomBase.
GO:0000290; P:deadenylation-dependent decapping of nuclear-transcribed mRNA; ISS:PomBase.::GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.
95O59734    78   RUXF_SCHPO Small nuclear ribonucleoprotein F ...541     29.6     33     57GO:0005829; C:cytosol; IDA:PomBase.::GO:0005681; C:spliceosomal complex; IC:PomBase.::GO:0005685; C:U1 snRNP; IDA:PomBase.::GO:0046540; C:U4/U6 x U5 tri-snRNP complex; ISS:PomBase.
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0000395; P:nuclear mRNA 5'-splice site recognition; IC:PomBase.
96Q18786    118   SMD2_CAEEL Probable small nuclear ribonucleop...471.2     30.4     32     60GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.::GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW.
GO:0005515; F:protein binding; IPI:IntAct.
GO:0006915; P:apoptotic process; IMP:WormBase.::GO:0016477; P:cell migration; IMP:WormBase.::GO:0009792; P:embryo development ending in birth or egg hatching; IMP:WormBase.::GO:0007281; P:germ cell development; IMP:WormBase.::GO:0008406; P:gonad development; IMP:WormBase.::GO:0040007; P:growth; IMP:WormBase.::GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0040027; P:negative regulation of vulval development; IMP:WormBase.::GO:0002119; P:nematode larval development; IMP:WormBase.::GO:0006898; P:receptor-mediated endocytosis; IMP:WormBase.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.::GO:0032940; P:secretion by cell; IMP:WormBase.
97A8NHT8    95   LSM6_COPC7 U6 snRNA-associated Sm-like protei...551.3     30     29     49GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.::GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW.
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.::GO:0006364; P:rRNA processing; IEA:UniProtKB-KW.::GO:0008033; P:tRNA processing; IEA:UniProtKB-KW.
98Q1ZXD5    94   NAA38_DICDI N-alpha-acetyltransferase 38, Nat...481.5     29.6     29     54GO:0005730; C:nucleolus; ISS:dictyBase.::GO:0005732; C:small nucleolar ribonucleoprotein complex; ISS:dictyBase.::GO:0046540; C:U4/U6 x U5 tri-snRNP complex; ISS:dictyBase.::GO:0005688; C:U6 snRNP; ISS:dictyBase.
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006402; P:mRNA catabolic process; ISS:dictyBase.::GO:0000398; P:nuclear mRNA splicing, via spliceosome; ISS:dictyBase.
99Q55A45    274   RSMB_DICDI Small nuclear ribonucleoprotein-as...522     30     31     52GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.::GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW.
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
100P91918    160   RSMB_CAEEL Probable small nuclear ribonucleop...352.8     29.6     34     57GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.::GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW.
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0009792; P:embryo development ending in birth or egg hatching; IMP:WormBase.::GO:0040007; P:growth; IMP:WormBase.::GO:0002009; P:morphogenesis of an epithelium; IMP:WormBase.::GO:0040027; P:negative regulation of vulval development; IMP:WormBase.::GO:0002119; P:nematode larval development; IMP:WormBase.::GO:0006898; P:receptor-mediated endocytosis; IMP:WormBase.::GO:0000003; P:reproduction; IMP:WormBase.
101Q8SQH7    70   LSMH_ENCCU Probable U6 snRNA-associated Sm-li...672.9     28.5     28     51GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.::GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW.
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.
102Q482U1    151   RIMP_COLP3 Ribosome maturation factor RimP OS...423.3     29.3     33     64GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0042254; P:ribosome biogenesis; IEA:UniProtKB-KW.
103Q2H2V8    402   END3_CHAGB Actin cytoskeleton-regulatory comp...693.7     29.6     25     51GO:0030479; C:actin cortical patch; IEA:UniProtKB-SubCell.::GO:0010008; C:endosome membrane; IEA:UniProtKB-SubCell.::GO:0005886; C:plasma membrane; IEA:UniProtKB-SubCell.
GO:0003779; F:actin binding; IEA:UniProtKB-KW.::GO:0005509; F:calcium ion binding; IEA:InterPro.
GO:0006897; P:endocytosis; IEA:UniProtKB-KW.
104Q54NC5    112   SMD2_DICDI Probable small nuclear ribonucleop...474.7     28.9     32     62GO:0030532; C:small nuclear ribonucleoprotein complex; ISS:UniProtKB.
GO:0000398; P:nuclear mRNA splicing, via spliceosome; ISS:UniProtKB.
105B2S2E6    122   RL14_TREPS 50S ribosomal protein L14 OS=Trepo...484.8     28.9     33     56GO:0015934; C:large ribosomal subunit; IEA:InterPro.
GO:0019843; F:rRNA binding; IEA:UniProtKB-KW.::GO:0003735; F:structural constituent of ribosome; IEA:InterPro.
GO:0006412; P:translation; IEA:InterPro.
106O83229    122   RL14_TREPA 50S ribosomal protein L14 OS=Trepo...484.8     28.9     33     56GO:0015934; C:large ribosomal subunit; IEA:InterPro.
GO:0019843; F:rRNA binding; IEA:UniProtKB-KW.::GO:0003735; F:structural constituent of ribosome; IEA:InterPro.
GO:0006412; P:translation; IEA:InterPro.
107Q552U1    88   LSM6_DICDI Probable U6 snRNA-associated Sm-li...646.2     28.1     27     48GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0005730; C:nucleolus; ISS:dictyBase.::GO:0005732; C:small nucleolar ribonucleoprotein complex; ISS:dictyBase.::GO:0046540; C:U4/U6 x U5 tri-snRNP complex; ISS:dictyBase.::GO:0005688; C:U6 snRNP; ISS:dictyBase.
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006402; P:mRNA catabolic process; ISS:dictyBase.::GO:0000398; P:nuclear mRNA splicing, via spliceosome; ISS:dictyBase.::GO:0006364; P:rRNA processing; IEA:UniProtKB-KW.::GO:0008033; P:tRNA processing; IEA:UniProtKB-KW.
108A6SIJ6    404   END3_BOTFB Actin cytoskeleton-regulatory comp...466.7     28.9     33     54GO:0030479; C:actin cortical patch; IEA:UniProtKB-SubCell.::GO:0010008; C:endosome membrane; IEA:UniProtKB-SubCell.::GO:0005886; C:plasma membrane; IEA:UniProtKB-SubCell.
GO:0003779; F:actin binding; IEA:UniProtKB-KW.::GO:0005509; F:calcium ion binding; IEA:InterPro.
GO:0006897; P:endocytosis; IEA:UniProtKB-KW.
109Q54HH8    257   SMDL_DICDI Small nuclear ribonucleoprotein Sm...608.8     28.5     23     53GO:0030532; C:small nuclear ribonucleoprotein complex; ISS:UniProtKB.
GO:0000398; P:nuclear mRNA splicing, via spliceosome; ISS:UniProtKB.
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