Fungal Genome Collection
University of Nebraska Lincoln
School of Biological Sciences and Center for Plant Science Innovation
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UniProt_SwissProt BLAST: Single locus
Species:
Saccharomyces cerevisiae S288C
Locus:
YER146W
Length:
93
Number of sequences:
5887
Description:
YER146W LSM5 SGDID:S000000948, Chr V from 462585-462866, Genome Release 64-1-1, Verified ORF, "Lsm (Like Sm) protein; part of heteroheptameric complexes (Lsm2p-7p and either Lsm1p or 8p): cytoplasmic Lsm1p complex involved in mRNA decay; nuclear Lsm8p complex part of U6 snRNP and possibly involved in processing tRNA, snoRNA, and rRNA"
rec.SubjectHit LengthDescriptionAlign.LenE valueBit score% ident.  % pos.GO associations
1P40089    93   LSM5_YEAST U6 snRNA-associated Sm-like protei...934e-61     187     100     100GO:0005730; C:nucleolus; IDA:SGD.::GO:0005732; C:small nucleolar ribonucleoprotein complex; IPI:SGD.::GO:0046540; C:U4/U6 x U5 tri-snRNP complex; IDA:SGD.::GO:0005688; C:U6 snRNP; IDA:SGD.
GO:0005515; F:protein binding; IPI:IntAct.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0000398; P:nuclear mRNA splicing, via spliceosome; IPI:SGD.::GO:0000956; P:nuclear-transcribed mRNA catabolic process; TAS:SGD.::GO:0006364; P:rRNA processing; IEA:UniProtKB-KW.::GO:0008033; P:tRNA processing; IEA:UniProtKB-KW.
2O42978    80   LSM5_SCHPO U6 snRNA-associated Sm-like protei...816e-20     82     47     67GO:0005730; C:nucleolus; ISS:PomBase.::GO:0005732; C:small nucleolar ribonucleoprotein complex; ISS:PomBase.::GO:0005681; C:spliceosomal complex; NAS:PomBase.::GO:0046540; C:U4/U6 x U5 tri-snRNP complex; ISS:PomBase.::GO:0005688; C:U6 snRNP; ISS:PomBase.
GO:0003723; F:RNA binding; ISS:PomBase.
GO:0006402; P:mRNA catabolic process; ISS:PomBase.::GO:0045292; P:nuclear mRNA cis splicing, via spliceosome; ISS:PomBase.::GO:0006364; P:rRNA processing; ISS:PomBase.::GO:0008033; P:tRNA processing; IEA:UniProtKB-KW.
3Q5R628    91   LSM5_PONAB U6 snRNA-associated Sm-like protei...823e-19     80.1     51     74GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.::GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW.
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.
4P62322    91   LSM5_MOUSE U6 snRNA-associated Sm-like protei...823e-19     80.1     51     74GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.::GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW.
GO:0005515; F:protein binding; IPI:MGI.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.
5Q9Y4Y9    91   LSM5_HUMAN U6 snRNA-associated Sm-like protei...823e-19     80.1     51     74GO:0005829; C:cytosol; TAS:Reactome.::GO:0005634; C:nucleus; TAS:ProtInc.::GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW.
GO:0005515; F:protein binding; IPI:IntAct.::GO:0003723; F:RNA binding; TAS:ProtInc.
GO:0043928; P:exonucleolytic nuclear-transcribed mRNA catabolic process involved in deadenylation-dependent decay; TAS:Reactome.::GO:0006397; P:mRNA processing; TAS:ProtInc.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.
6Q2HJH0    91   LSM5_BOVIN U6 snRNA-associated Sm-like protei...823e-19     80.1     51     74GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.::GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW.
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.
7Q55EX5    97   LSM5_DICDI Probable U6 snRNA-associated Sm-li...880.00000000000002     67.8     39     67GO:0005730; C:nucleolus; ISS:dictyBase.::GO:0005732; C:small nucleolar ribonucleoprotein complex; ISS:dictyBase.::GO:0046540; C:U4/U6 x U5 tri-snRNP complex; ISS:dictyBase.::GO:0005688; C:U6 snRNP; ISS:dictyBase.
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006402; P:mRNA catabolic process; ISS:dictyBase.::GO:0000398; P:nuclear mRNA splicing, via spliceosome; ISS:dictyBase.
8Q5JIE0    76   RUXX_PYRKO Putative snRNP Sm-like protein OS=...760.000000002     53.9     37     66GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW.
9Q9V0Y8    75   RUXX_PYRAB Putative snRNP Sm-like protein OS=...760.000000006     52.4     34     66GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW.
GO:0003676; F:nucleic acid binding; IEA:UniProtKB-KW.
10Q8U0P4    76   RUXX_PYRFU Putative snRNP Sm-like protein OS=...760.000000008     52.4     36     66GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW.
11O74016    75   RUXX_PYRHO Putative snRNP Sm-like protein OS=...760.00000001     52     34     66GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW.
12C6A1T2    76   RUXX_THESM Putative snRNP Sm-like protein OS=...760.00000004     50.4     33     66GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW.
13C5A1H1    76   RUXX_THEGJ Putative snRNP Sm-like protein OS=...760.00000008     49.3     30     64GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW.
14B6YUU5    78   RUXX_THEON Putative snRNP Sm-like protein OS=...760.0000001     48.9     32     64GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW.
15Q9UK45    103   LSM7_HUMAN U6 snRNA-associated Sm-like protei...720.0000002     48.9     26     58GO:0005829; C:cytosol; TAS:Reactome.::GO:0005634; C:nucleus; NAS:UniProtKB.::GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW.
GO:0005515; F:protein binding; IPI:IntAct.::GO:0017070; F:U6 snRNA binding; NAS:UniProtKB.
GO:0043928; P:exonucleolytic nuclear-transcribed mRNA catabolic process involved in deadenylation-dependent decay; TAS:Reactome.::GO:0000398; P:nuclear mRNA splicing, via spliceosome; NAS:UniProtKB.
16Q9CQQ8    103   LSM7_MOUSE U6 snRNA-associated Sm-like protei...720.0000003     48.1     26     58GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.::GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW.
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.
17O29386    77   RUXX_ARCFU Putative snRNP Sm-like protein OS=...810.0000005     47.4     31     62GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW.
18P57670    83   RUXX_THEAC Putative snRNP Sm-like protein OS=...780.0000007     47     29     64GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW.
19Q97BU5    83   RUXX_THEVO Putative snRNP Sm-like protein OS=...760.000002     45.8     32     61GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW.
20O26745    81   RUXX_METTH Putative snRNP Sm-like protein OS=...760.000003     45.1     37     57GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW.
21Q12U30    72   RUXX_METBU Putative snRNP Sm-like protein OS=...760.000009     43.5     26     62GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW.
22A1XQR9    92   RUXE_PIG Small nuclear ribonucleoprotein E OS...630.000009     43.9     37     63GO:0005681; C:spliceosomal complex; IEA:UniProtKB-KW.::GO:0005683; C:U7 snRNP; ISS:UniProtKB.
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.
23P62305    92   RUXE_MOUSE Small nuclear ribonucleoprotein E ...630.000009     43.9     37     63GO:0005683; C:U7 snRNP; ISS:UniProtKB.
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.
24P62304    92   RUXE_HUMAN Small nuclear ribonucleoprotein E ...630.000009     43.9     37     63GO:0071013; C:catalytic step 2 spliceosome; IDA:UniProtKB.::GO:0005829; C:cytosol; TAS:Reactome.::GO:0005654; C:nucleoplasm; TAS:Reactome.::GO:0005689; C:U12-type spliceosomal complex; IDA:UniProtKB.::GO:0005683; C:U7 snRNP; IDA:UniProtKB.
GO:0005515; F:protein binding; IPI:UniProtKB.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0008334; P:histone mRNA metabolic process; TAS:Reactome.::GO:0034660; P:ncRNA metabolic process; TAS:Reactome.::GO:0000245; P:spliceosomal complex assembly; NAS:UniProtKB.::GO:0000387; P:spliceosomal snRNP assembly; TAS:Reactome.::GO:0006369; P:termination of RNA polymerase II transcription; TAS:Reactome.
25P62303    92   RUXE_CHICK Small nuclear ribonucleoprotein E ...630.000009     43.9     37     63GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.::GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW.
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.
26A4FUI2    92   RUXE_BOVIN Small nuclear ribonucleoprotein E ...630.000009     43.9     37     63GO:0005681; C:spliceosomal complex; IEA:UniProtKB-KW.::GO:0005683; C:U7 snRNP; ISS:UniProtKB.
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.
27Q465S1    72   RUXX_METBF Putative snRNP Sm-like protein OS=...760.00001     43.5     28     59GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW.
28Q8TL47    72   RUXX_METAC Putative snRNP Sm-like protein OS=...760.00004     41.6     26     59GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW.
29Q0W8R9    72   RUXX_UNCMA Putative snRNP Sm-like protein OS=...760.00005     41.6     26     58GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW.
30Q9USZ3    84   RUXE_SCHPO Small nuclear ribonucleoprotein E ...780.00005     41.6     31     58GO:0005829; C:cytosol; IDA:PomBase.::GO:0005685; C:U1 snRNP; IDA:PomBase.::GO:0046540; C:U4/U6 x U5 tri-snRNP complex; ISS:PomBase.
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0000395; P:nuclear mRNA 5'-splice site recognition; IC:PomBase.
31Q7ZUG0    92   RUXE_DANRE Small nuclear ribonucleoprotein E ...570.00007     41.2     37     65GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.::GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW.
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.
records
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