Fungal Genome Collection
University of Nebraska Lincoln
School of Biological Sciences and Center for Plant Science Innovation
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UniProt_SwissProt BLAST: Single locus
Species:
Saccharomyces cerevisiae S288C
Locus:
YER139C
Length:
226
Number of sequences:
5887
Description:
YER139C RTR1 SGDID:S000000941, Chr V from 451243-450563, Genome Release 64-1-1, reverse complement, Verified ORF, "CTD phosphatase; dephosphorylates S5-P in the C-terminal domain of Rpo21p; has a cysteine-rich motif required for function and conserved in eukaryotes; shuttles between the nucleus and cytoplasm"
rec.SubjectHit LengthDescriptionAlign.LenE valueBit score% ident.  % pos.GO associations
1P40084    226   RTR1_YEAST RNA polymerase II subunit B1 CTD p...2262e-166     465     100     100GO:0005737; C:cytoplasm; IDA:SGD.::GO:0005634; C:nucleus; IDA:SGD.
GO:0008420; F:CTD phosphatase activity; IDA:SGD.::GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
GO:0070940; P:dephosphorylation of RNA polymerase II C-terminal domain; IDA:SGD.::GO:0006366; P:transcription from RNA polymerase II promoter; IMP:SGD.
2Q12378    196   RTR2_YEAST RNA polymerase II subunit B1 CTD p...1815e-26     105     35     54GO:0005737; C:cytoplasm; IDA:SGD.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.::GO:0004721; F:phosphoprotein phosphatase activity; IEA:UniProtKB-KW.
GO:0006355; P:regulation of transcription, DNA-dependent; IEA:UniProtKB-KW.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW.
3Q8VC34    614   RPAP2_MOUSE Putative RNA polymerase II subuni...940.000000007     58.9     35     54GO:0005737; C:cytoplasm; ISS:UniProtKB.::GO:0016591; C:DNA-directed RNA polymerase II, holoenzyme; ISS:UniProtKB.
GO:0008420; F:CTD phosphatase activity; ISS:UniProtKB.::GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
GO:0070940; P:dephosphorylation of RNA polymerase II C-terminal domain; ISS:UniProtKB.::GO:0009301; P:snRNA transcription; ISS:UniProtKB.
4Q8IXW5    612   RPAP2_HUMAN Putative RNA polymerase II subuni...850.00000002     57.4     33     54GO:0005737; C:cytoplasm; IDA:UniProtKB.::GO:0016591; C:DNA-directed RNA polymerase II, holoenzyme; IDA:UniProtKB.
GO:0008420; F:CTD phosphatase activity; IMP:UniProtKB.::GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
GO:0070940; P:dephosphorylation of RNA polymerase II C-terminal domain; IMP:UniProtKB.::GO:0009301; P:snRNA transcription; IMP:UniProtKB.
5Q5I0E6    609   RPAP2_RAT RNA polymerase II subunit B1 CTD ph...940.00000003     57     34     53GO:0005737; C:cytoplasm; ISS:UniProtKB.::GO:0016591; C:DNA-directed RNA polymerase II, holoenzyme; ISS:UniProtKB.
GO:0008420; F:CTD phosphatase activity; ISS:UniProtKB.::GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
GO:0070940; P:dephosphorylation of RNA polymerase II C-terminal domain; ISS:UniProtKB.::GO:0009301; P:snRNA transcription; ISS:UniProtKB.
6Q5RA37    612   RPAP2_PONAB Putative RNA polymerase II subuni...850.00000005     56.2     32     54GO:0005737; C:cytoplasm; ISS:UniProtKB.::GO:0016591; C:DNA-directed RNA polymerase II, holoenzyme; ISS:UniProtKB.
GO:0008420; F:CTD phosphatase activity; ISS:UniProtKB.::GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
GO:0070940; P:dephosphorylation of RNA polymerase II C-terminal domain; ISS:UniProtKB.::GO:0009301; P:snRNA transcription; ISS:UniProtKB.
7F6RRD7    608   RPAP2_BOVIN Putative RNA polymerase II subuni...960.00000007     55.8     31     52GO:0005737; C:cytoplasm; ISS:UniProtKB.::GO:0016591; C:DNA-directed RNA polymerase II, holoenzyme; ISS:UniProtKB.
GO:0008420; F:CTD phosphatase activity; ISS:UniProtKB.::GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
GO:0070940; P:dephosphorylation of RNA polymerase II C-terminal domain; ISS:UniProtKB.::GO:0009301; P:snRNA transcription; ISS:UniProtKB.
8O42853    197   RPAP2_SCHPO Putative RNA polymerase II subuni...1050.00000009     53.9     35     50GO:0005829; C:cytosol; IDA:PomBase.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0008420; F:CTD phosphatase activity; ISS:PomBase.::GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
GO:0070940; P:dephosphorylation of RNA polymerase II C-terminal domain; ISS:PomBase.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW.
9A8DYY5    143   RPAP2_DROME Putative RNA polymerase II subuni...1320.000003     48.5     26     45GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.::GO:0004721; F:phosphoprotein phosphatase activity; IEA:UniProtKB-KW.
10B0UYH6    601   RPAP2_DANRE Putative RNA polymerase II subuni...860.00009     46.6     30     55GO:0005737; C:cytoplasm; ISS:UniProtKB.::GO:0016591; C:DNA-directed RNA polymerase II, holoenzyme; ISS:UniProtKB.
GO:0008420; F:CTD phosphatase activity; ISS:UniProtKB.::GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
GO:0070940; P:dephosphorylation of RNA polymerase II C-terminal domain; ISS:UniProtKB.::GO:0009301; P:snRNA transcription; ISS:UniProtKB.
11P30641    455   RPAP2_CAEEL Putative RNA polymerase II subuni...750.007     40.4     29     56GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.::GO:0004721; F:phosphoprotein phosphatase activity; IEA:UniProtKB-KW.
GO:0009792; P:embryo development ending in birth or egg hatching; IMP:WormBase.::GO:0040035; P:hermaphrodite genitalia development; IMP:WormBase.::GO:0040039; P:inductive cell migration; IMP:WormBase.::GO:0002009; P:morphogenesis of an epithelium; IMP:WormBase.::GO:0040010; P:positive regulation of growth rate; IMP:WormBase.::GO:0006898; P:receptor-mediated endocytosis; IMP:WormBase.
12Q80W57    657   ABCG2_RAT ATP-binding cassette sub-family G m...541.1     33.9     35     54GO:0016324; C:apical plasma membrane; IDA:RGD.::GO:0016021; C:integral to membrane; IEA:UniProtKB-KW.::GO:0005624; C:membrane fraction; IDA:RGD.::GO:0005634; C:nucleus; IDA:RGD.
GO:0005524; F:ATP binding; IEA:UniProtKB-KW.::GO:0042626; F:ATPase activity, coupled to transmembrane movement of substances; TAS:RGD.::GO:0015238; F:drug transmembrane transporter activity; IDA:RGD.::GO:0046983; F:protein dimerization activity; IDA:RGD.
GO:0046618; P:drug export; IMP:RGD.::GO:0060136; P:embryonic process involved in female pregnancy; IDA:RGD.::GO:0051593; P:response to folic acid; IEP:RGD.::GO:0051384; P:response to glucocorticoid stimulus; IEP:RGD.
13A0L669    472   SYE_MAGSM Glutamate--tRNA ligase OS=Magnetoco...912.8     32.7     27     48GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0005524; F:ATP binding; IEA:UniProtKB-KW.::GO:0004818; F:glutamate-tRNA ligase activity; IEA:EC.::GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
GO:0006424; P:glutamyl-tRNA aminoacylation; IEA:InterPro.
14C4L0S1    468   LUTB_EXISA Lactate utilization protein B OS=E...964.7     32     28     46
GO:0051539; F:4 iron, 4 sulfur cluster binding; IEA:UniProtKB-KW.::GO:0009055; F:electron carrier activity; IEA:InterPro.::GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.::GO:0016491; F:oxidoreductase activity; IEA:InterPro.
GO:0022900; P:electron transport chain; IEA:UniProtKB-KW.::GO:0019516; P:lactate oxidation; IEA:InterPro.::GO:0006810; P:transport; IEA:UniProtKB-KW.
15Q2LY16    280   CBIO_SYNAS Cobalt import ATP-binding protein ...637.3     31.2     37     54GO:0005886; C:plasma membrane; IEA:UniProtKB-SubCell.
GO:0005524; F:ATP binding; IEA:UniProtKB-KW.::GO:0016887; F:ATPase activity; IEA:InterPro.
GO:0009236; P:cobalamin biosynthetic process; IEA:UniProtKB-KW.::GO:0006824; P:cobalt ion transport; IEA:UniProtKB-KW.
records
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