Fungal Genome Collection
University of Nebraska Lincoln
School of Biological Sciences and Center for Plant Science Innovation
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UniProt_SwissProt BLAST: Single locus
Species:
Saccharomyces cerevisiae S288C
Locus:
YER137C
Length:
440
Number of sequences:
5887
Description:
YER137C-A YER137C-A SGDID:S000007402, Chr V from 449024-447702, Genome Release 64-1-1, reverse complement, transposable_element_gene, "Retrotransposon TYA Gag gene co-transcribed with TYB Pol; translated as TYA or TYA-TYB polyprotein; Gag is a nucleocapsid protein that is the structural constituent of virus-like particles (VLPs); similar to retroviral Gag"
rec.SubjectHit LengthDescriptionAlign.LenE valueBit score% ident.  % pos.GO associations
1P40083    148   YEW7_YEAST Uncharacterized protein YEL137C OS...1483e-104     301     100     100
GO:0003676; F:nucleic acid binding; IEA:InterPro.::GO:0008270; F:zinc ion binding; IEA:InterPro.
2Q13472    1001   TOP3A_HUMAN DNA topoisomerase 3-alpha OS=Homo...440.12     35.8     36     55GO:0005694; C:chromosome; IEA:InterPro.::GO:0016605; C:PML body; IDA:UniProtKB.
GO:0005524; F:ATP binding; IEA:UniProtKB-KW.::GO:0003917; F:DNA topoisomerase type I activity; IEA:EC.::GO:0005515; F:protein binding; IPI:UniProtKB.::GO:0008270; F:zinc ion binding; IEA:InterPro.
GO:0006265; P:DNA topological change; IEA:InterPro.::GO:0007126; P:meiosis; TAS:ProtInc.
3Q08DL1    402   ZCH12_BOVIN Zinc finger CCHC domain-containin...300.24     34.7     37     70
GO:0003676; F:nucleic acid binding; IEA:InterPro.::GO:0008270; F:zinc ion binding; IEA:InterPro.
GO:0006355; P:regulation of transcription, DNA-dependent; IEA:UniProtKB-KW.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW.
4Q6PEW1    402   ZCH12_HUMAN Zinc finger CCHC domain-containin...300.29     34.3     37     67
GO:0003676; F:nucleic acid binding; IEA:InterPro.::GO:0008270; F:zinc ion binding; IEA:InterPro.
GO:0006355; P:regulation of transcription, DNA-dependent; IEA:UniProtKB-KW.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW.
5O70157    1003   TOP3A_MOUSE DNA topoisomerase 3-alpha OS=Mus ...281.4     32.3     50     61GO:0005694; C:chromosome; IEA:InterPro.
GO:0005524; F:ATP binding; IEA:UniProtKB-KW.::GO:0003917; F:DNA topoisomerase type I activity; IEA:EC.::GO:0008270; F:zinc ion binding; IEA:InterPro.
GO:0006265; P:DNA topological change; IEA:InterPro.
6Q91W86    941   VPS11_MOUSE Vacuolar protein sorting-associat...651.8     32.3     26     52GO:0005884; C:actin filament; IDA:MGI.::GO:0005769; C:early endosome; IDA:MGI.::GO:0030139; C:endocytic vesicle; ISS:UniProtKB.::GO:0031902; C:late endosome membrane; IEA:UniProtKB-SubCell.::GO:0005765; C:lysosomal membrane; IEA:UniProtKB-SubCell.
GO:0000166; F:nucleotide binding; IEA:UniProtKB-KW.::GO:0005515; F:protein binding; IPI:IntAct.::GO:0008270; F:zinc ion binding; IEA:InterPro.
GO:0006886; P:intracellular protein transport; IEA:InterPro.::GO:0016192; P:vesicle-mediated transport; IEA:InterPro.
7Q9H270    941   VPS11_HUMAN Vacuolar protein sorting-associat...652     32     26     52GO:0030139; C:endocytic vesicle; IDA:UniProtKB.::GO:0030897; C:HOPS complex; IDA:UniProtKB.::GO:0031902; C:late endosome membrane; IEA:UniProtKB-SubCell.::GO:0005765; C:lysosomal membrane; IEA:UniProtKB-SubCell.
GO:0000166; F:nucleotide binding; IEA:UniProtKB-KW.::GO:0008270; F:zinc ion binding; IEA:InterPro.
GO:0006886; P:intracellular protein transport; IEA:InterPro.::GO:0016192; P:vesicle-mediated transport; IEA:InterPro.
8Q9CZA5    402   ZCH12_MOUSE Zinc finger CCHC domain-containin...313.8     31.2     35     61GO:0016607; C:nuclear speck; IDA:MGI.
GO:0030374; F:ligand-dependent nuclear receptor transcription coactivator activity; IDA:MGI.::GO:0003676; F:nucleic acid binding; IEA:InterPro.::GO:0032183; F:SUMO binding; IDA:MGI.::GO:0008270; F:zinc ion binding; IEA:InterPro.
GO:0030509; P:BMP signaling pathway; IDA:MGI.::GO:2000327; P:positive regulation of ligand-dependent nuclear receptor transcription coactivator activity; IDA:MGI.::GO:0006355; P:regulation of transcription, DNA-dependent; IEA:UniProtKB-KW.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW.
9Q9VKJ3    1411   NU160_DROME Nuclear pore complex protein Nup1...489.4     30     35     56GO:0005643; C:nuclear pore; IDA:UniProtKB.
GO:0005515; F:protein binding; IPI:UniProtKB.
GO:0051028; P:mRNA transport; IEA:UniProtKB-KW.::GO:0007184; P:SMAD protein import into nucleus; IMP:FlyBase.
records
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