Fungal Genome Collection
University of Nebraska Lincoln
School of Biological Sciences and Center for Plant Science Innovation
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UniProt_SwissProt BLAST: Single locus
Species:
Saccharomyces cerevisiae S288C
Locus:
YER112W
Length:
187
Number of sequences:
5887
Description:
YER112W LSM4 SGDID:S000000914, Chr V from 387232-387795, Genome Release 64-1-1, Verified ORF, "Lsm (Like Sm) protein; part of heteroheptameric complexes (Lsm2p-7p and either Lsm1p or 8p): cytoplasmic Lsm1p complex involved in mRNA decay; nuclear Lsm8p complex part of U6 snRNP and possibly involved in processing tRNA, snoRNA, and rRNA"
rec.SubjectHit LengthDescriptionAlign.LenE valueBit score% ident.  % pos.GO associations
31O35900    95   LSM2_MOUSE U6 snRNA-associated Sm-like protei...760.052     35.4     25     54GO:0005681; C:spliceosomal complex; IEA:UniProtKB-KW.
GO:0019901; F:protein kinase binding; IDA:MGI.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.
32Q9Y333    95   LSM2_HUMAN U6 snRNA-associated Sm-like protei...760.052     35.4     25     54GO:0071013; C:catalytic step 2 spliceosome; IDA:UniProtKB.::GO:0005829; C:cytosol; TAS:Reactome.::GO:0005654; C:nucleoplasm; TAS:Reactome.
GO:0017070; F:U6 snRNA binding; NAS:UniProtKB.
GO:0043928; P:exonucleolytic nuclear-transcribed mRNA catabolic process involved in deadenylation-dependent decay; TAS:Reactome.::GO:0000398; P:nuclear mRNA splicing, via spliceosome; NAS:UniProtKB.
33Q10163    147   RSMB_SCHPO Small nuclear ribonucleoprotein-as...920.062     36.2     28     40GO:0005829; C:cytosol; IDA:PomBase.::GO:0005681; C:spliceosomal complex; IC:PomBase.::GO:0005685; C:U1 snRNP; IDA:PomBase.::GO:0046540; C:U4/U6 x U5 tri-snRNP complex; ISS:PomBase.
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0000395; P:nuclear mRNA 5'-splice site recognition; IC:PomBase.
34O44437    151   SMD3_DROME Small nuclear ribonucleoprotein Sm...840.16     35     26     49GO:0071013; C:catalytic step 2 spliceosome; IDA:FlyBase.::GO:0045495; C:pole plasm; IDA:FlyBase.::GO:0071011; C:precatalytic spliceosome; IDA:FlyBase.::GO:0030532; C:small nuclear ribonucleoprotein complex; ISS:FlyBase.
GO:0007417; P:central nervous system development; IMP:FlyBase.::GO:0048542; P:lymph gland development; IMP:FlyBase.::GO:0007067; P:mitosis; IMP:FlyBase.::GO:0007052; P:mitotic spindle organization; IMP:FlyBase.::GO:0007517; P:muscle organ development; IMP:FlyBase.::GO:0030182; P:neuron differentiation; IMP:FlyBase.::GO:0000398; P:nuclear mRNA splicing, via spliceosome; ISS:FlyBase.::GO:0007422; P:peripheral nervous system development; IMP:FlyBase.::GO:0045451; P:pole plasm oskar mRNA localization; IMP:FlyBase.
35Q24297    88   RUXF_DROME Small nuclear ribonucleoprotein F ...780.18     33.9     29     49GO:0071013; C:catalytic step 2 spliceosome; IDA:FlyBase.::GO:0071011; C:precatalytic spliceosome; IDA:FlyBase.::GO:0030532; C:small nuclear ribonucleoprotein complex; NAS:UniProtKB.
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0007052; P:mitotic spindle organization; IMP:FlyBase.::GO:0000398; P:nuclear mRNA splicing, via spliceosome; NAS:UniProtKB.
36Q54XP2    91   RUXF_DICDI Small nuclear ribonucleoprotein F ...470.21     33.5     36     64GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.::GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW.
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.
37Q9SUM2    88   RUXF_ARATH Probable small nuclear ribonucleop...440.24     33.5     41     59GO:0005829; C:cytosol; IDA:TAIR.::GO:0005730; C:nucleolus; IDA:TAIR.::GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW.
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.
38A6R363    80   LSM6_AJECN U6 snRNA-associated Sm-like protei...440.25     33.1     32     55GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.::GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW.
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.::GO:0006364; P:rRNA processing; IEA:UniProtKB-KW.::GO:0008033; P:tRNA processing; IEA:UniProtKB-KW.
39Q02260    146   SMD1_YEAST Small nuclear ribonucleoprotein Sm...1240.28     34.3     28     44GO:0000243; C:commitment complex; IPI:SGD.::GO:0005685; C:U1 snRNP; IDA:SGD.::GO:0071004; C:U2-type prespliceosome; IDA:SGD.::GO:0046540; C:U4/U6 x U5 tri-snRNP complex; IDA:SGD.::GO:0005682; C:U5 snRNP; IDA:SGD.
GO:0003729; F:mRNA binding; IPI:SGD.
GO:0000398; P:nuclear mRNA splicing, via spliceosome; IMP:UniProtKB.
40Q9UUI1    75   LSM6_SCHPO U6 snRNA-associated Sm-like protei...410.34     32.7     37     56GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0046540; C:U4/U6 x U5 tri-snRNP complex; ISS:PomBase.::GO:0005688; C:U6 snRNP; ISS:PomBase.
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0030490; P:maturation of SSU-rRNA; ISS:PomBase.::GO:0045292; P:nuclear mRNA cis splicing, via spliceosome; ISS:PomBase.::GO:0008033; P:tRNA processing; IEA:UniProtKB-KW.
41P62321    86   RUXF_XENLA Small nuclear ribonucleoprotein F ...740.46     32.7     31     47GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.::GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW.
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.
42P62307    86   RUXF_MOUSE Small nuclear ribonucleoprotein F ...740.46     32.7     31     47GO:0005681; C:spliceosomal complex; IEA:UniProtKB-KW.::GO:0005683; C:U7 snRNP; ISS:UniProtKB.
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.
43P62306    86   RUXF_HUMAN Small nuclear ribonucleoprotein F ...740.46     32.7     31     47GO:0071013; C:catalytic step 2 spliceosome; IDA:UniProtKB.::GO:0005829; C:cytosol; TAS:Reactome.::GO:0005654; C:nucleoplasm; TAS:Reactome.::GO:0005689; C:U12-type spliceosomal complex; IDA:UniProtKB.::GO:0005683; C:U7 snRNP; IDA:UniProtKB.
GO:0003723; F:RNA binding; IMP:UniProtKB.
GO:0008334; P:histone mRNA metabolic process; TAS:Reactome.::GO:0034660; P:ncRNA metabolic process; TAS:Reactome.::GO:0000387; P:spliceosomal snRNP assembly; TAS:Reactome.::GO:0006369; P:termination of RNA polymerase II transcription; TAS:Reactome.
44Q3T0Z8    86   RUXF_BOVIN Small nuclear ribonucleoprotein F ...740.46     32.7     31     47GO:0005683; C:U7 snRNP; ISS:UniProtKB.
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.
45P34659    85   RUXF_CAEEL Probable small nuclear ribonucleop...700.51     32.3     34     51GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.::GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW.
GO:0005515; F:protein binding; IPI:IntAct.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006915; P:apoptotic process; IMP:WormBase.::GO:0009792; P:embryo development ending in birth or egg hatching; IMP:WormBase.::GO:0040007; P:growth; IMP:WormBase.::GO:0040039; P:inductive cell migration; IMP:WormBase.::GO:0018996; P:molting cycle, collagen and cuticulin-based cuticle; IMP:WormBase.::GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0040027; P:negative regulation of vulval development; IMP:WormBase.::GO:0002119; P:nematode larval development; IMP:WormBase.::GO:0006898; P:receptor-mediated endocytosis; IMP:WormBase.::GO:0000003; P:reproduction; IMP:WormBase.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.::GO:0032940; P:secretion by cell; IMP:WormBase.
46B2G6V6    752   IF2_LACRJ Translation initiation factor IF-2 ...790.59     34.3     28     49GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0005525; F:GTP binding; IEA:UniProtKB-KW.::GO:0003924; F:GTPase activity; IEA:InterPro.::GO:0003743; F:translation initiation factor activity; IEA:UniProtKB-KW.
47A5VJE0    752   IF2_LACRD Translation initiation factor IF-2 ...790.59     34.3     28     49GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0005525; F:GTP binding; IEA:UniProtKB-KW.::GO:0003924; F:GTPase activity; IEA:InterPro.::GO:0003743; F:translation initiation factor activity; IEA:UniProtKB-KW.
48P0CR24    88   LSM6_CRYNJ U6 snRNA-associated Sm-like protei...830.75     32     22     47GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.::GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW.
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.::GO:0006364; P:rRNA processing; IEA:UniProtKB-KW.::GO:0008033; P:tRNA processing; IEA:UniProtKB-KW.
49P0CR25    88   LSM6_CRYNB U6 snRNA-associated Sm-like protei...830.75     32     22     47GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.::GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW.
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.::GO:0006364; P:rRNA processing; IEA:UniProtKB-KW.::GO:0008033; P:tRNA processing; IEA:UniProtKB-KW.
50Q0UWI9    89   LSM6_PHANO U6 snRNA-associated Sm-like protei...500.78     32     30     52GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.::GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW.
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.::GO:0006364; P:rRNA processing; IEA:UniProtKB-KW.::GO:0008033; P:tRNA processing; IEA:UniProtKB-KW.
51Q59HJ6    961   LONM_BOVIN Lon protease homolog, mitochondria...620.82     33.9     32     53GO:0042645; C:mitochondrial nucleoid; ISS:RefGenome.
GO:0005524; F:ATP binding; ISS:RefGenome.::GO:0004176; F:ATP-dependent peptidase activity; ISS:RefGenome.::GO:0070361; F:mitochondrial light strand promoter anti-sense binding; ISS:RefGenome.::GO:0005515; F:protein binding; IPI:UniProtKB.::GO:0004252; F:serine-type endopeptidase activity; ISS:RefGenome.::GO:0003697; F:single-stranded DNA binding; ISS:RefGenome.::GO:0003727; F:single-stranded RNA binding; ISS:RefGenome.
GO:0034599; P:cellular response to oxidative stress; ISS:RefGenome.::GO:0006515; P:misfolded or incompletely synthesized protein catabolic process; ISS:RefGenome.::GO:0007005; P:mitochondrion organization; ISS:RefGenome.::GO:0070407; P:oxidation-dependent protein catabolic process; ISS:RefGenome.::GO:0051260; P:protein homooligomerization; ISS:RefGenome.::GO:0001666; P:response to hypoxia; ISS:RefGenome.
52O59734    78   RUXF_SCHPO Small nuclear ribonucleoprotein F ...701.2     31.2     31     49GO:0005829; C:cytosol; IDA:PomBase.::GO:0005681; C:spliceosomal complex; IC:PomBase.::GO:0005685; C:U1 snRNP; IDA:PomBase.::GO:0046540; C:U4/U6 x U5 tri-snRNP complex; ISS:PomBase.
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0000395; P:nuclear mRNA 5'-splice site recognition; IC:PomBase.
53Q71ZZ7    782   IF2_LISMF Translation initiation factor IF-2 ...1361.3     33.1     26     44GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0005525; F:GTP binding; IEA:UniProtKB-KW.::GO:0003924; F:GTPase activity; IEA:InterPro.::GO:0003743; F:translation initiation factor activity; IEA:UniProtKB-KW.
54C1L2N1    782   IF2_LISMC Translation initiation factor IF-2 ...1361.3     33.1     26     44GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0005525; F:GTP binding; IEA:UniProtKB-KW.::GO:0003924; F:GTPase activity; IEA:InterPro.::GO:0003743; F:translation initiation factor activity; IEA:UniProtKB-KW.
55Q2HAN0    82   LSM6_CHAGB U6 snRNA-associated Sm-like protei...441.3     31.2     32     55GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.::GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW.
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.::GO:0006364; P:rRNA processing; IEA:UniProtKB-KW.::GO:0008033; P:tRNA processing; IEA:UniProtKB-KW.
56O42661    117   SMD1_SCHPO Small nuclear ribonucleoprotein Sm...731.4     32     30     49GO:0000243; C:commitment complex; ISS:PomBase.::GO:0005829; C:cytosol; IDA:PomBase.::GO:0005685; C:U1 snRNP; IDA:PomBase.::GO:0046540; C:U4/U6 x U5 tri-snRNP complex; ISS:PomBase.
GO:0003729; F:mRNA binding; ISS:PomBase.
GO:0000395; P:nuclear mRNA 5'-splice site recognition; IC:PomBase.
57Q9M3D8    664   LRK13_ARATH L-type lectin-domain containing r...851.8     32.7     27     51GO:0016021; C:integral to membrane; IEA:UniProtKB-KW.::GO:0005886; C:plasma membrane; IDA:UniProtKB.
GO:0005524; F:ATP binding; IEA:UniProtKB-KW.::GO:0004675; F:transmembrane receptor protein serine/threonine kinase activity; IDA:TAIR.
GO:0071369; P:cellular response to ethylene stimulus; IEP:UniProtKB.::GO:0071472; P:cellular response to salt stress; IEP:UniProtKB.::GO:0046777; P:protein autophosphorylation; IDA:UniProtKB.
58Q0W8R9    72   RUXX_UNCMA Putative snRNP Sm-like protein OS=...772.2     30.4     31     44GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW.
59Q9VU02    124   SMD1_DROME Probable small nuclear ribonucleop...732.3     31.2     34     48GO:0071013; C:catalytic step 2 spliceosome; IDA:FlyBase.::GO:0071011; C:precatalytic spliceosome; IDA:FlyBase.::GO:0030532; C:small nuclear ribonucleoprotein complex; ISS:UniProtKB.
GO:0000398; P:nuclear mRNA splicing, via spliceosome; ISS:UniProtKB.
60Q10013    126   SMD1_CAEEL Probable small nuclear ribonucleop...692.7     31.2     33     49GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.::GO:0043186; C:P granule; IDA:WormBase.
GO:0009792; P:embryo development ending in birth or egg hatching; IMP:WormBase.::GO:0007281; P:germ cell development; IMP:WormBase.::GO:0040007; P:growth; IMP:WormBase.::GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0040027; P:negative regulation of vulval development; IMP:WormBase.::GO:0002119; P:nematode larval development; IMP:WormBase.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.
61A7F5M4    85   LSM6_SCLS1 U6 snRNA-associated Sm-like protei...442.8     30.4     30     57GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.::GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW.
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.::GO:0006364; P:rRNA processing; IEA:UniProtKB-KW.::GO:0008033; P:tRNA processing; IEA:UniProtKB-KW.
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