UniProt_SwissProt BLAST: Single locus

Species:

Saccharomyces cerevisiae S288C

Locus:

YER112W

Length:

187

Number of sequences:

5887

Description:

YER112W LSM4 SGDID:S000000914, Chr V from 387232-387795, Genome Release 64-1-1, Verified ORF, "Lsm (Like Sm) protein; part of heteroheptameric complexes (Lsm2p-7p and either Lsm1p or 8p): cytoplasmic Lsm1p complex involved in mRNA decay; nuclear Lsm8p complex part of U6 snRNP and possibly involved in processing tRNA, snoRNA, and rRNA"

rec.	Subject	Hit Length	Description	Align.Len	E value	Bit score	% ident.	% pos.	GO associations
1	P40070	187	LSM4_YEAST U6 snRNA-associated Sm-like protei...	187	1e-127	363	100	100	GO:0000932; C:cytoplasmic mRNA processing body; IDA:SGD.::GO:0005730; C:nucleolus; IDA:SGD.::GO:0005732; C:small nucleolar ribonucleoprotein complex; IPI:SGD.::GO:0046540; C:U4/U6 x U5 tri-snRNP complex; IDA:SGD.::GO:0005688; C:U6 snRNP; IDA:SGD.
									GO:0005515; F:protein binding; IPI:IntAct.::GO:0017070; F:U6 snRNA binding; IMP:SGD.
									GO:0033962; P:cytoplasmic mRNA processing body assembly; IMP:SGD.::GO:0000398; P:nuclear mRNA splicing, via spliceosome; IPI:SGD.::GO:0000956; P:nuclear-transcribed mRNA catabolic process; TAS:SGD.::GO:0006364; P:rRNA processing; IEA:UniProtKB-KW.::GO:0008033; P:tRNA processing; IEA:UniProtKB-KW.
2	Q43582	146	LSM4_TOBAC Probable U6 snRNA-associated Sm-li...	114	2e-19	85.1	37	53	GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.::GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW.
									GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
									GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.
3	Q54KX4	177	LSM4_DICDI Probable U6 snRNA-associated Sm-li...	131	1e-17	80.9	38	47	GO:0005730; C:nucleolus; ISS:dictyBase.::GO:0005732; C:small nucleolar ribonucleoprotein complex; ISS:dictyBase.::GO:0046540; C:U4/U6 x U5 tri-snRNP complex; ISS:dictyBase.::GO:0005688; C:U6 snRNP; ISS:dictyBase.
									GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
									GO:0006402; P:mRNA catabolic process; ISS:dictyBase.::GO:0000398; P:nuclear mRNA splicing, via spliceosome; ISS:dictyBase.
4	Q9LGE6	147	LSM4_ORYSJ Probable U6 snRNA-associated Sm-li...	92	7e-16	75.1	41	58	GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.::GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW.
									GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
									GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.
5	Q9ZRU9	148	LSM4_FAGSY Probable U6 snRNA-associated Sm-li...	98	0.000000000000004	73.2	37	56	GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.::GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW.
									GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
									GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.
6	Q9Y4Z0	139	LSM4_HUMAN U6 snRNA-associated Sm-like protei...	96	0.000000000000006	72.4	40	56	GO:0005829; C:cytosol; TAS:Reactome.::GO:0005688; C:U6 snRNP; TAS:ProtInc.
									GO:0005515; F:protein binding; IPI:UniProtKB.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
									GO:0043928; P:exonucleolytic nuclear-transcribed mRNA catabolic process involved in deadenylation-dependent decay; TAS:Reactome.::GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; TAS:ProtInc.
7	Q3ZBK6	139	LSM4_BOVIN U6 snRNA-associated Sm-like protei...	96	0.000000000000006	72.4	40	56	GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.::GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW.
									GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
									GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.
8	Q9QXA5	137	LSM4_MOUSE U6 snRNA-associated Sm-like protei...	107	0.000000000000008	72	37	52	GO:0005737; C:cytoplasm; ISS:MGI.::GO:0005654; C:nucleoplasm; ISS:MGI.::GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW.
									GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
									GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.
9	O14352	121	LSM4_SCHPO Probable U6 snRNA-associated Sm-li...	92	0.00000000000007	68.9	40	57	GO:0005829; C:cytosol; IDA:PomBase.::GO:0005730; C:nucleolus; ISS:PomBase.::GO:0005732; C:small nucleolar ribonucleoprotein complex; ISS:PomBase.::GO:0005681; C:spliceosomal complex; NAS:PomBase.::GO:0046540; C:U4/U6 x U5 tri-snRNP complex; ISS:PomBase.::GO:0005688; C:U6 snRNP; ISS:PomBase.
									GO:0003723; F:RNA binding; ISS:PomBase.
									GO:0006402; P:mRNA catabolic process; ISS:PomBase.::GO:0045292; P:nuclear mRNA cis splicing, via spliceosome; ISS:PomBase.::GO:0006364; P:rRNA processing; ISS:PomBase.
10	Q19952	123	LSM4_CAEEL Probable U6 snRNA-associated Sm-li...	94	0.0000000000009	65.9	37	59	GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.::GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW.
									GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
									GO:0010171; P:body morphogenesis; IMP:WormBase.::GO:0008340; P:determination of adult lifespan; IMP:WormBase.::GO:0009792; P:embryo development ending in birth or egg hatching; IMP:WormBase.::GO:0007281; P:germ cell development; IMP:WormBase.::GO:0040011; P:locomotion; IMP:WormBase.::GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0040027; P:negative regulation of vulval development; IMP:WormBase.::GO:0040010; P:positive regulation of growth rate; IMP:WormBase.::GO:0006898; P:receptor-mediated endocytosis; IMP:WormBase.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.
11	P43321	101	SMD3_YEAST Small nuclear ribonucleoprotein Sm...	82	0.0001	43.1	29	50	GO:0000243; C:commitment complex; IPI:SGD.::GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0005685; C:U1 snRNP; IDA:SGD.::GO:0071004; C:U2-type prespliceosome; IDA:SGD.::GO:0046540; C:U4/U6 x U5 tri-snRNP complex; IDA:SGD.::GO:0005682; C:U5 snRNP; IDA:SGD.
									GO:0003729; F:mRNA binding; IPI:SGD.
									GO:0000398; P:nuclear mRNA splicing, via spliceosome; IPI:SGD.
12	Q8QZX5	122	LSM10_MOUSE U7 snRNA-associated Sm-like prote...	115	0.0002	42.7	23	51	GO:0015030; C:Cajal body; ISS:UniProtKB.::GO:0005683; C:U7 snRNP; ISS:UniProtKB.
									GO:0071208; F:histone pre-mRNA DCP binding; IDA:UniProtKB.
									GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.::GO:0000084; P:S phase of mitotic cell cycle; ISS:UniProtKB.
13	P62323	126	SMD3_XENLA Small nuclear ribonucleoprotein Sm...	84	0.0002	42.7	29	52	GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.::GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW.
									GO:0071208; F:histone pre-mRNA DCP binding; ISS:UniProtKB.
									GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.
14	P62320	126	SMD3_MOUSE Small nuclear ribonucleoprotein Sm...	84	0.0002	42.7	29	52	GO:0005737; C:cytoplasm; IDA:MGI.::GO:0005683; C:U7 snRNP; ISS:UniProtKB.
									GO:0071208; F:histone pre-mRNA DCP binding; IDA:UniProtKB.
									GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.
15	P62318	126	SMD3_HUMAN Small nuclear ribonucleoprotein Sm...	84	0.0002	42.7	29	52	GO:0071013; C:catalytic step 2 spliceosome; IDA:UniProtKB.::GO:0005829; C:cytosol; TAS:Reactome.::GO:0005654; C:nucleoplasm; TAS:Reactome.::GO:0005689; C:U12-type spliceosomal complex; IDA:UniProtKB.::GO:0005683; C:U7 snRNP; IDA:UniProtKB.
									GO:0019899; F:enzyme binding; IPI:UniProtKB.::GO:0071208; F:histone pre-mRNA DCP binding; ISS:UniProtKB.
									GO:0008334; P:histone mRNA metabolic process; TAS:Reactome.::GO:0034660; P:ncRNA metabolic process; TAS:Reactome.::GO:0000387; P:spliceosomal snRNP assembly; TAS:Reactome.::GO:0006369; P:termination of RNA polymerase II transcription; TAS:Reactome.
16	O74499	113	LSM7_SCHPO U6 snRNA-associated Sm-like protei...	78	0.0003	42	33	45	GO:0005829; C:cytosol; IDA:PomBase.::GO:0005681; C:spliceosomal complex; NAS:PomBase.::GO:0046540; C:U4/U6 x U5 tri-snRNP complex; ISS:PomBase.::GO:0005688; C:U6 snRNP; ISS:PomBase.
									GO:0003723; F:RNA binding; ISS:PomBase.
									GO:0030490; P:maturation of SSU-rRNA; ISS:PomBase.::GO:0006402; P:mRNA catabolic process; ISS:PomBase.::GO:0045292; P:nuclear mRNA cis splicing, via spliceosome; ISS:PomBase.::GO:0008033; P:tRNA processing; IEA:UniProtKB-KW.
17	Q55EX5	97	LSM5_DICDI Probable U6 snRNA-associated Sm-li...	73	0.001	40.4	34	51	GO:0005730; C:nucleolus; ISS:dictyBase.::GO:0005732; C:small nucleolar ribonucleoprotein complex; ISS:dictyBase.::GO:0046540; C:U4/U6 x U5 tri-snRNP complex; ISS:dictyBase.::GO:0005688; C:U6 snRNP; ISS:dictyBase.
									GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
									GO:0006402; P:mRNA catabolic process; ISS:dictyBase.::GO:0000398; P:nuclear mRNA splicing, via spliceosome; ISS:dictyBase.
18	Q6CPS7	80	LSM6_KLULA U6 snRNA-associated Sm-like protei...	74	0.001	40	31	61	GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.::GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW.
									GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
									GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.::GO:0006364; P:rRNA processing; IEA:UniProtKB-KW.::GO:0008033; P:tRNA processing; IEA:UniProtKB-KW.
19	Q969L4	123	LSM10_HUMAN U7 snRNA-associated Sm-like prote...	109	0.001	40.4	25	51	GO:0015030; C:Cajal body; IDA:UniProtKB.::GO:0005683; C:U7 snRNP; IDA:UniProtKB.
									GO:0071208; F:histone pre-mRNA DCP binding; ISS:UniProtKB.::GO:0005515; F:protein binding; IPI:UniProtKB.
									GO:0008334; P:histone mRNA metabolic process; TAS:Reactome.::GO:0006397; P:mRNA processing; TAS:Reactome.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.::GO:0000084; P:S phase of mitotic cell cycle; IMP:UniProtKB.::GO:0006369; P:termination of RNA polymerase II transcription; TAS:Reactome.
20	Q54TF6	117	LSM2_DICDI Probable U6 snRNA-associated Sm-li...	87	0.001	40.4	28	52	GO:0005730; C:nucleolus; ISS:dictyBase.::GO:0005732; C:small nucleolar ribonucleoprotein complex; ISS:dictyBase.::GO:0046540; C:U4/U6 x U5 tri-snRNP complex; ISS:dictyBase.::GO:0005688; C:U6 snRNP; ISS:dictyBase.
									GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
									GO:0006402; P:mRNA catabolic process; ISS:dictyBase.::GO:0000398; P:nuclear mRNA splicing, via spliceosome; ISS:dictyBase.
21	A7TK72	83	LSM6_VANPO U6 snRNA-associated Sm-like protei...	74	0.002	39.7	31	58	GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.::GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW.
									GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
									GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.::GO:0006364; P:rRNA processing; IEA:UniProtKB-KW.::GO:0008033; P:tRNA processing; IEA:UniProtKB-KW.
22	Q75BR7	85	LSM6_ASHGO U6 snRNA-associated Sm-like protei...	74	0.002	39.3	30	58	GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.::GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW.
									GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
									GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.::GO:0006364; P:rRNA processing; IEA:UniProtKB-KW.::GO:0008033; P:tRNA processing; IEA:UniProtKB-KW.
23	O94408	96	LSM2_SCHPO U6 snRNA-associated Sm-like protei...	76	0.002	39.3	25	55	GO:0005829; C:cytosol; IDA:PomBase.::GO:0005730; C:nucleolus; ISS:PomBase.::GO:0005732; C:small nucleolar ribonucleoprotein complex; ISS:PomBase.::GO:0005681; C:spliceosomal complex; NAS:PomBase.::GO:0046540; C:U4/U6 x U5 tri-snRNP complex; ISS:PomBase.::GO:0005688; C:U6 snRNP; ISS:PomBase.
									GO:0003723; F:RNA binding; ISS:PomBase.
									GO:0006402; P:mRNA catabolic process; ISS:PomBase.::GO:0045292; P:nuclear mRNA cis splicing, via spliceosome; ISS:PomBase.::GO:0006364; P:rRNA processing; ISS:PomBase.
24	P38203	95	LSM2_YEAST U6 snRNA-associated Sm-like protei...	87	0.003	38.9	29	49	GO:0000932; C:cytoplasmic mRNA processing body; IDA:SGD.::GO:0005730; C:nucleolus; IDA:SGD.::GO:0005732; C:small nucleolar ribonucleoprotein complex; IPI:SGD.::GO:0046540; C:U4/U6 x U5 tri-snRNP complex; IDA:SGD.::GO:0005688; C:U6 snRNP; IDA:SGD.
									GO:0005515; F:protein binding; IPI:IntAct.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
									GO:0000398; P:nuclear mRNA splicing, via spliceosome; IPI:SGD.::GO:0000956; P:nuclear-transcribed mRNA catabolic process; TAS:SGD.::GO:0006364; P:rRNA processing; IEA:UniProtKB-KW.::GO:0008033; P:tRNA processing; IEA:UniProtKB-KW.
25	P53905	115	LSM7_YEAST U6 snRNA-associated Sm-like protei...	72	0.003	39.3	35	53	GO:0005737; C:cytoplasm; IDA:SGD.::GO:0005730; C:nucleolus; IDA:SGD.::GO:0005732; C:small nucleolar ribonucleoprotein complex; IPI:SGD.::GO:0046540; C:U4/U6 x U5 tri-snRNP complex; IDA:SGD.::GO:0005688; C:U6 snRNP; IDA:SGD.
									GO:0005515; F:protein binding; IPI:IntAct.::GO:0003723; F:RNA binding; TAS:SGD.
									GO:0030490; P:maturation of SSU-rRNA; IMP:SGD.::GO:0000398; P:nuclear mRNA splicing, via spliceosome; IMP:SGD.::GO:0000956; P:nuclear-transcribed mRNA catabolic process; IPI:SGD.::GO:0008033; P:tRNA processing; IEA:UniProtKB-KW.
26	Q17348	136	SMD3_CAEEL Small nuclear ribonucleoprotein Sm...	84	0.004	39.3	26	54	GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.::GO:0043186; C:P granule; IDA:WormBase.
									GO:0006915; P:apoptotic process; IMP:WormBase.::GO:0009792; P:embryo development ending in birth or egg hatching; IMP:WormBase.::GO:0040007; P:growth; IMP:WormBase.::GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0040027; P:negative regulation of vulval development; IMP:WormBase.::GO:0002119; P:nematode larval development; IMP:WormBase.::GO:0040010; P:positive regulation of growth rate; IMP:WormBase.::GO:0006898; P:receptor-mediated endocytosis; IMP:WormBase.::GO:0000003; P:reproduction; IMP:WormBase.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.::GO:0032940; P:secretion by cell; IMP:WormBase.
27	Q9UUC6	97	SMD3_SCHPO Small nuclear ribonucleoprotein Sm...	84	0.009	37.7	25	50	GO:0000243; C:commitment complex; ISS:PomBase.::GO:0005685; C:U1 snRNP; IDA:PomBase.::GO:0046540; C:U4/U6 x U5 tri-snRNP complex; ISS:PomBase.
									GO:0003729; F:mRNA binding; ISS:PomBase.
									GO:0070317; P:negative regulation of G0 to G1 transition; IMP:PomBase.::GO:0045292; P:nuclear mRNA cis splicing, via spliceosome; ISS:PomBase.
28	Q6FYB6	79	LSM6_CANGA U6 snRNA-associated Sm-like protei...	74	0.027	36.2	27	57	GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.::GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW.
									GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
									GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.::GO:0006364; P:rRNA processing; IEA:UniProtKB-KW.::GO:0008033; P:tRNA processing; IEA:UniProtKB-KW.
29	Q06406	86	LSM6_YEAST U6 snRNA-associated Sm-like protei...	77	0.05	35.4	26	55	GO:0000932; C:cytoplasmic mRNA processing body; IDA:SGD.::GO:0005730; C:nucleolus; IDA:SGD.::GO:0005732; C:small nucleolar ribonucleoprotein complex; IPI:SGD.::GO:0046540; C:U4/U6 x U5 tri-snRNP complex; IDA:SGD.::GO:0005688; C:U6 snRNP; IDA:SGD.
									GO:0005515; F:protein binding; IPI:IntAct.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
									GO:0030490; P:maturation of SSU-rRNA; IMP:SGD.::GO:0000398; P:nuclear mRNA splicing, via spliceosome; IPI:SGD.::GO:0000956; P:nuclear-transcribed mRNA catabolic process; TAS:SGD.::GO:0008033; P:tRNA processing; IEA:UniProtKB-KW.
30	A6ZYX7	86	LSM6_YEAS7 U6 snRNA-associated Sm-like protei...	77	0.05	35.4	26	55	GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0005730; C:nucleolus; IEA:UniProtKB-SubCell.::GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW.
									GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
									GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.::GO:0006364; P:rRNA processing; IEA:UniProtKB-KW.::GO:0008033; P:tRNA processing; IEA:UniProtKB-KW.
31	O35900	95	LSM2_MOUSE U6 snRNA-associated Sm-like protei...	76	0.052	35.4	25	54	GO:0005681; C:spliceosomal complex; IEA:UniProtKB-KW.
									GO:0019901; F:protein kinase binding; IDA:MGI.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
									GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.

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