Fungal Genome Collection
University of Nebraska Lincoln
School of Biological Sciences and Center for Plant Science Innovation
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UniProt_SwissProt BLAST: Single locus
Species:
Saccharomyces cerevisiae S288C
Locus:
YER063W
Length:
218
Number of sequences:
5887
Description:
YER063W THO1 SGDID:S000000865, Chr V from 281710-282366, Genome Release 64-1-1, Verified ORF, "Conserved nuclear RNA-binding protein; specifically binds to transcribed chromatin in a THO- and RNA-dependent manner, genetically interacts with shuttling hnRNP NAB2; overproduction suppresses transcriptional defect caused by hpr1 mutation"
rec.SubjectHit LengthDescriptionAlign.LenE valueBit score% ident.  % pos.GO associations
1P40040    218   THO1_YEAST Protein THO1 OS=Saccharomyces cere...2182e-153     432     100     100GO:0005634; C:nucleus; IDA:SGD.
GO:0003682; F:chromatin binding; IDA:SGD.::GO:0003690; F:double-stranded DNA binding; IDA:SGD.::GO:0003723; F:RNA binding; IDA:SGD.
GO:0016973; P:poly(A)+ mRNA export from nucleus; IGI:SGD.::GO:0022618; P:ribonucleoprotein complex assembly; IMP:SGD.::GO:0006351; P:transcription, DNA-dependent; IGI:SGD.
2O74871    245   YCW3_SCHPO Uncharacterized protein C31H12.03c...2350.003     41.2     28     47GO:0005634; C:nucleus; IDA:PomBase.
GO:0003676; F:nucleic acid binding; IEA:InterPro.
GO:0016973; P:poly(A)+ mRNA export from nucleus; ISS:PomBase.
3Q00839    825   HNRPU_HUMAN Heterogeneous nuclear ribonucleop...580.31     35.4     41     57GO:0071013; C:catalytic step 2 spliceosome; IDA:UniProtKB.::GO:0009986; C:cell surface; IEA:UniProtKB-SubCell.::GO:0070937; C:CRD-mediated mRNA stability complex; IDA:UniProtKB.::GO:0030530; C:heterogeneous nuclear ribonucleoprotein complex; TAS:ProtInc.::GO:0005654; C:nucleoplasm; TAS:Reactome.
GO:0005524; F:ATP binding; IEA:UniProtKB-KW.::GO:0003677; F:DNA binding; TAS:ProtInc.::GO:0005515; F:protein binding; IPI:UniProtKB.::GO:0003723; F:RNA binding; TAS:ProtInc.
GO:0070934; P:CRD-mediated mRNA stabilization; IMP:UniProtKB.::GO:0000398; P:nuclear mRNA splicing, via spliceosome; IC:UniProtKB.
4Q6A4L1    721   S12A8_XENLA Solute carrier family 12 member 8...840.32     35.4     33     46GO:0016021; C:integral to membrane; IEA:UniProtKB-KW.
GO:0015293; F:symporter activity; IEA:UniProtKB-KW.
GO:0006813; P:potassium ion transport; IEA:UniProtKB-KW.
5A9JRJ2    1173   TCPR1_XENTR Tectonin beta-propeller repeat-co...1140.39     35.4     25     41GO:0000421; C:autophagic vacuole membrane; ISS:UniProtKB.::GO:0031410; C:cytoplasmic vesicle; IEA:UniProtKB-KW.::GO:0016021; C:integral to membrane; IEA:InterPro.::GO:0005765; C:lysosomal membrane; ISS:UniProtKB.
GO:0032266; F:phosphatidylinositol-3-phosphate binding; ISS:UniProtKB.
GO:0000046; P:autophagic vacuole fusion; ISS:UniProtKB.
6Q6GZS7    249   049L_FRG3G Putative SAP domain-containing pro...450.71     33.9     42     56
GO:0003676; F:nucleic acid binding; IEA:InterPro.
7Q8R1F6    788   HID1_MOUSE Protein hid-1 homolog OS=Mus muscu...920.72     34.3     29     46GO:0000139; C:Golgi membrane; IEA:UniProtKB-SubCell.
8Q3UMB5    935   SMCR8_MOUSE Smith-Magenis syndrome chromosoma...1400.8     34.3     28     48
9Q80YR5    991   SAFB2_MOUSE Scaffold attachment factor B2 OS=...1380.93     34.3     29     46GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0003677; F:DNA binding; IEA:UniProtKB-KW.::GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006355; P:regulation of transcription, DNA-dependent; IEA:UniProtKB-KW.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW.
10Q8IV36    788   HID1_HUMAN Protein hid-1 homolog OS=Homo sapi...921.1     33.9     27     41GO:0000139; C:Golgi membrane; IEA:UniProtKB-SubCell.::GO:0005886; C:plasma membrane; IDA:HPA.
11Q9NWH9    1034   SLTM_HUMAN SAFB-like transcription modulator ...402.6     32.7     40     60GO:0005634; C:nucleus; IDA:HPA.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006915; P:apoptotic process; IEA:UniProtKB-KW.::GO:0006355; P:regulation of transcription, DNA-dependent; IEA:UniProtKB-KW.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW.
12Q8WZ73    363   RFFL_HUMAN E3 ubiquitin-protein ligase rifify...672.7     32.3     30     57GO:0016020; C:membrane; IEA:UniProtKB-SubCell.
GO:0016874; F:ligase activity; IEA:UniProtKB-KW.::GO:0008270; F:zinc ion binding; IEA:InterPro.
GO:0006915; P:apoptotic process; IEA:UniProtKB-KW.
13Q7SA95    645   KU70_NEUCR ATP-dependent DNA helicase II subu...282.8     32.7     46     71GO:0000781; C:chromosome, telomeric region; IEA:UniProtKB-SubCell.::GO:0005958; C:DNA-dependent protein kinase-DNA ligase 4 complex; IEA:InterPro.
GO:0005524; F:ATP binding; IEA:UniProtKB-KW.::GO:0004003; F:ATP-dependent DNA helicase activity; IEA:InterPro.::GO:0003677; F:DNA binding; IEA:UniProtKB-KW.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006310; P:DNA recombination; IEA:UniProtKB-KW.::GO:0006303; P:double-strand break repair via nonhomologous end joining; IEA:InterPro.
14Q8CIN9    362   RFFL_RAT E3 ubiquitin-protein ligase rififyli...673.4     32     30     57GO:0016020; C:membrane; IEA:UniProtKB-SubCell.
GO:0016874; F:ligase activity; IEA:UniProtKB-KW.::GO:0008270; F:zinc ion binding; IEA:InterPro.
GO:0006915; P:apoptotic process; IEA:UniProtKB-KW.
15Q6ZQM0    377   RFFL_MOUSE E3 ubiquitin-protein ligase rifify...673.6     32     30     57GO:0016023; C:cytoplasmic membrane-bounded vesicle; IDA:MGI.::GO:0016020; C:membrane; IEA:UniProtKB-SubCell.::GO:0048471; C:perinuclear region of cytoplasm; IEA:UniProtKB-SubCell.
GO:0016874; F:ligase activity; IEA:UniProtKB-KW.::GO:0008270; F:zinc ion binding; IEA:InterPro.
GO:0006915; P:apoptotic process; IEA:UniProtKB-KW.::GO:0006886; P:intracellular protein transport; IDA:MGI.
16Q8CH25    1031   SLTM_MOUSE SAFB-like transcription modulator ...403.7     32.3     40     60GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006915; P:apoptotic process; IEA:UniProtKB-KW.::GO:0006355; P:regulation of transcription, DNA-dependent; IEA:UniProtKB-KW.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW.
17Q6FQG3    525   BSP1_CANGA Protein BSP1 OS=NRRL Y-65) (Yeast)...1393.9     32     27     49GO:0030479; C:actin cortical patch; IEA:UniProtKB-SubCell.::GO:0005886; C:plasma membrane; IEA:UniProtKB-SubCell.
GO:0006897; P:endocytosis; IEA:UniProtKB-KW.
18Q14151    953   SAFB2_HUMAN Scaffold attachment factor B2 OS=...328     31.2     50     66GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0003677; F:DNA binding; IEA:UniProtKB-KW.::GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0005515; F:protein binding; IPI:IntAct.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006355; P:regulation of transcription, DNA-dependent; IEA:UniProtKB-KW.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW.
records
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