rec. | Subject | Hit Length | Description | Align.Len | E value | Bit score | % ident. | % pos. | GO associations |
31 | Q3ZBL0 | 76 | RUXG_BOVIN Small nuclear ribonucleoprotein G ... | 44 | 0.013 | 37 | 43 | 55 | GO:0005681; C:spliceosomal complex; IEA:UniProtKB-KW.::GO:0005683; C:U7 snRNP; ISS:UniProtKB. | | | | | | | | | | GO:0003723; F:RNA binding; IEA:UniProtKB-KW. | | | | | | | | | | GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW. | 32 | A2BIG9 | 109 | LSMD1_DANRE LSM domain-containing protein 1 O... | 102 | 0.016 | 37.4 | 26 | 46 | | | | | | | | | | | | | | | | | | | | | | 33 | Q6GQ67 | 113 | LMD1A_XENLA LSM domain-containing protein 1-A... | 88 | 0.025 | 36.6 | 28 | 49 | | | | | | | | | | | | | | | | | | | | | | 34 | A4IGZ4 | 113 | LSMD1_XENTR LSM domain-containing protein 1 O... | 88 | 0.035 | 36.2 | 28 | 49 | | | | | | | | | | | | | | | | | | | | | | 35 | A8MWD9 | 76 | RUXGL_HUMAN Small nuclear ribonucleoprotein G... | 44 | 0.044 | 35.4 | 41 | 50 | GO:0005681; C:spliceosomal complex; IEA:UniProtKB-KW. | | | | | | | | | | GO:0003723; F:RNA binding; IEA:UniProtKB-KW. | | | | | | | | | | GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW. | 36 | Q9D2U5 | 125 | LSMD1_MOUSE LSM domain-containing protein 1 O... | 92 | 0.083 | 35.4 | 27 | 45 | GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. | | | | | | | | | | | | | | | | | | | | | 37 | Q9BRA0 | 125 | LSMD1_HUMAN LSM domain-containing protein 1 O... | 92 | 0.094 | 35.4 | 27 | 45 | GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. | | | | | | | | | | | | | | | | | | | | | 38 | Q9VXE0 | 76 | RUXG_DROME Probable small nuclear ribonucleop... | 87 | 0.2 | 33.5 | 28 | 43 | GO:0071013; C:catalytic step 2 spliceosome; IDA:FlyBase.::GO:0071011; C:precatalytic spliceosome; IDA:FlyBase.::GO:0030532; C:small nuclear ribonucleoprotein complex; IDA:FlyBase. | | | | | | | | | | GO:0003723; F:RNA binding; IEA:UniProtKB-KW. | | | | | | | | | | GO:0007052; P:mitotic spindle organization; IMP:FlyBase.::GO:0000398; P:nuclear mRNA splicing, via spliceosome; ISS:FlyBase. | 39 | Q8VC85 | 133 | LSM1_MOUSE U6 snRNA-associated Sm-like protei... | 42 | 0.25 | 34.3 | 43 | 62 | GO:0005737; C:cytoplasm; ISS:MGI.::GO:0005634; C:nucleus; ISS:MGI.::GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW. | | | | | | | | | | GO:0003723; F:RNA binding; IEA:UniProtKB-KW. | | | | | | | | | | GO:0071044; P:histone mRNA catabolic process; ISS:UniProtKB.::GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW. | 40 | Q5E9Z8 | 133 | LSM1_BOVIN U6 snRNA-associated Sm-like protei... | 42 | 0.26 | 34.3 | 43 | 62 | GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.::GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW. | | | | | | | | | | GO:0003723; F:RNA binding; IEA:UniProtKB-KW. | | | | | | | | | | GO:0071044; P:histone mRNA catabolic process; ISS:UniProtKB.::GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW. | 41 | O15116 | 133 | LSM1_HUMAN U6 snRNA-associated Sm-like protei... | 42 | 0.28 | 34.3 | 43 | 62 | GO:0005829; C:cytosol; TAS:Reactome.::GO:0005634; C:nucleus; IDA:MGI.::GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW. | | | | | | | | | | GO:0005515; F:protein binding; IPI:UniProtKB.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW. | | | | | | | | | | GO:0043928; P:exonucleolytic nuclear-transcribed mRNA catabolic process involved in deadenylation-dependent decay; TAS:Reactome.::GO:0071044; P:histone mRNA catabolic process; IMP:UniProtKB.::GO:0006397; P:mRNA processing; TAS:ProtInc.::GO:0000375; P:RNA splicing, via transesterification reactions; TAS:UniProtKB. | 42 | Q1ZXD5 | 94 | NAA38_DICDI N-alpha-acetyltransferase 38, Nat... | 35 | 0.43 | 32.7 | 49 | 66 | GO:0005730; C:nucleolus; ISS:dictyBase.::GO:0005732; C:small nucleolar ribonucleoprotein complex; ISS:dictyBase.::GO:0046540; C:U4/U6 x U5 tri-snRNP complex; ISS:dictyBase.::GO:0005688; C:U6 snRNP; ISS:dictyBase. | | | | | | | | | | GO:0003723; F:RNA binding; IEA:UniProtKB-KW. | | | | | | | | | | GO:0006402; P:mRNA catabolic process; ISS:dictyBase.::GO:0000398; P:nuclear mRNA splicing, via spliceosome; ISS:dictyBase. | 43 | Q9UK45 | 103 | LSM7_HUMAN U6 snRNA-associated Sm-like protei... | 89 | 0.46 | 33.1 | 31 | 43 | GO:0005829; C:cytosol; TAS:Reactome.::GO:0005634; C:nucleus; NAS:UniProtKB.::GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW. | | | | | | | | | | GO:0005515; F:protein binding; IPI:IntAct.::GO:0017070; F:U6 snRNA binding; NAS:UniProtKB. | | | | | | | | | | GO:0043928; P:exonucleolytic nuclear-transcribed mRNA catabolic process involved in deadenylation-dependent decay; TAS:Reactome.::GO:0000398; P:nuclear mRNA splicing, via spliceosome; NAS:UniProtKB. | 44 | P87173 | 140 | LSM1_SCHPO U6 snRNA-associated Sm-like protei... | 42 | 0.55 | 33.5 | 40 | 62 | GO:0000932; C:cytoplasmic mRNA processing body; ISS:PomBase.::GO:0005829; C:cytosol; IDA:PomBase.::GO:0005845; C:mRNA cap binding complex; ISS:PomBase.::GO:0005634; C:nucleus; IDA:PomBase. | | | | | | | | | | GO:0000339; F:RNA cap binding; ISS:PomBase. | | | | | | | | | | GO:0000290; P:deadenylation-dependent decapping of nuclear-transcribed mRNA; ISS:PomBase.::GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW. | 45 | Q9N4G9 | 77 | RUXG_CAEEL Probable small nuclear ribonucleop... | 87 | 0.58 | 32.3 | 25 | 44 | GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.::GO:0043186; C:P granule; IDA:WormBase. | | | | | | | | | | GO:0003723; F:RNA binding; IEA:UniProtKB-KW. | | | | | | | | | | GO:0006915; P:apoptotic process; IMP:WormBase.::GO:0009792; P:embryo development ending in birth or egg hatching; IMP:WormBase.::GO:0040007; P:growth; IMP:WormBase.::GO:0040011; P:locomotion; IMP:WormBase.::GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0040027; P:negative regulation of vulval development; IMP:WormBase.::GO:0002119; P:nematode larval development; IMP:WormBase.::GO:0040010; P:positive regulation of growth rate; IMP:WormBase.::GO:0006898; P:receptor-mediated endocytosis; IMP:WormBase.::GO:0000003; P:reproduction; IMP:WormBase.::GO:0016246; P:RNA interference; IMP:WormBase.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW. | 46 | Q8HUH2 | 550 | RPOA_CHLRE DNA-directed RNA polymerase subuni... | 54 | 0.6 | 34.3 | 46 | 63 | GO:0009507; C:chloroplast; IEA:UniProtKB-SubCell. | | | | | | | | | | GO:0003677; F:DNA binding; IEA:InterPro.::GO:0003899; F:DNA-directed RNA polymerase activity; IEA:UniProtKB-KW.::GO:0046983; F:protein dimerization activity; IEA:InterPro. | | | | | | | | | | | 47 | Q2M1D1 | 608 | UFSP2_DROPS Probable Ufm1-specific protease 2... | 41 | 0.98 | 33.9 | 46 | 66 | | | | | | | | | | | GO:0019783; F:small conjugating protein-specific protease activity; ISS:UniProtKB.::GO:0016790; F:thiolester hydrolase activity; ISS:UniProtKB. | | | | | | | | | | GO:0006508; P:proteolysis; IEA:UniProtKB-KW. | 48 | Q9D8M7 | 497 | PHF10_MOUSE PHD finger protein 10 OS=Mus musc... | 92 | 1.1 | 33.5 | 30 | 51 | GO:0071564; C:npBAF complex; IDA:UniProtKB. | | | | | | | | | | GO:0005515; F:protein binding; IPI:UniProtKB.::GO:0008270; F:zinc ion binding; IEA:InterPro. | | | | | | | | | | GO:0007399; P:nervous system development; IMP:UniProtKB.::GO:0006355; P:regulation of transcription, DNA-dependent; IEA:UniProtKB-KW.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW. | 49 | Q4V7A6 | 497 | PHF10_RAT PHD finger protein 10 OS=Rattus nor... | 92 | 1.1 | 33.5 | 30 | 51 | GO:0071564; C:npBAF complex; ISS:UniProtKB. | | | | | | | | | | GO:0008270; F:zinc ion binding; IEA:InterPro. | | | | | | | | | | GO:0007399; P:nervous system development; IEA:UniProtKB-KW.::GO:0006355; P:regulation of transcription, DNA-dependent; IEA:UniProtKB-KW.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW. | 50 | Q54HH8 | 257 | SMDL_DICDI Small nuclear ribonucleoprotein Sm... | 68 | 1.3 | 33.1 | 28 | 51 | GO:0030532; C:small nuclear ribonucleoprotein complex; ISS:UniProtKB. | | | | | | | | | | | | | | | | | | | | GO:0000398; P:nuclear mRNA splicing, via spliceosome; ISS:UniProtKB. | 51 | P62311 | 102 | LSM3_MOUSE U6 snRNA-associated Sm-like protei... | 47 | 1.3 | 31.6 | 32 | 62 | | | | | | | | | | | GO:0003723; F:RNA binding; IEA:UniProtKB-KW. | | | | | | | | | | GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW. | 52 | P62310 | 102 | LSM3_HUMAN U6 snRNA-associated Sm-like protei... | 47 | 1.3 | 31.6 | 32 | 62 | GO:0071013; C:catalytic step 2 spliceosome; IDA:UniProtKB.::GO:0005829; C:cytosol; TAS:Reactome. | | | | | | | | | | GO:0005515; F:protein binding; IPI:IntAct.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW. | | | | | | | | | | GO:0043928; P:exonucleolytic nuclear-transcribed mRNA catabolic process involved in deadenylation-dependent decay; TAS:Reactome.::GO:0000398; P:nuclear mRNA splicing, via spliceosome; IC:UniProtKB. | 53 | Q32PE9 | 102 | LSM3_BOVIN U6 snRNA-associated Sm-like protei... | 47 | 1.3 | 31.6 | 32 | 62 | | | | | | | | | | | GO:0003723; F:RNA binding; IEA:UniProtKB-KW. | | | | | | | | | | GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW. | 54 | Q9CQQ8 | 103 | LSM7_MOUSE U6 snRNA-associated Sm-like protei... | 89 | 1.3 | 31.6 | 30 | 43 | GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.::GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW. | | | | | | | | | | GO:0003723; F:RNA binding; IEA:UniProtKB-KW. | | | | | | | | | | GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW. | 55 | C6A1T2 | 76 | RUXX_THESM Putative snRNP Sm-like protein OS=... | 66 | 1.4 | 31.2 | 32 | 53 | GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW. | | | | | | | | | | | | | | | | | | | | | 56 | P57743 | 89 | LSM3_YEAST U6 snRNA-associated Sm-like protei... | 35 | 1.5 | 31.2 | 34 | 63 | GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0005730; C:nucleolus; IDA:SGD.::GO:0005732; C:small nucleolar ribonucleoprotein complex; IPI:SGD.::GO:0046540; C:U4/U6 x U5 tri-snRNP complex; IDA:SGD.::GO:0005688; C:U6 snRNP; IDA:SGD. | | | | | | | | | | GO:0005515; F:protein binding; IPI:IntAct.::GO:0003723; F:RNA binding; TAS:SGD. | | | | | | | | | | GO:0000398; P:nuclear mRNA splicing, via spliceosome; IPI:SGD.::GO:0000956; P:nuclear-transcribed mRNA catabolic process; TAS:SGD.::GO:0006364; P:rRNA processing; IEA:UniProtKB-KW.::GO:0008033; P:tRNA processing; IEA:UniProtKB-KW. | 57 | Q85443 | 312 | NSP12_RDVF Non-structural protein 12A OS=Rice... | 39 | 1.6 | 32.7 | 46 | 69 | GO:0030430; C:host cell cytoplasm; IEA:UniProtKB-SubCell. | | | | | | | | | | | | | | | | | | | | | 58 | A6S5C9 | 85 | LSM6_BOTFB U6 snRNA-associated Sm-like protei... | 45 | 2 | 30.8 | 38 | 60 | GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.::GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW. | | | | | | | | | | GO:0003723; F:RNA binding; IEA:UniProtKB-KW. | | | | | | | | | | GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.::GO:0006364; P:rRNA processing; IEA:UniProtKB-KW.::GO:0008033; P:tRNA processing; IEA:UniProtKB-KW. | 59 | Q0UWI9 | 89 | LSM6_PHANO U6 snRNA-associated Sm-like protei... | 56 | 2.3 | 30.8 | 32 | 45 | GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.::GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW. | | | | | | | | | | GO:0003723; F:RNA binding; IEA:UniProtKB-KW. | | | | | | | | | | GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.::GO:0006364; P:rRNA processing; IEA:UniProtKB-KW.::GO:0008033; P:tRNA processing; IEA:UniProtKB-KW. | 60 | Q8WUB8 | 498 | PHF10_HUMAN PHD finger protein 10 OS=Homo sap... | 92 | 2.3 | 32.3 | 30 | 50 | GO:0071564; C:npBAF complex; ISS:UniProtKB. | | | | | | | | | | GO:0008270; F:zinc ion binding; IEA:InterPro. | | | | | | | | | | GO:0007399; P:nervous system development; IEA:UniProtKB-KW.::GO:0006355; P:regulation of transcription, DNA-dependent; IEA:UniProtKB-KW.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW. | 61 | Q6BR90 | 85 | LSM6_DEBHA U6 snRNA-associated Sm-like protei... | 39 | 2.9 | 30.4 | 36 | 59 | GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.::GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW. | | | | | | | | | | GO:0003723; F:RNA binding; IEA:UniProtKB-KW. | | | | | | | | | | GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.::GO:0006364; P:rRNA processing; IEA:UniProtKB-KW.::GO:0008033; P:tRNA processing; IEA:UniProtKB-KW. |