Fungal Genome Collection
University of Nebraska Lincoln
School of Biological Sciences and Center for Plant Science Innovation
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UniProt_SwissProt BLAST: Single locus
Species:
Saccharomyces cerevisiae S288C
Locus:
YER029C
Length:
196
Number of sequences:
5887
Description:
YER029C SMB1 SGDID:S000000831, Chr V from 213177-212587, Genome Release 64-1-1, reverse complement, Verified ORF, "Core Sm protein Sm B; part of heteroheptameric complex (with Smd1p, Smd2p, Smd3p, Sme1p, Smx3p, and Smx2p) that is part of the spliceosomal U1, U2, U4, and U5 snRNPs; homolog of human Sm B and Sm B'"
rec.SubjectHit LengthDescriptionAlign.LenE valueBit score% ident.  % pos.GO associations
1P40018    196   RSMB_YEAST Small nuclear ribonucleoprotein-as...1964e-141     398     100     100GO:0005685; C:U1 snRNP; IDA:SGD.::GO:0071004; C:U2-type prespliceosome; IDA:SGD.::GO:0046540; C:U4/U6 x U5 tri-snRNP complex; IDA:SGD.::GO:0005682; C:U5 snRNP; IDA:SGD.
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0000398; P:nuclear mRNA splicing, via spliceosome; IPI:SGD.
2Q9N1Q0    240   RSMB_MACEU Small nuclear ribonucleoprotein-as...982e-18     84.3     46     63GO:0005683; C:U7 snRNP; ISS:UniProtKB.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.
3Q58DW4    240   RSMB_BOVIN Small nuclear ribonucleoprotein-as...982e-18     84.3     46     63GO:0005681; C:spliceosomal complex; IEA:UniProtKB-KW.::GO:0005683; C:U7 snRNP; ISS:UniProtKB.
GO:0042802; F:identical protein binding; ISS:AgBase.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.
4P14678    240   RSMB_HUMAN Small nuclear ribonucleoprotein-as...982e-18     84     46     63GO:0071013; C:catalytic step 2 spliceosome; IDA:UniProtKB.::GO:0005829; C:cytosol; TAS:Reactome.::GO:0005654; C:nucleoplasm; TAS:Reactome.::GO:0005689; C:U12-type spliceosomal complex; IDA:UniProtKB.::GO:0005683; C:U7 snRNP; IDA:UniProtKB.
GO:0005515; F:protein binding; IPI:UniProtKB.
GO:0008334; P:histone mRNA metabolic process; TAS:Reactome.::GO:0034660; P:ncRNA metabolic process; TAS:Reactome.::GO:0000387; P:spliceosomal snRNP assembly; TAS:Reactome.::GO:0006369; P:termination of RNA polymerase II transcription; TAS:Reactome.
5Q9TU67    240   RSMB_ERIEU Small nuclear ribonucleoprotein-as...982e-18     84     46     63GO:0005681; C:spliceosomal complex; IEA:UniProtKB-KW.::GO:0005683; C:U7 snRNP; ISS:UniProtKB.
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.
6Q9PV94    240   RSMB_CHICK Small nuclear ribonucleoprotein-as...982e-18     84     47     63GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.::GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW.
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
7P27048    231   RSMB_MOUSE Small nuclear ribonucleoprotein-as...983e-18     83.6     46     63GO:0005737; C:cytoplasm; IDA:MGI.::GO:0071204; C:histone pre-mRNA 3'end processing complex; IDA:UniProtKB.::GO:0005683; C:U7 snRNP; ISS:UniProtKB.
GO:0071208; F:histone pre-mRNA DCP binding; IDA:UniProtKB.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.
8Q17QN3    240   RSMN_BOVIN Small nuclear ribonucleoprotein-as...985e-18     82.8     45     63GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.::GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW.
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
9P63164    240   RSMN_RAT Small nuclear ribonucleoprotein-asso...988e-18     82.4     45     63GO:0005685; C:U1 snRNP; IDA:RGD.::GO:0005686; C:U2 snRNP; IDA:RGD.
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0009725; P:response to hormone stimulus; IEP:RGD.
10Q5R6I0    240   RSMN_PONAB Small nuclear ribonucleoprotein-as...988e-18     82.4     45     63GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.::GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW.
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
11P63163    240   RSMN_MOUSE Small nuclear ribonucleoprotein-as...988e-18     82.4     45     63GO:0005634; C:nucleus; TAS:MGI.::GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW.
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
12Q60HD3    240   RSMN_MACFA Small nuclear ribonucleoprotein-as...988e-18     82.4     45     63GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.::GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW.
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
13P63162    240   RSMN_HUMAN Small nuclear ribonucleoprotein-as...988e-18     82.4     45     63GO:0030532; C:small nuclear ribonucleoprotein complex; TAS:UniProtKB.::GO:0005681; C:spliceosomal complex; TAS:UniProtKB.
GO:0005515; F:protein binding; IPI:IntAct.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0008380; P:RNA splicing; TAS:UniProtKB.
14Q9TU66    240   RSMB_MONDO Small nuclear ribonucleoprotein-as...983e-17     80.5     45     62GO:0005683; C:U7 snRNP; ISS:UniProtKB.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.
15Q10163    147   RSMB_SCHPO Small nuclear ribonucleoprotein-as...1300.000000000000004     73.2     33     55GO:0005829; C:cytosol; IDA:PomBase.::GO:0005681; C:spliceosomal complex; IC:PomBase.::GO:0005685; C:U1 snRNP; IDA:PomBase.::GO:0046540; C:U4/U6 x U5 tri-snRNP complex; ISS:PomBase.
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0000395; P:nuclear mRNA 5'-splice site recognition; IC:PomBase.
16P91918    160   RSMB_CAEEL Probable small nuclear ribonucleop...990.000000000000005     73.6     36     63GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.::GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW.
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0009792; P:embryo development ending in birth or egg hatching; IMP:WormBase.::GO:0040007; P:growth; IMP:WormBase.::GO:0002009; P:morphogenesis of an epithelium; IMP:WormBase.::GO:0040027; P:negative regulation of vulval development; IMP:WormBase.::GO:0002119; P:nematode larval development; IMP:WormBase.::GO:0006898; P:receptor-mediated endocytosis; IMP:WormBase.::GO:0000003; P:reproduction; IMP:WormBase.
17Q55A45    274   RSMB_DICDI Small nuclear ribonucleoprotein-as...930.0000000000003     69.7     40     60GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.::GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW.
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
18Q05856    199   RSMB_DROME Small nuclear ribonucleoprotein-as...940.0000000000005     68.2     39     62GO:0015030; C:Cajal body; IDA:FlyBase.::GO:0071013; C:catalytic step 2 spliceosome; IDA:FlyBase.::GO:0045495; C:pole plasm; IDA:FlyBase.::GO:0071011; C:precatalytic spliceosome; IDA:FlyBase.::GO:0030532; C:small nuclear ribonucleoprotein complex; ISS:FlyBase.
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0007281; P:germ cell development; IMP:FlyBase.::GO:0008406; P:gonad development; IMP:FlyBase.::GO:0007052; P:mitotic spindle organization; IMP:FlyBase.::GO:0000398; P:nuclear mRNA splicing, via spliceosome; ISS:FlyBase.
19P17136    214   RSMB_RAT Small nuclear ribonucleoprotein-asso...770.000000000003     65.9     48     64GO:0005683; C:U7 snRNP; ISS:UniProtKB.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.
20Q5RCP3    96   NAA38_PONAB N-alpha-acetyltransferase 38, Nat...840.000002     47.8     33     51GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.::GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW.
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.
21Q6ZWM4    96   NAA38_MOUSE N-alpha-acetyltransferase 38, Nat...840.000002     47.8     33     51GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.::GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW.
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.
22O95777    96   NAA38_HUMAN N-alpha-acetyltransferase 38, Nat...840.000002     47.8     33     51GO:0005634; C:nucleus; NAS:UniProtKB.::GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW.
GO:0005515; F:protein binding; IPI:IntAct.::GO:0017070; F:U6 snRNA binding; NAS:UniProtKB.
GO:0000398; P:nuclear mRNA splicing, via spliceosome; NAS:UniProtKB.
23Q3ZCE0    96   NAA38_BOVIN N-alpha-acetyltransferase 38, Nat...840.000002     47.8     33     51GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.::GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW.
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.
24P47017    172   LSM1_YEAST Sm-like protein LSm1 OS=Saccharomy...1450.0004     43.1     26     48GO:0000932; C:cytoplasmic mRNA processing body; IDA:SGD.::GO:0005845; C:mRNA cap binding complex; IPI:SGD.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0005515; F:protein binding; IPI:IntAct.::GO:0000339; F:RNA cap binding; IGI:SGD.
GO:0000290; P:deadenylation-dependent decapping of nuclear-transcribed mRNA; IGI:SGD.::GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.
25P53905    115   LSM7_YEAST U6 snRNA-associated Sm-like protei...830.0005     41.6     35     52GO:0005737; C:cytoplasm; IDA:SGD.::GO:0005730; C:nucleolus; IDA:SGD.::GO:0005732; C:small nucleolar ribonucleoprotein complex; IPI:SGD.::GO:0046540; C:U4/U6 x U5 tri-snRNP complex; IDA:SGD.::GO:0005688; C:U6 snRNP; IDA:SGD.
GO:0005515; F:protein binding; IPI:IntAct.::GO:0003723; F:RNA binding; TAS:SGD.
GO:0030490; P:maturation of SSU-rRNA; IMP:SGD.::GO:0000398; P:nuclear mRNA splicing, via spliceosome; IMP:SGD.::GO:0000956; P:nuclear-transcribed mRNA catabolic process; IPI:SGD.::GO:0008033; P:tRNA processing; IEA:UniProtKB-KW.
26O74483    94   LSM8_SCHPO U6 snRNA-associated Sm-like protei...810.0009     40.4     30     49GO:0030532; C:small nuclear ribonucleoprotein complex; ISS:PomBase.::GO:0005681; C:spliceosomal complex; NAS:PomBase.
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0045292; P:nuclear mRNA cis splicing, via spliceosome; ISS:PomBase.::GO:0006364; P:rRNA processing; ISS:PomBase.
27Q54W83    129   LSM1_DICDI Probable U6 snRNA-associated Sm-li...420.007     38.5     45     67GO:0000932; C:cytoplasmic mRNA processing body; ISS:dictyBase.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0000339; F:RNA cap binding; ISS:dictyBase.
GO:0006402; P:mRNA catabolic process; ISS:dictyBase.::GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.
28Q6NU60    111   LMD1B_XENLA LSM domain-containing protein 1-B...880.012     37.7     31     45
29P62309    76   RUXG_MOUSE Small nuclear ribonucleoprotein G ...440.013     37     43     55GO:0005683; C:U7 snRNP; ISS:UniProtKB.
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.
30P62308    76   RUXG_HUMAN Small nuclear ribonucleoprotein G ...440.013     37     43     55GO:0071013; C:catalytic step 2 spliceosome; IDA:UniProtKB.::GO:0005829; C:cytosol; TAS:Reactome.::GO:0005654; C:nucleoplasm; TAS:Reactome.::GO:0005689; C:U12-type spliceosomal complex; IDA:UniProtKB.::GO:0005683; C:U7 snRNP; IDA:UniProtKB.
GO:0005515; F:protein binding; IPI:IntAct.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0008334; P:histone mRNA metabolic process; TAS:Reactome.::GO:0034660; P:ncRNA metabolic process; TAS:Reactome.::GO:0000245; P:spliceosomal complex assembly; NAS:UniProtKB.::GO:0000387; P:spliceosomal snRNP assembly; TAS:Reactome.::GO:0006369; P:termination of RNA polymerase II transcription; TAS:Reactome.
31Q3ZBL0    76   RUXG_BOVIN Small nuclear ribonucleoprotein G ...440.013     37     43     55GO:0005681; C:spliceosomal complex; IEA:UniProtKB-KW.::GO:0005683; C:U7 snRNP; ISS:UniProtKB.
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.
records
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