Fungal Genome Collection
University of Nebraska Lincoln
School of Biological Sciences and Center for Plant Science Innovation
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UniProt_SwissProt BLAST: Single locus
Species:
Saccharomyces cerevisiae S288C
Locus:
YEL037C
Length:
398
Number of sequences:
5887
Description:
YEL037C RAD23 SGDID:S000000763, Chr V from 82603-81407, Genome Release 64-1-1, reverse complement, Verified ORF, "Protein with ubiquitin-like N terminus, subunit of Nuclear Excision Repair Factor 2 (NEF2) with Rad4p that binds damaged DNA; enhances protein deglycosylation activity of Png1p; also involved, with Rad4p, in ubiquitylated protein turnover"
rec.SubjectHit LengthDescriptionAlign.LenE valueBit score% ident.  % pos.GO associations
1P32628    398   RAD23_YEAST UV excision repair protein RAD23 ...3980     806     100     100GO:0005739; C:mitochondrion; IDA:SGD.::GO:0000111; C:nucleotide-excision repair factor 2 complex; IDA:SGD.::GO:0000502; C:proteasome complex; IMP:SGD.
GO:0003684; F:damaged DNA binding; IDA:SGD.::GO:0030674; F:protein binding, bridging; IPI:SGD.::GO:0043130; F:ubiquitin binding; IDA:SGD.
GO:0030433; P:ER-associated protein catabolic process; IMP:SGD.::GO:0000715; P:nucleotide-excision repair, DNA damage recognition; TAS:SGD.::GO:0006517; P:protein deglycosylation; IDA:SGD.
2O74803    368   RHP23_SCHPO UV excision repair protein rhp23 ...4023e-59     202     39     53GO:0005829; C:cytosol; IDA:PomBase.::GO:0005635; C:nuclear envelope; IDA:PomBase.
GO:0003684; F:damaged DNA binding; ISS:PomBase.::GO:0031593; F:polyubiquitin binding; TAS:PomBase.
GO:0030433; P:ER-associated protein catabolic process; ISS:PomBase.::GO:0042177; P:negative regulation of protein catabolic process; IMP:PomBase.::GO:0006289; P:nucleotide-excision repair; IMP:PomBase.::GO:0016567; P:protein ubiquitination; IMP:PomBase.::GO:0007346; P:regulation of mitotic cell cycle; TAS:PomBase.
3Q84L33    371   RD23A_ARATH Putative DNA repair protein RAD23...4143e-43     160     32     48GO:0005634; C:nucleus; IDA:TAIR.
GO:0003684; F:damaged DNA binding; IEA:InterPro.::GO:0070628; F:proteasome binding; IDA:TAIR.::GO:0043130; F:ubiquitin binding; IDA:TAIR.
GO:0006289; P:nucleotide-excision repair; IEA:InterPro.::GO:0043161; P:proteasomal ubiquitin-dependent protein catabolic process; IEA:InterPro.
4P54728    416   RD23B_MOUSE UV excision repair protein RAD23 ...4472e-40     153     30     43GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0000502; C:proteasome complex; IEA:UniProtKB-KW.::GO:0071942; C:XPC complex; ISS:UniProtKB.
GO:0003684; F:damaged DNA binding; IEA:InterPro.
GO:0043161; P:proteasomal ubiquitin-dependent protein catabolic process; IEA:InterPro.::GO:0007283; P:spermatogenesis; IMP:MGI.
5P54726    363   RD23A_MOUSE UV excision repair protein RAD23 ...4223e-39     149     33     46GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.::GO:0000502; C:proteasome complex; IEA:UniProtKB-KW.
GO:0003684; F:damaged DNA binding; IEA:InterPro.
GO:0043161; P:proteasomal ubiquitin-dependent protein catabolic process; IEA:InterPro.
6A3KMV2    362   RD23A_BOVIN UV excision repair protein RAD23 ...4234e-39     149     33     45GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.::GO:0000502; C:proteasome complex; IEA:UniProtKB-KW.
GO:0003684; F:damaged DNA binding; IEA:InterPro.
GO:0043161; P:proteasomal ubiquitin-dependent protein catabolic process; IEA:InterPro.
7P54727    409   RD23B_HUMAN UV excision repair protein RAD23 ...4413e-38     147     30     44GO:0005737; C:cytoplasm; IDA:HPA.::GO:0005654; C:nucleoplasm; TAS:Reactome.::GO:0000502; C:proteasome complex; IEA:UniProtKB-KW.::GO:0071942; C:XPC complex; IDA:UniProtKB.
GO:0003684; F:damaged DNA binding; IEA:InterPro.::GO:0031593; F:polyubiquitin binding; IDA:UniProtKB.::GO:0003697; F:single-stranded DNA binding; TAS:ProtInc.
GO:0000715; P:nucleotide-excision repair, DNA damage recognition; IDA:UniProtKB.::GO:0000718; P:nucleotide-excision repair, DNA damage removal; TAS:Reactome.::GO:0043161; P:proteasomal ubiquitin-dependent protein catabolic process; IEA:InterPro.::GO:0032434; P:regulation of proteasomal ubiquitin-dependent protein catabolic process; IDA:UniProtKB.
8P54725    363   RD23A_HUMAN UV excision repair protein RAD23 ...4223e-38     146     32     46GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.::GO:0000502; C:proteasome complex; IEA:UniProtKB-KW.
GO:0003684; F:damaged DNA binding; IEA:InterPro.::GO:0031593; F:polyubiquitin binding; IDA:UniProtKB.::GO:0003697; F:single-stranded DNA binding; TAS:ProtInc.
GO:0044419; P:interspecies interaction between organisms; IEA:UniProtKB-KW.::GO:0006289; P:nucleotide-excision repair; IDA:UniProtKB.::GO:0045070; P:positive regulation of viral genome replication; IMP:UniProtKB.::GO:0043161; P:proteasomal ubiquitin-dependent protein catabolic process; IEA:InterPro.::GO:0032434; P:regulation of proteasomal ubiquitin-dependent protein catabolic process; IDA:UniProtKB.
9Q4KMA2    415   RD23B_RAT UV excision repair protein RAD23 ho...4466e-38     146     31     43GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0000502; C:proteasome complex; IEA:UniProtKB-KW.::GO:0071942; C:XPC complex; ISS:UniProtKB.
GO:0003684; F:damaged DNA binding; IEA:InterPro.
GO:0043161; P:proteasomal ubiquitin-dependent protein catabolic process; IEA:InterPro.
10Q84L32    368   RD23B_ARATH Putative DNA repair protein RAD23...4066e-38     145     30     47GO:0005634; C:nucleus; IDA:TAIR.
GO:0003684; F:damaged DNA binding; IEA:InterPro.::GO:0070628; F:proteasome binding; IDA:TAIR.::GO:0043130; F:ubiquitin binding; IDA:TAIR.
GO:0006289; P:nucleotide-excision repair; IEA:InterPro.::GO:0043161; P:proteasomal ubiquitin-dependent protein catabolic process; IEA:InterPro.
11Q40742    392   RAD23_ORYSJ Probable DNA repair protein RAD23...4236e-38     146     30     46GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0003684; F:damaged DNA binding; IEA:InterPro.
GO:0006289; P:nucleotide-excision repair; IEA:InterPro.::GO:0043161; P:proteasomal ubiquitin-dependent protein catabolic process; IEA:InterPro.
12Q84L31    419   RD23C_ARATH Putative DNA repair protein RAD23...4562e-36     142     30     45GO:0005634; C:nucleus; IDA:TAIR.
GO:0003684; F:damaged DNA binding; IEA:InterPro.::GO:0070628; F:proteasome binding; IDA:TAIR.::GO:0043130; F:ubiquitin binding; IDA:TAIR.
GO:0006289; P:nucleotide-excision repair; IEA:InterPro.::GO:0043161; P:proteasomal ubiquitin-dependent protein catabolic process; IEA:InterPro.
13Q29RK4    408   RD23B_BOVIN UV excision repair protein RAD23 ...4382e-35     139     29     42GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0000502; C:proteasome complex; IEA:UniProtKB-KW.::GO:0071942; C:XPC complex; ISS:UniProtKB.
GO:0003684; F:damaged DNA binding; IEA:InterPro.
GO:0043161; P:proteasomal ubiquitin-dependent protein catabolic process; IEA:InterPro.
14Q84L30    378   RD23D_ARATH Putative DNA repair protein RAD23...4001e-33     134     31     48GO:0005829; C:cytosol; IDA:TAIR.::GO:0005634; C:nucleus; IDA:TAIR.
GO:0003684; F:damaged DNA binding; IEA:InterPro.::GO:0070628; F:proteasome binding; IDA:TAIR.::GO:0043130; F:ubiquitin binding; IDA:TAIR.
GO:0006289; P:nucleotide-excision repair; IEA:InterPro.::GO:0043161; P:proteasomal ubiquitin-dependent protein catabolic process; IEA:InterPro.::GO:0009409; P:response to cold; IEP:TAIR.
15Q54LV1    342   RAD23_DICDI UV excision repair protein RAD23 ...2540.00000000000001     78.2     27     38GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.::GO:0045335; C:phagocytic vesicle; IDA:dictyBase.
GO:0003684; F:damaged DNA binding; IEA:InterPro.
GO:0006289; P:nucleotide-excision repair; IEA:InterPro.::GO:0043161; P:proteasomal ubiquitin-dependent protein catabolic process; IEA:InterPro.
16Q99NB8    596   UBQL4_MOUSE Ubiquilin-4 OS=Mus musculus (Mous...870.000003     53.1     32     61GO:0005829; C:cytosol; IDA:MGI.::GO:0005789; C:endoplasmic reticulum membrane; IDA:MGI.::GO:0005634; C:nucleus; ISS:UniProtKB.::GO:0048471; C:perinuclear region of cytoplasm; IEA:UniProtKB-SubCell.
GO:0031593; F:polyubiquitin binding; ISS:UniProtKB.
GO:0032434; P:regulation of proteasomal ubiquitin-dependent protein catabolic process; ISS:UniProtKB.
17Q8C5U9    658   UBQL3_MOUSE Ubiquilin-3 OS=Mus musculus (Mous...890.000007     51.6     27     60
18Q9H347    655   UBQL3_HUMAN Ubiquilin-3 OS=Homo sapiens (Huma...980.0003     46.6     28     54
19P48510    373   DSK2_YEAST Ubiquitin domain-containing protei...660.0003     46.2     32     61GO:0005635; C:nuclear envelope; IGI:GOC.
GO:0030674; F:protein binding, bridging; IMP:SGD.
GO:0030433; P:ER-associated protein catabolic process; IMP:SGD.::GO:0007103; P:spindle pole body duplication in nuclear envelope; IGI:SGD.
20Q9NRR5    601   UBQL4_HUMAN Ubiquilin-4 OS=Homo sapiens (Huma...940.0003     46.6     30     56GO:0005829; C:cytosol; ISS:UniProtKB.::GO:0005789; C:endoplasmic reticulum membrane; ISS:UniProtKB.::GO:0005634; C:nucleus; IDA:UniProtKB.::GO:0048471; C:perinuclear region of cytoplasm; IEA:UniProtKB-SubCell.
GO:0031593; F:polyubiquitin binding; IDA:UniProtKB.
GO:0032434; P:regulation of proteasomal ubiquitin-dependent protein catabolic process; IMP:UniProtKB.
21Q9NIF3    523   UBQL_DICDI Ubiquilin OS=Dictyostelium discoid...680.0006     45.4     32     56GO:0045335; C:phagocytic vesicle; IDA:dictyBase.
GO:0007275; P:multicellular organismal development; IEA:UniProtKB-KW.
22Q9UHD9    624   UBQL2_HUMAN Ubiquilin-2 OS=Homo sapiens (Huma...1120.003     43.5     27     54GO:0005737; C:cytoplasm; IDA:HPA.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.::GO:0005886; C:plasma membrane; IDA:HPA.
GO:0005515; F:protein binding; IPI:IntAct.
GO:0008219; P:cell death; IEA:UniProtKB-KW.
23P46575    129   RL40_EIMBO Ubiquitin-60S ribosomal protein L4...530.009     39.7     36     58GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.::GO:0005840; C:ribosome; IEA:UniProtKB-KW.
GO:0003735; F:structural constituent of ribosome; IEA:InterPro.
GO:0006412; P:translation; IEA:InterPro.
24Q54L35    80   NED82_DICDI NEDD8-like protein 2 OS=Dictyoste...590.01     38.9     31     59
25Q10169    354   DSK2_SCHPO Deubiquitination-protection protei...670.013     40.8     27     58GO:0005829; C:cytosol; IDA:PomBase.::GO:0005634; C:nucleus; IDA:PomBase.
GO:0031593; F:polyubiquitin binding; IDA:PomBase.
GO:0033554; P:cellular response to stress; NAS:PomBase.::GO:0030433; P:ER-associated protein catabolic process; ISS:PomBase.::GO:0042177; P:negative regulation of protein catabolic process; IMP:PomBase.::GO:0030474; P:spindle pole body duplication; ISS:PomBase.
26Q9JJP9    582   UBQL1_RAT Ubiquilin-1 OS=Rattus norvegicus (R...970.013     41.2     28     51GO:0005783; C:endoplasmic reticulum; ISS:HGNC.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.::GO:0048471; C:perinuclear region of cytoplasm; ISS:HGNC.::GO:0000502; C:proteasome complex; IEA:UniProtKB-KW.
GO:0019904; F:protein domain specific binding; IPI:RGD.
GO:0006915; P:apoptotic process; ISS:HGNC.::GO:0031396; P:regulation of protein ubiquitination; ISS:HGNC.::GO:0001666; P:response to hypoxia; ISS:HGNC.
27P18101    128   RL40_DROME Ubiquitin-60S ribosomal protein L4...530.015     38.9     34     58GO:0022625; C:cytosolic large ribosomal subunit; IDA:FlyBase.::GO:0005875; C:microtubule associated complex; IDA:FlyBase.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0003735; F:structural constituent of ribosome; TAS:FlyBase.
GO:0006412; P:translation; TAS:FlyBase.
28P0C276    128   RL40_SHEEP Ubiquitin-60S ribosomal protein L4...530.017     38.9     34     58GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.::GO:0005840; C:ribosome; IEA:UniProtKB-KW.
GO:0003735; F:structural constituent of ribosome; IEA:InterPro.
GO:0006412; P:translation; IEA:InterPro.
29P62986    128   RL40_RAT Ubiquitin-60S ribosomal protein L40 ...530.017     38.9     34     58GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.::GO:0005840; C:ribosome; IEA:UniProtKB-KW.
GO:0003735; F:structural constituent of ribosome; IEA:InterPro.
GO:0006412; P:translation; IEA:InterPro.
30P0C275    128   RL40_PONPY Ubiquitin-60S ribosomal protein L4...530.017     38.9     34     58GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.::GO:0005840; C:ribosome; IEA:UniProtKB-KW.
GO:0003735; F:structural constituent of ribosome; IEA:InterPro.
GO:0006412; P:translation; IEA:InterPro.
31P63053    128   RL40_PIG Ubiquitin-60S ribosomal protein L40 ...530.017     38.9     34     58GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0003735; F:structural constituent of ribosome; IEA:InterPro.
GO:0006412; P:translation; IEA:InterPro.
records
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