Fungal Genome Collection
University of Nebraska Lincoln
School of Biological Sciences and Center for Plant Science Innovation
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UniProt_SwissProt BLAST: Single locus
Species:
Saccharomyces cerevisiae S288C
Locus:
YDR496C
Length:
656
Number of sequences:
5887
Description:
YDR496C PUF6 SGDID:S000002904, Chr IV from 1443403-1441433, Genome Release 64-1-1, reverse complement, Verified ORF, "Pumilio-homology domain protein that binds the 3' UTR of ASH1 mRNA and represses its translation, resulting in proper asymmetric localization of ASH1 mRNA; also co-sediments with the 60S ribosomal subunit and is required for its biogenesis"
rec.SubjectHit LengthDescriptionAlign.LenE valueBit score% ident.  % pos.GO associations
1Q04373    656   PUF6_YEAST Pumilio homology domain family mem...6560     1338     100     100GO:0005934; C:cellular bud tip; IEA:UniProtKB-SubCell.::GO:0015934; C:large ribosomal subunit; IDA:SGD.::GO:0005730; C:nucleolus; IDA:SGD.
GO:0003730; F:mRNA 3'-UTR binding; IDA:SGD.::GO:0000900; F:translation repressor activity, nucleic acid binding; IDA:SGD.
GO:0042273; P:ribosomal large subunit biogenesis; IMP:SGD.::GO:0006810; P:transport; IEA:UniProtKB-KW.
2Q9UU76    642   PUF6_SCHPO Pumilio homology domain family mem...6141e-111     356     37     57GO:0005730; C:nucleolus; IDA:PomBase.
GO:0003730; F:mRNA 3'-UTR binding; ISS:PomBase.::GO:0000900; F:translation repressor activity, nucleic acid binding; ISS:PomBase.
GO:2000766; P:negative regulation of cytoplasmic translation; ISS:PomBase.::GO:0042273; P:ribosomal large subunit biogenesis; ISS:PomBase.
3Q562C7    647   K0020_RAT Pumilio domain-containing protein K...3881e-45     176     29     51GO:0005730; C:nucleolus; IEA:UniProtKB-SubCell.
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
4Q8BKS9    647   K0020_MOUSE Pumilio domain-containing protein...3882e-45     175     28     51GO:0005730; C:nucleolus; IEA:UniProtKB-SubCell.
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
5Q15397    648   K0020_HUMAN Pumilio domain-containing protein...3895e-44     171     28     52GO:0005783; C:endoplasmic reticulum; IDA:UniProtKB.::GO:0005730; C:nucleolus; IDA:HPA.
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
6Q09622    766   PUF12_CAEEL Pumilio domain-containing protein...4672e-42     167     28     49
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0018991; P:oviposition; IMP:WormBase.
7Q9LRZ3    641   PUM24_ARATH Pumilio homolog 24 OS=Arabidopsis...5474e-40     159     27     47GO:0005730; C:nucleolus; IDA:TAIR.
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006417; P:regulation of translation; IEA:UniProtKB-KW.
8O61345    737   PEN_DROME Protein penguin OS=Drosophila melan...3772e-32     137     25     52
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0007475; P:apposition of dorsal and ventral imaginal disc-derived wing surfaces; IMP:FlyBase.
9Q9LJX4    961   PUM5_ARATH Pumilio homolog 5 OS=Arabidopsis t...2850.026     41.6     20     39GO:0005829; C:cytosol; IDA:TAIR.::GO:0005773; C:vacuole; IDA:TAIR.
GO:0003729; F:mRNA binding; IDA:UniProtKB.
GO:0006417; P:regulation of translation; IEA:UniProtKB-KW.
10Q07807    879   PUF3_YEAST mRNA-binding protein PUF3 OS=Sacch...2310.00005     50.4     20     41GO:0032473; C:external side of mitochondrial outer membrane; IDA:SGD.::GO:0005741; C:mitochondrial outer membrane; IEA:UniProtKB-SubCell.
GO:0003729; F:mRNA binding; IDA:SGD.
GO:0009060; P:aerobic respiration; IMP:SGD.::GO:0008298; P:intracellular mRNA localization; IMP:SGD.::GO:0051646; P:mitochondrion localization; IMP:SGD.::GO:0007005; P:mitochondrion organization; IMP:SGD.::GO:0000288; P:nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay; IMP:SGD.
11Q8TB72    1066   PUM2_HUMAN Pumilio homolog 2 OS=Homo sapiens ...2570.0005     47     19     37GO:0010494; C:cytoplasmic stress granule; ISS:UniProtKB.::GO:0048471; C:perinuclear region of cytoplasm; IDA:UniProtKB.
GO:0005515; F:protein binding; IPI:UniProtKB.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006417; P:regulation of translation; IEA:UniProtKB-KW.
12Q80U58    1066   PUM2_MOUSE Pumilio homolog 2 OS=Mus musculus ...2100.001     46.2     20     43GO:0010494; C:cytoplasmic stress granule; IDA:UniProtKB.::GO:0048471; C:perinuclear region of cytoplasm; ISS:UniProtKB.
GO:0005515; F:protein binding; IPI:UniProtKB.::GO:0003723; F:RNA binding; IDA:MGI.
GO:0006417; P:regulation of translation; IEA:UniProtKB-KW.::GO:0034063; P:stress granule assembly; IDA:MGI.
13Q9SS47    1003   PUM4_ARATH Pumilio homolog 4 OS=Arabidopsis t...2660.000003     54.3     19     43GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0003729; F:mRNA binding; IDA:UniProtKB.
GO:0006417; P:regulation of translation; IEA:UniProtKB-KW.
14Q5R5X3    1186   PUM1_PONAB Pumilio homolog 1 OS=Pongo abelii ...2560.003     44.7     19     38GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006417; P:regulation of translation; IEA:UniProtKB-KW.
15Q14671    1186   PUM1_HUMAN Pumilio homolog 1 OS=Homo sapiens ...2560.003     44.7     18     37GO:0005829; C:cytosol; TAS:Reactome.
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0016044; P:cellular membrane organization; TAS:Reactome.::GO:0006892; P:post-Golgi vesicle-mediated transport; TAS:Reactome.::GO:0006417; P:regulation of translation; IEA:UniProtKB-KW.
16Q80U78    1189   PUM1_MOUSE Pumilio homolog 1 OS=Mus musculus ...2100.001     46.2     21     42GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006417; P:regulation of translation; IEA:UniProtKB-KW.
17Q2VB19    1189   PUM1_CHICK Pumilio homolog 1 OS=Gallus gallus...2570.013     42.4     18     36GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006417; P:regulation of translation; IEA:UniProtKB-KW.
18Q9C5E7    861   PUM6_ARATH Pumilio homolog 6, chloroplastic O...2380.36     37.7     18     42GO:0009507; C:chloroplast; IEA:UniProtKB-SubCell.
GO:0003729; F:mRNA binding; IDA:UniProtKB.
GO:0006417; P:regulation of translation; IEA:UniProtKB-KW.
19Q09829    780   YAD3_SCHPO Pumilio domain-containing protein ...2200.14     39.3     20     42GO:0005794; C:Golgi apparatus; IDA:PomBase.
GO:0003729; F:mRNA binding; ISS:PomBase.
GO:0000288; P:nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay; ISS:PomBase.
20Q9LDW3    556   PUM11_ARATH Pumilio homolog 11 OS=Arabidopsis...1090.003     44.3     28     49GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006417; P:regulation of translation; IEA:UniProtKB-KW.
21P25822    1533   PUM_DROME Maternal protein pumilio OS=Drosoph...1490.73     37     21     46GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0003730; F:mRNA 3'-UTR binding; TAS:FlyBase.::GO:0000900; F:translation repressor activity, nucleic acid binding; TAS:FlyBase.
GO:0008595; P:anterior/posterior axis specification, embryo; TAS:FlyBase.::GO:0001709; P:cell fate determination; TAS:FlyBase.::GO:0048813; P:dendrite morphogenesis; IMP:FlyBase.::GO:0042078; P:germ-line stem cell division; NAS:FlyBase.::GO:0008258; P:head involution; IMP:FlyBase.::GO:0007616; P:long-term memory; IMP:FlyBase.::GO:0007067; P:mitosis; TAS:FlyBase.::GO:0045786; P:negative regulation of cell cycle; TAS:FlyBase.::GO:0045892; P:negative regulation of transcription, DNA-dependent; TAS:FlyBase.::GO:0000288; P:nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay; TAS:FlyBase.::GO:0048477; P:oogenesis; TAS:FlyBase.::GO:0007280; P:pole cell migration; TAS:FlyBase.::GO:0045727; P:positive regulation of translation; TAS:FlyBase.::GO:0008582; P:regulation of synaptic growth at neuromuscular junction; IDA:FlyBase.::GO:0050804; P:regulation of synaptic transmission; IMP:FlyBase.
22Q9ZW02    964   PUM3_ARATH Pumilio homolog 3 OS=Arabidopsis t...2650.045     40.8     20     42GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0005886; C:plasma membrane; IDA:TAIR.
GO:0003729; F:mRNA binding; IDA:UniProtKB.
GO:0006417; P:regulation of translation; IEA:UniProtKB-KW.
23Q9ZW07    968   PUM1_ARATH Pumilio homolog 1 OS=Arabidopsis t...2720.083     40     20     42GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0003729; F:mRNA binding; IDA:UniProtKB.
GO:0006417; P:regulation of translation; IEA:UniProtKB-KW.
24Q9ZW06    972   PUM2_ARATH Pumilio homolog 2 OS=Arabidopsis t...2409.4     33.1     16     42GO:0005829; C:cytosol; IDA:TAIR.
GO:0003730; F:mRNA 3'-UTR binding; IDA:UniProtKB.
GO:0006417; P:regulation of translation; IEA:UniProtKB-KW.
25Q9XI17    332   PUM20_ARATH Putative pumilio homolog 20 OS=Ar...1133     34.3     27     50GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006417; P:regulation of translation; IEA:UniProtKB-KW.
26Q9LM20    515   PUM8_ARATH Putative pumilio homolog 8, chloro...1720.29     37.7     23     41GO:0009507; C:chloroplast; IEA:UniProtKB-SubCell.
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006417; P:regulation of translation; IEA:UniProtKB-KW.
27Q18DN4    9159   HMU_HALWD Halomucin OS=Haloquadratum walsbyi ...734.2     34.7     26     55GO:0005576; C:extracellular region; IEA:UniProtKB-SubCell.::GO:0016020; C:membrane; IEA:InterPro.
GO:0005509; F:calcium ion binding; IEA:InterPro.::GO:0030246; F:carbohydrate binding; IEA:InterPro.::GO:0004180; F:carboxypeptidase activity; IEA:InterPro.
GO:0007156; P:homophilic cell adhesion; IEA:InterPro.
28Q5FJN6    877   IF2_LACAC Translation initiation factor IF-2 ...860.52     37.4     31     51GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0005525; F:GTP binding; IEA:UniProtKB-KW.::GO:0003924; F:GTPase activity; IEA:InterPro.::GO:0003743; F:translation initiation factor activity; IEA:UniProtKB-KW.
29Q82KE1    187   NRDR_STRAW Transcriptional repressor NrdR OS=...450.94     35.4     38     56
GO:0005524; F:ATP binding; IEA:UniProtKB-KW.::GO:0003677; F:DNA binding; IEA:UniProtKB-KW.::GO:0008270; F:zinc ion binding; IEA:InterPro.
GO:0045892; P:negative regulation of transcription, DNA-dependent; IEA:InterPro.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW.
30Q9N1R5    288   HACD1_SHEEP 3-hydroxyacyl-CoA dehydratase 1 O...1380.96     35.8     29     46GO:0005789; C:endoplasmic reticulum membrane; IEA:UniProtKB-SubCell.::GO:0016021; C:integral to membrane; IEA:UniProtKB-KW.
GO:0016829; F:lyase activity; IEA:UniProtKB-KW.
GO:0006633; P:fatty acid biosynthetic process; IEA:UniProtKB-KW.::GO:0007275; P:multicellular organismal development; IEA:UniProtKB-KW.
31P53109    570   AIM14_YEAST Probable metalloreductase AIM14 O...1370.99     36.2     26     45GO:0016021; C:integral to membrane; IEA:UniProtKB-KW.
GO:0009055; F:electron carrier activity; IEA:InterPro.::GO:0050660; F:flavin adenine dinucleotide binding; IEA:InterPro.::GO:0005506; F:iron ion binding; IEA:InterPro.::GO:0016491; F:oxidoreductase activity; IEA:UniProtKB-KW.
GO:0022900; P:electron transport chain; IEA:UniProtKB-KW.::GO:0006811; P:ion transport; IEA:UniProtKB-KW.
records
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