UniProt_SwissProt BLAST: Single locus

Species:

Saccharomyces cerevisiae S288C

Locus:

YDR449C

Length:

440

Number of sequences:

5887

Description:

YDR449C UTP6 SGDID:S000002857, Chr IV from 1358902-1357580, Genome Release 64-1-1, reverse complement, Verified ORF, "Nucleolar protein, component of the small subunit (SSU) processome containing the U3 snoRNA that is involved in processing of pre-18S rRNA"

rec.	Subject	Hit Length	Description	Align.Len	E value	Bit score	% ident.	% pos.	GO associations
1	Q02354	440	UTP6_YEAST U3 small nucleolar RNA-associated ...	440	0	903	100	100	GO:0034388; C:Pwp2p-containing subcomplex of 90S preribosome; IDA:SGD.::GO:0032040; C:small-subunit processome; IDA:SGD.
									GO:0030515; F:snoRNA binding; IPI:SGD.
									GO:0000480; P:endonucleolytic cleavage in 5'-ETS of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA); IMP:SGD.::GO:0000447; P:endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA); IMP:SGD.::GO:0000472; P:endonucleolytic cleavage to generate mature 5'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA); IMP:SGD.
2	O60188	488	UTP6_SCHPO U3 small nucleolar RNA-associated ...	201	3e-37	146	34	60	GO:0032153; C:cell division site; IDA:PomBase.::GO:0005829; C:cytosol; IDA:PomBase.::GO:0005730; C:nucleolus; IEA:UniProtKB-SubCell.::GO:0005732; C:small nucleolar ribonucleoprotein complex; ISS:PomBase.::GO:0032040; C:small-subunit processome; ISS:PomBase.::GO:0005816; C:spindle pole body; IDA:PomBase.
									GO:0030515; F:snoRNA binding; ISS:PomBase.
									GO:0030490; P:maturation of SSU-rRNA; ISS:PomBase.
3	Q8VCY6	597	UTP6_MOUSE U3 small nucleolar RNA-associated ...	189	5e-26	114	33	56	GO:0005730; C:nucleolus; IEA:UniProtKB-SubCell.
									GO:0005488; F:binding; IEA:InterPro.
									GO:0006364; P:rRNA processing; IEA:UniProtKB-KW.
4	Q9NYH9	597	UTP6_HUMAN U3 small nucleolar RNA-associated ...	81	3.7	33.5	30	48	GO:0005730; C:nucleolus; IDA:HPA.
									GO:0005488; F:binding; IEA:InterPro.
									GO:0006364; P:rRNA processing; IEA:UniProtKB-KW.
5	Q54WN5	609	UTP6_DICDI U3 small nucleolar RNA-associated ...	201	3e-18	90.9	28	50	GO:0005813; C:centrosome; IDA:dictyBase.::GO:0005730; C:nucleolus; IEA:UniProtKB-SubCell.::GO:0005732; C:small nucleolar ribonucleoprotein complex; ISS:dictyBase.
									GO:0030515; F:snoRNA binding; ISS:dictyBase.
									GO:0030490; P:maturation of SSU-rRNA; ISS:dictyBase.
6	Q4PB37	781	CLF1_USTMA Pre-mRNA-splicing factor CLF1 OS=U...	159	0.000003	53.5	21	45	GO:0005681; C:spliceosomal complex; IEA:UniProtKB-KW.
									GO:0005488; F:binding; IEA:InterPro.
									GO:0007049; P:cell cycle; IEA:UniProtKB-KW.::GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.
7	Q9HF03	724	CLF1_CRYNV Pre-mRNA-splicing factor CLF1 OS=g...	162	0.002	44.7	23	43	GO:0005681; C:spliceosomal complex; IEA:UniProtKB-KW.
									GO:0005488; F:binding; IEA:InterPro.
									GO:0007049; P:cell cycle; IEA:UniProtKB-KW.::GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.
8	P0CO10	726	CLF1_CRYNJ Pre-mRNA-splicing factor CLF1 OS=A...	162	0.002	44.3	23	43	GO:0005681; C:spliceosomal complex; IEA:UniProtKB-KW.
									GO:0005488; F:binding; IEA:InterPro.
									GO:0007049; P:cell cycle; IEA:UniProtKB-KW.::GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.
9	P0CO11	726	CLF1_CRYNB Pre-mRNA-splicing factor CLF1 OS=(...	162	0.002	44.3	23	43	GO:0005681; C:spliceosomal complex; IEA:UniProtKB-KW.
									GO:0005488; F:binding; IEA:InterPro.
									GO:0007049; P:cell cycle; IEA:UniProtKB-KW.::GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.
10	Q6CJK2	684	CLF1_KLULA Pre-mRNA-splicing factor CLF1 OS=1...	107	5.9	33.1	24	43	GO:0005681; C:spliceosomal complex; IEA:UniProtKB-KW.
									GO:0005488; F:binding; IEA:InterPro.
									GO:0007049; P:cell cycle; IEA:UniProtKB-KW.::GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.
11	Q9BZJ0	848	CRNL1_HUMAN Crooked neck-like protein 1 OS=Ho...	173	0.001	45.1	21	45	GO:0071013; C:catalytic step 2 spliceosome; IDA:UniProtKB.::GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0016607; C:nuclear speck; IEA:UniProtKB-SubCell.
									GO:0003723; F:RNA binding; IDA:UniProtKB.
									GO:0000245; P:spliceosomal complex assembly; IDA:UniProtKB.
12	P63155	690	CRNL1_RAT Crooked neck-like protein 1 OS=Ratt...	162	0.001	44.7	22	44
									GO:0003723; F:RNA binding; ISS:UniProtKB.
									GO:0000245; P:spliceosomal complex assembly; ISS:UniProtKB.
13	P63154	690	CRNL1_MOUSE Crooked neck-like protein 1 OS=Mu...	162	0.001	44.7	22	44	GO:0016607; C:nuclear speck; IEA:UniProtKB-SubCell.::GO:0005681; C:spliceosomal complex; ISS:UniProtKB.
									GO:0003723; F:RNA binding; ISS:UniProtKB.
									GO:0000245; P:spliceosomal complex assembly; ISS:UniProtKB.
14	Q7SGD2	695	CLF1_NEUCR Pre-mRNA-splicing factor clf-1 OS=...	44	6.4	33.1	32	57	GO:0005681; C:spliceosomal complex; IEA:UniProtKB-KW.
									GO:0005488; F:binding; IEA:InterPro.
									GO:0007049; P:cell cycle; IEA:UniProtKB-KW.::GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.
15	Q527H0	691	CLF1_MAGO7 Pre-mRNA-splicing factor CLF1 OS=b...	173	7.2	32.7	21	42	GO:0005681; C:spliceosomal complex; IEA:UniProtKB-KW.
									GO:0005488; F:binding; IEA:InterPro.
									GO:0007049; P:cell cycle; IEA:UniProtKB-KW.::GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.
16	Q4WT84	676	CLF1_ASPFU Pre-mRNA-splicing factor clf1 OS=A...	187	0.48	36.6	23	44	GO:0005681; C:spliceosomal complex; IEA:UniProtKB-KW.
									GO:0005488; F:binding; IEA:InterPro.
									GO:0007049; P:cell cycle; IEA:UniProtKB-KW.::GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.
17	P19735	899	PRP6_YEAST Pre-mRNA-splicing factor 6 OS=Sacc...	140	0.025	40.8	26	44	GO:0046540; C:U4/U6 x U5 tri-snRNP complex; IDA:SGD.
									GO:0005515; F:protein binding; IPI:IntAct.
									GO:0000398; P:nuclear mRNA splicing, via spliceosome; IPI:SGD.
18	Q750X3	683	CLF1_ASHGO Pre-mRNA-splicing factor CLF1 OS=Y...	59	2.8	34.3	29	49	GO:0005681; C:spliceosomal complex; IEA:UniProtKB-KW.
									GO:0005488; F:binding; IEA:InterPro.
									GO:0007049; P:cell cycle; IEA:UniProtKB-KW.::GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.
19	Q5K654	677	CLF1_PARBR Pre-mRNA-splicing factor CLF1 OS=P...	161	4.9	33.5	19	39	GO:0005681; C:spliceosomal complex; IEA:UniProtKB-KW.
									GO:0005488; F:binding; IEA:InterPro.
									GO:0007049; P:cell cycle; IEA:UniProtKB-KW.::GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.
20	Q5BDX1	673	CLF1_EMENI Pre-mRNA-splicing factor clf1 OS=1...	187	1.3	35	23	44	GO:0005681; C:spliceosomal complex; IEA:UniProtKB-KW.
									GO:0005488; F:binding; IEA:InterPro.
									GO:0007049; P:cell cycle; IEA:UniProtKB-KW.::GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.
21	Q6BSP7	714	CLF1_DEBHA Pre-mRNA-splicing factor CLF1 OS=0...	59	0.14	38.1	32	51	GO:0005681; C:spliceosomal complex; IEA:UniProtKB-KW.
									GO:0005488; F:binding; IEA:InterPro.
									GO:0007049; P:cell cycle; IEA:UniProtKB-KW.::GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.
22	Q6FW76	695	CLF1_CANGA Pre-mRNA-splicing factor CLF1 OS=N...	171	0.077	39.3	21	44	GO:0005681; C:spliceosomal complex; IEA:UniProtKB-KW.
									GO:0005488; F:binding; IEA:InterPro.
									GO:0007049; P:cell cycle; IEA:UniProtKB-KW.::GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.
23	Q6C186	676	CLF1_YARLI Pre-mRNA-splicing factor CLF1 OS=l...	79	0.13	38.5	24	47	GO:0005681; C:spliceosomal complex; IEA:UniProtKB-KW.
									GO:0005488; F:binding; IEA:InterPro.
									GO:0007049; P:cell cycle; IEA:UniProtKB-KW.::GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.
24	P87312	674	CLF1_SCHPO Pre-mRNA-splicing factor cwf4 OS=S...	83	4.5	33.5	23	46	GO:0005681; C:spliceosomal complex; IDA:PomBase.
									GO:0005515; F:protein binding; IPI:IntAct.
									GO:0007049; P:cell cycle; IEA:UniProtKB-KW.::GO:0045292; P:nuclear mRNA cis splicing, via spliceosome; IC:PomBase.
25	Q5B3I8	1075	RNA14_EMENI mRNA 3'-end-processing protein rn...	98	0.36	37	26	48	GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
									GO:0005488; F:binding; IEA:InterPro.
									GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.
26	Q2KJJ0	941	PRP6_BOVIN Pre-mRNA-processing factor 6 OS=Bo...	63	0.4	37	32	46	GO:0016607; C:nuclear speck; IEA:UniProtKB-SubCell.
									GO:0000398; P:nuclear mRNA splicing, via spliceosome; IEA:InterPro.
27	Q4PCV8	945	RNA14_USTMA mRNA 3'-end-processing protein RN...	53	5	33.5	32	51	GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
									GO:0005488; F:binding; IEA:InterPro.
									GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.
28	A7MB10	1874	RRP5_BOVIN Protein RRP5 homolog OS=Bos taurus...	99	0.5	36.6	24	45	GO:0005730; C:nucleolus; IEA:UniProtKB-SubCell.
									GO:0003723; F:RNA binding; IEA:InterPro.
									GO:0006397; P:mRNA processing; IEA:InterPro.::GO:0006364; P:rRNA processing; IEA:UniProtKB-KW.
29	O94906	941	PRP6_HUMAN Pre-mRNA-processing factor 6 OS=Ho...	63	0.57	36.6	30	46	GO:0071013; C:catalytic step 2 spliceosome; IDA:UniProtKB.::GO:0016607; C:nuclear speck; IEA:UniProtKB-SubCell.::GO:0071001; C:U4/U6 snRNP; IDA:BHF-UCL.::GO:0046540; C:U4/U6 x U5 tri-snRNP complex; IDA:BHF-UCL.::GO:0005682; C:U5 snRNP; IDA:BHF-UCL.
									GO:0050681; F:androgen receptor binding; IPI:MGI.::GO:0043021; F:ribonucleoprotein complex binding; IDA:BHF-UCL.::GO:0003713; F:transcription coactivator activity; IGI:MGI.
									GO:0000244; P:assembly of spliceosomal tri-snRNP; IMP:BHF-UCL.::GO:0045944; P:positive regulation of transcription from RNA polymerase II promoter; IDA:MGI.::GO:0000245; P:spliceosomal complex assembly; NAS:UniProtKB.
30	Q91YR7	941	PRP6_MOUSE Pre-mRNA-processing factor 6 OS=Mu...	63	0.62	36.2	30	46	GO:0016607; C:nuclear speck; IEA:UniProtKB-SubCell.
									GO:0000398; P:nuclear mRNA splicing, via spliceosome; IEA:InterPro.
31	Q03776	544	PRP42_YEAST U1 small nuclear ribonucleoprotei...	103	0.63	36.2	31	46	GO:0005685; C:U1 snRNP; IDA:SGD.::GO:0071004; C:U2-type prespliceosome; IDA:SGD.
									GO:0003723; F:RNA binding; IDA:SGD.
									GO:0000398; P:nuclear mRNA splicing, via spliceosome; IMP:SGD.

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