Fungal Genome Collection
University of Nebraska Lincoln
School of Biological Sciences and Center for Plant Science Innovation
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UniProt_SwissProt BLAST: Single locus
Species:
Saccharomyces cerevisiae S288C
Locus:
YDR449C
Length:
440
Number of sequences:
5887
Description:
YDR449C UTP6 SGDID:S000002857, Chr IV from 1358902-1357580, Genome Release 64-1-1, reverse complement, Verified ORF, "Nucleolar protein, component of the small subunit (SSU) processome containing the U3 snoRNA that is involved in processing of pre-18S rRNA"
rec.SubjectHit LengthDescriptionAlign.LenE valueBit score% ident.  % pos.GO associations
31Q03776    544   PRP42_YEAST U1 small nuclear ribonucleoprotei...1030.63     36.2     31     46GO:0005685; C:U1 snRNP; IDA:SGD.::GO:0071004; C:U2-type prespliceosome; IDA:SGD.
GO:0003723; F:RNA binding; IDA:SGD.
GO:0000398; P:nuclear mRNA splicing, via spliceosome; IMP:SGD.
32Q5RCC2    941   PRP6_PONAB Pre-mRNA-processing factor 6 OS=Po...630.75     36.2     30     46GO:0016607; C:nuclear speck; IEA:UniProtKB-SubCell.::GO:0005681; C:spliceosomal complex; IEA:UniProtKB-KW.
GO:0005488; F:binding; IEA:InterPro.
GO:0000398; P:nuclear mRNA splicing, via spliceosome; IEA:InterPro.
33A1A5S1    941   PRP6_RAT Pre-mRNA-processing factor 6 OS=Ratt...631.1     35.4     29     46GO:0016607; C:nuclear speck; IEA:UniProtKB-SubCell.
GO:0000398; P:nuclear mRNA splicing, via spliceosome; IEA:InterPro.
34Q54XP4    705   CRNL1_DICDI Crooked neck-like protein 1 OS=Di...1592.6     34.3     20     39GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0016607; C:nuclear speck; IEA:UniProtKB-SubCell.::GO:0005681; C:spliceosomal complex; ISS:UniProtKB.
GO:0003723; F:RNA binding; ISS:UniProtKB.
GO:0000245; P:spliceosomal complex assembly; ISS:UniProtKB.
35Q5AED6    758   CLF1_CANAL Pre-mRNA-splicing factor CLF1 OS=C...1032.6     34.3     26     44GO:0005681; C:spliceosomal complex; IEA:UniProtKB-KW.
GO:0005488; F:binding; IEA:InterPro.
GO:0007049; P:cell cycle; IEA:UniProtKB-KW.::GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.
36O74970    612   PRP39_SCHPO Pre-mRNA-processing factor 39 OS=...992.6     34.3     22     44GO:0000243; C:commitment complex; ISS:PomBase.::GO:0005685; C:U1 snRNP; IDA:PomBase.
GO:0000395; P:nuclear mRNA 5'-splice site recognition; ISS:PomBase.
37A6TR77    312   MIAA_ALKMQ tRNA dimethylallyltransferase OS=A...982.9     33.9     26     44
GO:0005524; F:ATP binding; IEA:UniProtKB-KW.::GO:0052381; F:tRNA dimethylallyltransferase activity; IEA:EC.
GO:0008033; P:tRNA processing; IEA:UniProtKB-KW.
38Q54QP0    1320   U614_DICDI UPF0614 protein OS=Dictyostelium d...863.9     33.9     27     51GO:0005622; C:intracellular; IEA:InterPro.
GO:0006396; P:RNA processing; IEA:InterPro.
39Q12309    687   CLF1_YEAST Pre-mRNA-splicing factor CLF1 OS=S...1687.9     32.7     22     43GO:0000785; C:chromatin; IDA:SGD.::GO:0000974; C:Prp19 complex; IDA:SGD.::GO:0071006; C:U2-type catalytic step 1 spliceosome; IDA:SGD.::GO:0071007; C:U2-type catalytic step 2 spliceosome; IDA:SGD.::GO:0071008; C:U2-type post-mRNA release spliceosomal complex; IDA:SGD.::GO:0071004; C:U2-type prespliceosome; IDA:SGD.
GO:0003682; F:chromatin binding; IDA:SGD.::GO:0003688; F:DNA replication origin binding; IDA:SGD.::GO:0005515; F:protein binding; IPI:IntAct.
GO:0007049; P:cell cycle; IEA:UniProtKB-KW.::GO:0000354; P:cis assembly of pre-catalytic spliceosome; IMP:SGD.::GO:0006270; P:DNA-dependent DNA replication initiation; IMP:SGD.
40O14233    733   RNA14_SCHPO mRNA 3'-end-processing protein rn...565.1     33.1     27     52GO:0005739; C:mitochondrion; ISS:PomBase.::GO:0005847; C:mRNA cleavage and polyadenylation specificity factor complex; ISS:PomBase.
GO:0005488; F:binding; IEA:InterPro.
GO:0006379; P:mRNA cleavage; ISS:PomBase.::GO:0006378; P:mRNA polyadenylation; ISS:PomBase.
41Q54Z08    850   SYF1_DICDI Pre-mRNA-splicing factor SYF1 OS=D...1015.2     33.1     24     45GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0005488; F:binding; IEA:InterPro.
GO:0006281; P:DNA repair; IEA:UniProtKB-KW.::GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW.
42Q4WVF4    839   SYF1_ASPFU Pre-mRNA-splicing factor syf1 OS=A...1306.7     33.1     21     39GO:0005681; C:spliceosomal complex; IEA:UniProtKB-KW.
GO:0005488; F:binding; IEA:InterPro.
GO:0007049; P:cell cycle; IEA:UniProtKB-KW.::GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.
43B2V9P9    678   SYGB_SULSY Glycine--tRNA ligase beta subunit ...1197.1     32.7     23     50GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0004814; F:arginine-tRNA ligase activity; IEA:InterPro.::GO:0005524; F:ATP binding; IEA:UniProtKB-KW.::GO:0004820; F:glycine-tRNA ligase activity; IEA:EC.
GO:0006420; P:arginyl-tRNA aminoacylation; IEA:InterPro.::GO:0006426; P:glycyl-tRNA aminoacylation; IEA:InterPro.
44Q8K2Z2    665   PRP39_MOUSE Pre-mRNA-processing factor 39 OS=...858.4     32.7     25     42GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0005488; F:binding; IEA:InterPro.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.
45Q86UA1    669   PRP39_HUMAN Pre-mRNA-processing factor 39 OS=...858.5     32.7     25     42GO:0005634; C:nucleus; IDA:HPA.
GO:0005488; F:binding; IEA:InterPro.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.
46Q6C8L8    806   RNA14_YARLI mRNA 3'-end-processing protein RN...859.2     32.3     26     47GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0005488; F:binding; IEA:InterPro.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.
records
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