Fungal Genome Collection
University of Nebraska Lincoln
School of Biological Sciences and Center for Plant Science Innovation
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UniProt_SwissProt BLAST: Single locus
Species:
Saccharomyces cerevisiae S288C
Locus:
YDR432W
Length:
414
Number of sequences:
5887
Description:
YDR432W NPL3 SGDID:S000002840, Chr IV from 1328783-1330027, Genome Release 64-1-1, Verified ORF, "RNA-binding protein that promotes elongation, regulates termination, and carries poly(A) mRNA from nucleus to cytoplasm; required for pre-mRNA splicing; dissociation from mRNAs promoted by Mtr10p; phosphorylated by Sky1p in the cytoplasm"
rec.SubjectHit LengthDescriptionAlign.LenE valueBit score% ident.  % pos.GO associations
61P60047    382   PABP5_GORGO Polyadenylate-binding protein 5 O...1370.72     35.8     23     42GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
62P38922    454   HRB1_YEAST Protein HRB1 OS=Saccharomyces cere...1760.000004     52.4     24     39GO:0005737; C:cytoplasm; IDA:SGD.::GO:0030530; C:heterogeneous nuclear ribonucleoprotein complex; NAS:SGD.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IDA:SGD.
GO:0016973; P:poly(A)+ mRNA export from nucleus; IPI:SGD.
63O43390    633   HNRPR_HUMAN Heterogeneous nuclear ribonucleop...1740.081     38.9     25     44GO:0071013; C:catalytic step 2 spliceosome; IDA:UniProtKB.::GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0030530; C:heterogeneous nuclear ribonucleoprotein complex; TAS:ProtInc.::GO:0005654; C:nucleoplasm; TAS:Reactome.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0005515; F:protein binding; IPI:IntAct.::GO:0003723; F:RNA binding; TAS:ProtInc.
GO:0000398; P:nuclear mRNA splicing, via spliceosome; IC:UniProtKB.
64Q9FMP4    124   PM14_ARATH Pre-mRNA branch site p14-like prot...830.000005     49.3     33     55GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.
65Q3MHX3    362   RBM4_BOVIN RNA-binding protein 4 OS=Bos tauru...790.013     41.2     30     46GO:0010494; C:cytoplasmic stress granule; ISS:UniProtKB.::GO:0016607; C:nuclear speck; ISS:UniProtKB.::GO:0005730; C:nucleolus; ISS:UniProtKB.
GO:0035198; F:miRNA binding; ISS:UniProtKB.::GO:0003730; F:mRNA 3'-UTR binding; ISS:UniProtKB.::GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0036002; F:pre-mRNA binding; ISS:UniProtKB.::GO:0008270; F:zinc ion binding; IEA:InterPro.
GO:0030154; P:cell differentiation; IEA:UniProtKB-KW.::GO:0032922; P:circadian regulation of gene expression; ISS:UniProtKB.::GO:0043153; P:entrainment of circadian clock by photoperiod; ISS:UniProtKB.::GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0032055; P:negative regulation of translation in response to stress; ISS:UniProtKB.::GO:0035278; P:negative regulation of translation involved in gene silencing by miRNA; ISS:UniProtKB.::GO:0045947; P:negative regulation of translational initiation; ISS:UniProtKB.::GO:0051149; P:positive regulation of muscle cell differentiation; ISS:UniProtKB.::GO:0000381; P:regulation of alternative nuclear mRNA splicing, via spliceosome; ISS:UniProtKB.::GO:0046822; P:regulation of nucleocytoplasmic transport; ISS:UniProtKB.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.::GO:0051403; P:stress-activated MAPK cascade; ISS:UniProtKB.
66Q9EPH8    636   PABP1_RAT Polyadenylate-binding protein 1 OS=...1670.066     39.3     22     43GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0005681; C:spliceosomal complex; IEA:UniProtKB-KW.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0008143; F:poly(A) RNA binding; ISS:UniProtKB.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:2000623; P:negative regulation of nuclear-transcribed mRNA catabolic process, nonsense-mediated decay; ISS:UniProtKB.::GO:0000184; P:nuclear-transcribed mRNA catabolic process, nonsense-mediated decay; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.
67Q6FKG4    579   PABP_CANGA Polyadenylate-binding protein, cyt...930.022     40.8     26     43GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0051028; P:mRNA transport; IEA:UniProtKB-KW.::GO:0006417; P:regulation of translation; IEA:UniProtKB-KW.
68P29341    636   PABP1_MOUSE Polyadenylate-binding protein 1 O...1670.056     39.3     22     43GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0005681; C:spliceosomal complex; IEA:UniProtKB-KW.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0008143; F:poly(A) RNA binding; ISS:UniProtKB.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:2000623; P:negative regulation of nuclear-transcribed mRNA catabolic process, nonsense-mediated decay; ISS:UniProtKB.::GO:0000184; P:nuclear-transcribed mRNA catabolic process, nonsense-mediated decay; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.
69Q9LEB3    428   RBP47_NICPL Polyadenylate-binding protein RBP...850.000008     51.2     32     54GO:0010494; C:cytoplasmic stress granule; IDA:UniProtKB.::GO:0005634; C:nucleus; IDA:UniProtKB.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0008143; F:poly(A) RNA binding; IDA:UniProtKB.
GO:0034605; P:cellular response to heat; IDA:UniProtKB.::GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.
70P0DJD4    496   RBY1C_HUMAN RNA-binding motif protein, Y chro...790.000009     51.2     29     52GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.
71P92964    264   RSP31_ARATH Arginine/serine-rich-splicing fac...1570.0004     45.4     26     45GO:0016607; C:nuclear speck; IDA:TAIR.::GO:0005681; C:spliceosomal complex; TAS:TAIR.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0000398; P:nuclear mRNA splicing, via spliceosome; IDA:TAIR.
72O61374    348   SXL_CERCA Sex-lethal homolog OS=Ceratitis cap...1550.000009     50.8     25     43GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
73Q4R979    364   RBM4_MACFA RNA-binding protein 4 OS=Macaca fa...790.018     40.8     30     46GO:0010494; C:cytoplasmic stress granule; ISS:UniProtKB.::GO:0016607; C:nuclear speck; ISS:UniProtKB.::GO:0005730; C:nucleolus; ISS:UniProtKB.
GO:0035198; F:miRNA binding; ISS:UniProtKB.::GO:0003730; F:mRNA 3'-UTR binding; ISS:UniProtKB.::GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0036002; F:pre-mRNA binding; ISS:UniProtKB.::GO:0008270; F:zinc ion binding; IEA:InterPro.
GO:0030154; P:cell differentiation; IEA:UniProtKB-KW.::GO:0032922; P:circadian regulation of gene expression; ISS:UniProtKB.::GO:0043153; P:entrainment of circadian clock by photoperiod; ISS:UniProtKB.::GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0032055; P:negative regulation of translation in response to stress; ISS:UniProtKB.::GO:0035278; P:negative regulation of translation involved in gene silencing by miRNA; ISS:UniProtKB.::GO:0045947; P:negative regulation of translational initiation; ISS:UniProtKB.::GO:0051149; P:positive regulation of muscle cell differentiation; ISS:UniProtKB.::GO:0000381; P:regulation of alternative nuclear mRNA splicing, via spliceosome; ISS:UniProtKB.::GO:0046822; P:regulation of nucleocytoplasmic transport; ISS:UniProtKB.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.::GO:0051403; P:stress-activated MAPK cascade; ISS:UniProtKB.
74Q9BWF3    364   RBM4_HUMAN RNA-binding protein 4 OS=Homo sapi...790.018     40.8     30     46GO:0010494; C:cytoplasmic stress granule; IDA:UniProtKB.::GO:0016607; C:nuclear speck; IDA:UniProtKB.::GO:0005730; C:nucleolus; IDA:UniProtKB.
GO:0035198; F:miRNA binding; IDA:UniProtKB.::GO:0003730; F:mRNA 3'-UTR binding; ISS:UniProtKB.::GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0036002; F:pre-mRNA binding; IDA:UniProtKB.::GO:0005515; F:protein binding; IPI:UniProtKB.::GO:0008270; F:zinc ion binding; IEA:InterPro.
GO:0030154; P:cell differentiation; IEA:UniProtKB-KW.::GO:0032922; P:circadian regulation of gene expression; ISS:UniProtKB.::GO:0043153; P:entrainment of circadian clock by photoperiod; ISS:UniProtKB.::GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0032055; P:negative regulation of translation in response to stress; IDA:UniProtKB.::GO:0035278; P:negative regulation of translation involved in gene silencing by miRNA; IDA:UniProtKB.::GO:0045947; P:negative regulation of translational initiation; IDA:UniProtKB.::GO:0051149; P:positive regulation of muscle cell differentiation; IDA:UniProtKB.::GO:0000381; P:regulation of alternative nuclear mRNA splicing, via spliceosome; IDA:UniProtKB.::GO:0046822; P:regulation of nucleocytoplasmic transport; IDA:UniProtKB.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.::GO:0051403; P:stress-activated MAPK cascade; IDA:UniProtKB.
75A5DM21    631   PABP_PICGU Polyadenylate-binding protein, cyt...1050.36     37     26     45GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0051028; P:mRNA transport; IEA:UniProtKB-KW.::GO:0006417; P:regulation of translation; IEA:UniProtKB-KW.
76O01671    321   SXL_MEGSC Sex-lethal homolog OS=Megaselia sca...670.053     38.9     28     49GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
77Q4VXU2    614   PAP1L_HUMAN Polyadenylate-binding protein 1-l...1610.051     39.7     24     40
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
78Q15415    496   RBY1F_HUMAN RNA-binding motif protein, Y chro...790.00001     50.8     29     51GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; NAS:UniProtKB.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.::GO:0007283; P:spermatogenesis; NAS:UniProtKB.
79Q9P2K5    600   MYEF2_HUMAN Myelin expression factor 2 OS=Hom...842.5     34.3     27     46GO:0005794; C:Golgi apparatus; IDA:HPA.::GO:0005634; C:nucleus; IDA:UniProtKB.
GO:0003677; F:DNA binding; IEA:UniProtKB-KW.::GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0014902; P:myotube differentiation; IEP:UniProtKB.::GO:0030182; P:neuron differentiation; IEP:UniProtKB.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW.
80Q5R8F7    636   PABP1_PONAB Polyadenylate-binding protein 1 O...1670.012     41.6     23     43GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0005681; C:spliceosomal complex; IEA:UniProtKB-KW.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:2000623; P:negative regulation of nuclear-transcribed mRNA catabolic process, nonsense-mediated decay; ISS:UniProtKB.::GO:0000184; P:nuclear-transcribed mRNA catabolic process, nonsense-mediated decay; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.
81Q5AI15    629   PABP_CANAL Polyadenylate-binding protein, cyt...1050.18     37.7     28     47GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0051028; P:mRNA transport; IEA:UniProtKB-KW.::GO:0006417; P:regulation of translation; IEA:UniProtKB-KW.
82P11940    636   PABP1_HUMAN Polyadenylate-binding protein 1 O...1670.013     41.2     23     43GO:0071013; C:catalytic step 2 spliceosome; IDA:UniProtKB.::GO:0005829; C:cytosol; TAS:Reactome.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0008143; F:poly(A) RNA binding; TAS:UniProtKB.::GO:0008022; F:protein C-terminus binding; IPI:UniProtKB.::GO:0008494; F:translation activator activity; TAS:UniProtKB.
GO:0006378; P:mRNA polyadenylation; TAS:UniProtKB.::GO:0048255; P:mRNA stabilization; TAS:UniProtKB.::GO:2000623; P:negative regulation of nuclear-transcribed mRNA catabolic process, nonsense-mediated decay; IDA:UniProtKB.::GO:0000398; P:nuclear mRNA splicing, via spliceosome; IC:UniProtKB.::GO:0000184; P:nuclear-transcribed mRNA catabolic process, nonsense-mediated decay; TAS:Reactome.::GO:0000289; P:nuclear-transcribed mRNA poly(A) tail shortening; TAS:Reactome.::GO:0006413; P:translational initiation; TAS:Reactome.
83P61286    636   PABP1_BOVIN Polyadenylate-binding protein 1 O...1670.013     41.2     23     43GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0005681; C:spliceosomal complex; IEA:UniProtKB-KW.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0005515; F:protein binding; IPI:AgBase.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:2000623; P:negative regulation of nuclear-transcribed mRNA catabolic process, nonsense-mediated decay; ISS:UniProtKB.::GO:0000184; P:nuclear-transcribed mRNA catabolic process, nonsense-mediated decay; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.
84Q9NWB1    397   RFOX1_HUMAN RNA binding protein fox-1 homolog...1850.00002     50.4     27     41GO:0005737; C:cytoplasm; IDA:UniProtKB.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.::GO:0005802; C:trans-Golgi network; IDA:UniProtKB.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0008022; F:protein C-terminus binding; IPI:UniProtKB.::GO:0003723; F:RNA binding; NAS:UniProtKB.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.::GO:0050658; P:RNA transport; NAS:UniProtKB.
85P31209    653   PABP_SCHPO Polyadenylate-binding protein, cyt...1630.047     39.7     23     42GO:0005829; C:cytosol; IDA:PomBase.::GO:0005634; C:nucleus; IDA:PomBase.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0008143; F:poly(A) RNA binding; TAS:PomBase.
GO:0002183; P:cytoplasmic translational initiation; NAS:PomBase.::GO:0006406; P:mRNA export from nucleus; IMP:PomBase.::GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0006446; P:regulation of translational initiation; ISS:PomBase.
86O59670    115   PM14_SCHPO Pre-mRNA branch site p14-like prot...860.00002     47.8     30     56GO:0005681; C:spliceosomal complex; NAS:PomBase.::GO:0005686; C:U2 snRNP; ISS:PomBase.
GO:0000384; F:first spliceosomal transesterification activity; ISS:PomBase.::GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0045292; P:nuclear mRNA cis splicing, via spliceosome; ISS:PomBase.
87Q8C854    591   MYEF2_MOUSE Myelin expression factor 2 OS=Mus...850.73     35.8     28     46GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0003677; F:DNA binding; IEA:UniProtKB-KW.::GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW.
88Q95KI0    376   RFOX1_MACFA RNA binding protein fox-1 homolog...1890.00002     50.1     27     41GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.
89Q62826    690   HNRPM_RAT Heterogeneous nuclear ribonucleopro...811.4     35     27     46GO:0016363; C:nuclear matrix; IEA:UniProtKB-SubCell.::GO:0005681; C:spliceosomal complex; IEA:UniProtKB-KW.
GO:0003823; F:antigen binding; IMP:RGD.::GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0005515; F:protein binding; IPI:BHF-UCL.::GO:0003723; F:RNA binding; TAS:RGD.
GO:0000398; P:nuclear mRNA splicing, via spliceosome; IEA:InterPro.
90P20965    633   PABPA_XENLA Polyadenylate-binding protein 1-A...1620.004     43.1     23     46GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0005844; C:polysome; IDA:UniProtKB.
GO:0031370; F:eukaryotic initiation factor 4G binding; IPI:UniProtKB.::GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0008143; F:poly(A) RNA binding; IDA:UniProtKB.::GO:0043621; F:protein self-association; IPI:UniProtKB.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0048255; P:mRNA stabilization; IDA:UniProtKB.::GO:0060212; P:negative regulation of nuclear-transcribed mRNA poly(A) tail shortening; IDA:UniProtKB.::GO:0006417; P:regulation of translation; IEA:UniProtKB-KW.::GO:0006412; P:translation; IEA:UniProtKB-KW.
91Q4R813    394   RMXL2_MACFA RNA-binding motif protein, X-link...800.00002     50.1     31     50GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.::GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
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