rec. | Subject | Hit Length | Description | Align.Len | E value | Bit score | % ident. | % pos. | GO associations |
391 | Q2HJG2 | 530 | PUF60_BOVIN Poly(U)-binding-splicing factor P... | 83 | 0.5 | 35.4 | 29 | 46 | GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.::GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW. | | | | | | | | | | GO:0003677; F:DNA binding; IEA:UniProtKB-KW.::GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW. | | | | | | | | | | GO:0006915; P:apoptotic process; IEA:UniProtKB-KW.::GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0006355; P:regulation of transcription, DNA-dependent; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW. | 392 | Q66J99 | 190 | RBM18_XENLA Probable RNA-binding protein 18 O... | 44 | 0.5 | 34.7 | 34 | 61 | | | | | | | | | | | GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW. | | | | | | | | | | | 393 | O43390 | 633 | HNRPR_HUMAN Heterogeneous nuclear ribonucleop... | 52 | 0.52 | 35.4 | 33 | 60 | GO:0071013; C:catalytic step 2 spliceosome; IDA:UniProtKB.::GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0030530; C:heterogeneous nuclear ribonucleoprotein complex; TAS:ProtInc.::GO:0005654; C:nucleoplasm; TAS:Reactome. | | | | | | | | | | GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0005515; F:protein binding; IPI:IntAct.::GO:0003723; F:RNA binding; TAS:ProtInc. | | | | | | | | | | GO:0000398; P:nuclear mRNA splicing, via spliceosome; IC:UniProtKB. | 394 | Q9IBD1 | 452 | CELF3_DANRE CUGBP Elav-like family member 3 O... | 87 | 0.54 | 35.4 | 23 | 49 | GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. | | | | | | | | | | GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW. | | | | | | | | | | GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0048026; P:positive regulation of nuclear mRNA splicing, via spliceosome; ISS:UniProtKB. | 395 | Q5SP50 | 218 | ZCRB1_DANRE Zinc finger CCHC-type and RNA-bin... | 52 | 0.55 | 34.7 | 33 | 56 | GO:0005681; C:spliceosomal complex; IEA:UniProtKB-KW. | | | | | | | | | | GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.::GO:0008270; F:zinc ion binding; IEA:InterPro. | | | | | | | | | | GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW. | 396 | Q9VVE5 | 369 | MSIR6_DROME RNA-binding protein Musashi homol... | 35 | 0.56 | 35 | 40 | 63 | GO:0005737; C:cytoplasm; ISS:UniProtKB.::GO:0005844; C:polysome; ISS:UniProtKB. | | | | | | | | | | GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0008266; F:poly(U) RNA binding; ISS:UniProtKB. | | | | | | | | | | GO:0048864; P:stem cell development; ISS:UniProtKB. | 397 | Q2GSX8 | 783 | PABP_CHAGB Polyadenylate-binding protein, cyt... | 77 | 0.56 | 35.4 | 27 | 51 | GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. | | | | | | | | | | GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW. | | | | | | | | | | GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0051028; P:mRNA transport; IEA:UniProtKB-KW.::GO:0006417; P:regulation of translation; IEA:UniProtKB-KW. | 398 | Q4WAQ9 | 459 | PPIL4_ASPFU Peptidyl-prolyl cis-trans isomera... | 61 | 0.56 | 35 | 33 | 56 | GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. | | | | | | | | | | GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003755; F:peptidyl-prolyl cis-trans isomerase activity; IEA:UniProtKB-KW.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW. | | | | | | | | | | GO:0006457; P:protein folding; IEA:UniProtKB-KW. | 399 | Q5BGA9 | 819 | MRD1_EMENI Multiple RNA-binding domain-contai... | 57 | 0.58 | 35.4 | 28 | 51 | GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.::GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW. | | | | | | | | | | GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW. | | | | | | | | | | GO:0006364; P:rRNA processing; IEA:UniProtKB-KW. | 400 | O74968 | 249 | RU1A_SCHPO U1 small nuclear ribonucleoprotein... | 105 | 0.58 | 34.7 | 28 | 48 | GO:0005730; C:nucleolus; IDA:PomBase.::GO:0005681; C:spliceosomal complex; IEA:UniProtKB-KW.::GO:0005685; C:U1 snRNP; IDA:PomBase. | | | | | | | | | | GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0017069; F:snRNA binding; IEA:InterPro. | | | | | | | | | | GO:0000395; P:nuclear mRNA 5'-splice site recognition; IC:PomBase. | 401 | Q6CDH3 | 629 | PABP_YARLI Polyadenylate-binding protein, cyt... | 97 | 1.1 | 34.3 | 26 | 47 | GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. | | | | | | | | | | GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW. | | | | | | | | | | GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0051028; P:mRNA transport; IEA:UniProtKB-KW.::GO:0006417; P:regulation of translation; IEA:UniProtKB-KW. | 402 | Q2R0Q1 | 574 | U2A2A_ORYSJ Splicing factor U2af large subuni... | 46 | 0.61 | 35 | 37 | 57 | GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. | | | | | | | | | | GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW. | | | | | | | | | | GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW. | 403 | P17130 | 365 | ROA1_XENLA Heterogeneous nuclear ribonucleopr... | 93 | 0.64 | 35 | 28 | 51 | GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.::GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW. | | | | | | | | | | GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW. | | | | | | | | | | | 404 | B4NB54 | 154 | NCBP2_DROWI Nuclear cap-binding protein subun... | 97 | 0.65 | 33.9 | 28 | 47 | GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. | | | | | | | | | | GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW. | | | | | | | | | | GO:0031047; P:gene silencing by RNA; IEA:UniProtKB-KW.::GO:0006370; P:mRNA capping; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW. | 405 | Q66KL9 | 392 | RBM42_XENTR RNA-binding protein 42 OS=Xenopus... | 37 | 0.65 | 35 | 38 | 65 | GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. | | | | | | | | | | GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW. | | | | | | | | | | | 406 | B5DGI7 | 175 | RBM8A_SALSA RNA-binding protein 8A OS=Salmo s... | 76 | 0.66 | 34.3 | 25 | 50 | GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0016607; C:nuclear speck; IEA:UniProtKB-SubCell. | | | | | | | | | | GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW. | | | | | | | | | | GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0051028; P:mRNA transport; IEA:UniProtKB-KW.::GO:0000184; P:nuclear-transcribed mRNA catabolic process, nonsense-mediated decay; IEA:UniProtKB-KW.::GO:0006417; P:regulation of translation; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW. | 407 | Q6FXP4 | 861 | MRD1_CANGA Multiple RNA-binding domain-contai... | 55 | 0.66 | 35 | 33 | 51 | GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.::GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW. | | | | | | | | | | GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW. | | | | | | | | | | GO:0006364; P:rRNA processing; IEA:UniProtKB-KW. | 408 | Q6DRG1 | 402 | RBM42_DANRE RNA-binding protein 42 OS=Danio r... | 37 | 0.66 | 35 | 41 | 65 | GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. | | | | | | | | | | GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW. | | | | | | | | | | GO:0002088; P:lens development in camera-type eye; IMP:ZFIN. | 409 | A2Q848 | 731 | PABP_ASPNC Polyadenylate-binding protein, cyt... | 62 | 0.68 | 35 | 31 | 55 | GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. | | | | | | | | | | GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW. | | | | | | | | | | GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0051028; P:mRNA transport; IEA:UniProtKB-KW.::GO:0006417; P:regulation of translation; IEA:UniProtKB-KW. | 410 | P51968 | 373 | RO31_XENLA Heterogeneous nuclear ribonucleopr... | 53 | 0.88 | 34.7 | 28 | 57 | GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.::GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW. | | | | | | | | | | GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW. | | | | | | | | | | | 411 | Q6PBM8 | 188 | RBM18_DANRE Probable RNA-binding protein 18 O... | 39 | 0.71 | 34.3 | 38 | 67 | | | | | | | | | | | GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW. | | | | | | | | | | | 412 | Q8IY67 | 606 | RAVR1_HUMAN Ribonucleoprotein PTB-binding 1 O... | 60 | 0.72 | 35 | 32 | 53 | GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. | | | | | | | | | | GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW. | | | | | | | | | | | 413 | Q01560 | 414 | NOP3_YEAST Nucleolar protein 3 OS=Saccharomyc... | 60 | 0.76 | 34.7 | 32 | 48 | GO:0005737; C:cytoplasm; IMP:SGD.::GO:0005730; C:nucleolus; IEA:UniProtKB-SubCell.::GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW. | | | | | | | | | | GO:0031370; F:eukaryotic initiation factor 4G binding; IDA:SGD.::GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0008143; F:poly(A) RNA binding; IDA:SGD.::GO:0000993; F:RNA polymerase II core binding; IPI:SGD. | | | | | | | | | | GO:0006406; P:mRNA export from nucleus; IGI:SGD.::GO:2000805; P:negative regulation of termination of RNA polymerase II transcription, poly(A)-coupled; IDA:SGD.::GO:0017148; P:negative regulation of translation; IDA:SGD.::GO:0000398; P:nuclear mRNA splicing, via spliceosome; IMP:SGD.::GO:0032968; P:positive regulation of transcription elongation from RNA polymerase II promoter; IDA:SGD.::GO:0006364; P:rRNA processing; IEA:UniProtKB-KW.::GO:0006415; P:translational termination; IMP:SGD. | 414 | Q9UUE4 | 432 | PPIL4_SCHPO Peptidyl-prolyl cis-trans isomera... | 41 | 0.77 | 34.7 | 44 | 61 | GO:0000790; C:nuclear chromatin; IDA:PomBase.::GO:0005816; C:spindle pole body; IDA:PomBase. | | | | | | | | | | GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003755; F:peptidyl-prolyl cis-trans isomerase activity; IEA:UniProtKB-KW.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW. | | | | | | | | | | GO:0070816; P:phosphorylation of RNA polymerase II C-terminal domain; IMP:PomBase.::GO:0006457; P:protein folding; TAS:PomBase.::GO:0008360; P:regulation of cell shape; IMP:PomBase.::GO:0006368; P:transcription elongation from RNA polymerase II promoter; IMP:PomBase. | 415 | P0CP46 | 673 | PABP_CRYNJ Polyadenylate-binding protein, cyt... | 66 | 2.4 | 33.5 | 30 | 56 | GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. | | | | | | | | | | GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW. | | | | | | | | | | GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0051028; P:mRNA transport; IEA:UniProtKB-KW.::GO:0006417; P:regulation of translation; IEA:UniProtKB-KW. | 416 | P0CP47 | 673 | PABP_CRYNB Polyadenylate-binding protein, cyt... | 66 | 2.4 | 33.5 | 30 | 56 | GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. | | | | | | | | | | GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW. | | | | | | | | | | GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0051028; P:mRNA transport; IEA:UniProtKB-KW.::GO:0006417; P:regulation of translation; IEA:UniProtKB-KW. | 417 | Q7T3I7 | 214 | RBM38_XENLA RNA-binding protein 38 OS=Xenopus... | 53 | 0.78 | 34.3 | 38 | 57 | GO:0005829; C:cytosol; IEA:UniProtKB-SubCell.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. | | | | | | | | | | GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW. | | | | | | | | | | GO:0030154; P:cell differentiation; IEA:UniProtKB-KW.::GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0007275; P:multicellular organismal development; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW. | 418 | Q2QZL4 | 548 | U2A2B_ORYSJ Splicing factor U2af large subuni... | 46 | 0.79 | 34.7 | 37 | 57 | GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. | | | | | | | | | | GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW. | | | | | | | | | | GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW. | 419 | Q02427 | 144 | RBP1_DROME RNA-binding protein 1 OS=Drosophil... | 82 | 0.8 | 33.5 | 32 | 44 | GO:0005634; C:nucleus; IDA:FlyBase.::GO:0035327; C:transcriptionally active chromatin; IDA:FlyBase. | | | | | | | | | | GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0005515; F:protein binding; IPI:FlyBase.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW. | | | | | | | | | | GO:0006376; P:mRNA splice site selection; ISS:FlyBase.::GO:0045292; P:nuclear mRNA cis splicing, via spliceosome; IDA:FlyBase. | 420 | Q8JGR6 | 155 | NCBP2_DANRE Nuclear cap-binding protein subun... | 59 | 0.8 | 33.9 | 27 | 49 | GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. | | | | | | | | | | GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW. | | | | | | | | | | GO:0031047; P:gene silencing by RNA; IEA:UniProtKB-KW.::GO:0006370; P:mRNA capping; IEA:UniProtKB-KW.::GO:0051028; P:mRNA transport; IEA:UniProtKB-KW.::GO:0000184; P:nuclear-transcribed mRNA catabolic process, nonsense-mediated decay; IEA:UniProtKB-KW.::GO:0046833; P:positive regulation of RNA export from nucleus; ISS:UniProtKB.::GO:0006417; P:regulation of translation; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; ISS:UniProtKB.::GO:0006408; P:snRNA export from nucleus; ISS:UniProtKB. | 421 | Q54PB2 | 895 | MRD1_DICDI Multiple RNA-binding domain-contai... | 57 | 0.81 | 35 | 28 | 56 | GO:0005730; C:nucleolus; ISS:dictyBase. | | | | | | | | | | GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0030515; F:snoRNA binding; ISS:dictyBase. | | | | | | | | | | GO:0006364; P:rRNA processing; ISS:dictyBase. |