Fungal Genome Collection
University of Nebraska Lincoln
School of Biological Sciences and Center for Plant Science Innovation
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UniProt_SwissProt BLAST: Single locus
Species:
Saccharomyces cerevisiae S288C
Locus:
YDR429C
Length:
274
Number of sequences:
5887
Description:
YDR429C TIF35 SGDID:S000002837, Chr IV from 1325301-1324477, Genome Release 64-1-1, reverse complement, Verified ORF, "eIF3g subunit of the core complex of translation initiation factor 3 (eIF3), which is essential for translation; stimulates resumption of ribosomal scanning during translation reinitiation"
rec.SubjectHit LengthDescriptionAlign.LenE valueBit score% ident.  % pos.GO associations
271O02008    272   TRA2_DROVI Transformer-2 sex-determining prot...810.077     37.7     31     51
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0030154; P:cell differentiation; IEA:UniProtKB-KW.::GO:0007275; P:multicellular organismal development; IEA:UniProtKB-KW.::GO:0007548; P:sex differentiation; IEA:UniProtKB-KW.::GO:0007283; P:spermatogenesis; IEA:UniProtKB-KW.
272Q9FPJ8    387   RB45A_ARATH Polyadenylate-binding protein RBP...880.077     37.7     28     47GO:0005829; C:cytosol; IDA:TAIR.::GO:0005634; C:nucleus; ISS:UniProtKB.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0008143; F:poly(A) RNA binding; ISS:UniProtKB.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.
273O04425    747   FCA_ARATH Flowering time control protein FCA ...1060.078     38.1     33     49GO:0000785; C:chromatin; TAS:TAIR.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IDA:TAIR.
GO:0030154; P:cell differentiation; IEA:UniProtKB-KW.::GO:0031048; P:chromatin silencing by small RNA; IMP:TAIR.::GO:0009790; P:embryo development; IGI:TAIR.::GO:0009553; P:embryo sac development; IGI:TAIR.::GO:0009908; P:flower development; IEA:UniProtKB-KW.::GO:0009909; P:regulation of flower development; IMP:TAIR.
274Q6P0B1    514   CELF2_DANRE CUGBP Elav-like family member 2 O...590.078     38.1     36     59GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.
275Q9H361    631   PABP3_HUMAN Polyadenylate-binding protein 3 O...620.57     35.4     34     58GO:0005737; C:cytoplasm; NAS:UniProtKB.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0008143; F:poly(A) RNA binding; IDA:UniProtKB.
GO:0016071; P:mRNA metabolic process; NAS:UniProtKB.
276D3Z4I3    236   RBM24_MOUSE RNA-binding protein 24 OS=Mus mus...780.082     37.4     32     53GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0003730; F:mRNA 3'-UTR binding; IDA:UniProtKB.::GO:0000166; F:nucleotide binding; IEA:InterPro.
GO:0030154; P:cell differentiation; IEA:UniProtKB-KW.::GO:0043488; P:regulation of mRNA stability; IMP:UniProtKB.::GO:0010830; P:regulation of myotube differentiation; IMP:UniProtKB.
277A5DM21    631   PABP_PICGU Polyadenylate-binding protein, cyt...661     34.7     33     53GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0051028; P:mRNA transport; IEA:UniProtKB-KW.::GO:0006417; P:regulation of translation; IEA:UniProtKB-KW.
278Q6GL69    276   MK67I_XENTR MKI67 FHA domain-interacting nucl...560.088     37.4     30     57GO:0005730; C:nucleolus; IEA:UniProtKB-SubCell.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0010923; P:negative regulation of phosphatase activity; ISS:UniProtKB.
279Q8N6W0    485   CELF5_HUMAN CUGBP Elav-like family member 5 O...850.21     36.6     34     51GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.
280Q9SX80    434   R47CP_ARATH Polyadenylate-binding protein RBP...530.092     37.7     36     53GO:0010494; C:cytoplasmic stress granule; ISS:UniProtKB.::GO:0005634; C:nucleus; ISS:UniProtKB.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0008143; F:poly(A) RNA binding; ISS:UniProtKB.
GO:0034605; P:cellular response to heat; ISS:UniProtKB.::GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.
281Q9BX46    236   RBM24_HUMAN RNA-binding protein 24 OS=Homo sa...780.094     37     32     53GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0003730; F:mRNA 3'-UTR binding; ISS:UniProtKB.::GO:0000166; F:nucleotide binding; IEA:InterPro.
GO:0030154; P:cell differentiation; IEA:UniProtKB-KW.::GO:0043488; P:regulation of mRNA stability; ISS:UniProtKB.::GO:0010830; P:regulation of myotube differentiation; ISS:UniProtKB.
282Q3SZM1    296   MK67I_BOVIN MKI67 FHA domain-interacting nucl...560.094     37.4     32     55GO:0005730; C:nucleolus; IEA:UniProtKB-SubCell.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0010923; P:negative regulation of phosphatase activity; ISS:UniProtKB.
283Q5F3T7    489   CELF1_CHICK CUGBP Elav-like family member 1 O...590.095     37.7     34     59GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.
284P45429    282   SNRPA_XENLA U1 small nuclear ribonucleoprotei...780.097     37.4     28     50GO:0005681; C:spliceosomal complex; IEA:UniProtKB-KW.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0017069; F:snRNA binding; IEA:InterPro.
GO:0000398; P:nuclear mRNA splicing, via spliceosome; IEA:InterPro.
285Q9IBD0    501   CELF1_DANRE CUGBP Elav-like family member 1 O...600.1     37.7     33     63GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.
286Q9CX86    305   ROA0_MOUSE Heterogeneous nuclear ribonucleopr...620.58     35     32     55GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.::GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW.
GO:0017091; F:AU-rich element binding; IDA:UniProtKB.::GO:0000166; F:nucleotide binding; IEA:InterPro.
GO:0070935; P:3'-UTR-mediated mRNA stabilization; IDA:UniProtKB.::GO:0006954; P:inflammatory response; IDA:UniProtKB.::GO:0032496; P:response to lipopolysaccharide; IDA:UniProtKB.
287Q03250    176   GRP7_ARATH Glycine-rich RNA-binding protein 7...540.1     36.6     30     57GO:0009507; C:chloroplast; IDA:TAIR.::GO:0005829; C:cytosol; IDA:TAIR.::GO:0005634; C:nucleus; IDA:TAIR.::GO:0005777; C:peroxisome; IDA:TAIR.::GO:0009506; C:plasmodesma; IDA:TAIR.
GO:0003690; F:double-stranded DNA binding; IDA:TAIR.::GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IDA:TAIR.::GO:0003697; F:single-stranded DNA binding; IDA:TAIR.
GO:0007623; P:circadian rhythm; IEP:TAIR.::GO:0032508; P:DNA duplex unwinding; IDA:TAIR.::GO:0045087; P:innate immune response; IDA:TAIR.::GO:0006406; P:mRNA export from nucleus; IMP:TAIR.::GO:0010119; P:regulation of stomatal movement; IMP:TAIR.::GO:0046686; P:response to cadmium ion; IEP:TAIR.::GO:0009409; P:response to cold; IGI:TAIR.::GO:0009651; P:response to salt stress; IEP:TAIR.::GO:0010043; P:response to zinc ion; IEP:TAIR.::GO:0010501; P:RNA secondary structure unwinding; IDA:TAIR.::GO:0010228; P:vegetative to reproductive phase transition of meristem; IMP:TAIR.
288Q15415    496   RBY1F_HUMAN RNA-binding motif protein, Y chro...840.11     37.4     30     51GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; NAS:UniProtKB.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.::GO:0007283; P:spermatogenesis; NAS:UniProtKB.
289Q13151    305   ROA0_HUMAN Heterogeneous nuclear ribonucleopr...621.7     33.5     31     55GO:0030530; C:heterogeneous nuclear ribonucleoprotein complex; TAS:ProtInc.::GO:0005654; C:nucleoplasm; TAS:Reactome.
GO:0017091; F:AU-rich element binding; IDA:UniProtKB.::GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0019901; F:protein kinase binding; IPI:UniProtKB.
GO:0070935; P:3'-UTR-mediated mRNA stabilization; ISS:UniProtKB.::GO:0006954; P:inflammatory response; ISS:UniProtKB.::GO:0000398; P:nuclear mRNA splicing, via spliceosome; TAS:Reactome.::GO:0032496; P:response to lipopolysaccharide; ISS:UniProtKB.
290Q9LEB4    409   RBP45_NICPL Polyadenylate-binding protein RBP...796.6     32     27     44GO:0005634; C:nucleus; IDA:UniProtKB.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0008143; F:poly(A) RNA binding; IDA:UniProtKB.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.
291Q7SYS2    278   MK67I_XENLA MKI67 FHA domain-interacting nucl...620.11     37     27     55GO:0005730; C:nucleolus; IEA:UniProtKB-SubCell.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0010923; P:negative regulation of phosphatase activity; ISS:UniProtKB.
292P19682    276   ROC3_NICSY 28 kDa ribonucleoprotein, chloropl...491.3     33.9     35     55GO:0009507; C:chloroplast; IEA:UniProtKB-SubCell.::GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.
293Q91VE6    317   MK67I_MOUSE MKI67 FHA domain-interacting nucl...530.12     37     36     55GO:0005730; C:nucleolus; IEA:UniProtKB-SubCell.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0010923; P:negative regulation of phosphatase activity; ISS:UniProtKB.
294Q96J87    481   CELF6_HUMAN CUGBP Elav-like family member 6 O...451.7     33.9     42     60GO:0005737; C:cytoplasm; NAS:UniProtKB.::GO:0005634; C:nucleus; NAS:UniProtKB.
GO:0003676; F:nucleic acid binding; IEA:InterPro.::GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; NAS:UniProtKB.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0000381; P:regulation of alternative nuclear mRNA splicing, via spliceosome; IDA:UniProtKB.
295Q10B98    312   C3H25_ORYSJ Zinc finger CCCH domain-containin...600.13     37     35     58
GO:0003677; F:DNA binding; IEA:UniProtKB-KW.::GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.::GO:0008270; F:zinc ion binding; IEA:InterPro.
296Q7TN33    460   CELF6_MOUSE CUGBP Elav-like family member 6 O...455.1     32.3     40     60GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.
297Q05966    169   GRP10_BRANA Glycine-rich RNA-binding protein ...480.13     36.2     31     56
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
298Q8IUH3    476   RBM45_HUMAN RNA-binding protein 45 OS=Homo sa...1090.2     36.6     29     47GO:0005737; C:cytoplasm; IDA:UniProtKB.::GO:0005634; C:nucleus; IDA:UniProtKB.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IDA:UniProtKB.
GO:0030154; P:cell differentiation; IEA:UniProtKB-KW.::GO:0007399; P:nervous system development; ISS:UniProtKB.
299Q9SAB3    405   RB45B_ARATH Polyadenylate-binding protein RBP...840.13     37     27     48GO:0005634; C:nucleus; ISS:UniProtKB.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0008143; F:poly(A) RNA binding; ISS:UniProtKB.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0010193; P:response to ozone; IEP:TAIR.::GO:0006950; P:response to stress; IEA:UniProtKB-KW.
300Q5R723    301   PPIE_PONAB Peptidyl-prolyl cis-trans isomeras...840.13     37     30     46GO:0005681; C:spliceosomal complex; IEA:UniProtKB-KW.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003755; F:peptidyl-prolyl cis-trans isomerase activity; IEA:UniProtKB-KW.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0006457; P:protein folding; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.
301Q9UNP9    301   PPIE_HUMAN Peptidyl-prolyl cis-trans isomeras...840.13     37     30     46GO:0071013; C:catalytic step 2 spliceosome; IDA:UniProtKB.
GO:0016018; F:cyclosporin A binding; TAS:ProtInc.::GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003755; F:peptidyl-prolyl cis-trans isomerase activity; TAS:UniProtKB.::GO:0005515; F:protein binding; IPI:UniProtKB.::GO:0003723; F:RNA binding; TAS:UniProtKB.
GO:0000398; P:nuclear mRNA splicing, via spliceosome; IC:UniProtKB.::GO:0006457; P:protein folding; IEA:UniProtKB-KW.::GO:0006355; P:regulation of transcription, DNA-dependent; IMP:UniProtKB.
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