Fungal Genome Collection
University of Nebraska Lincoln
School of Biological Sciences and Center for Plant Science Innovation
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UniProt_SwissProt BLAST: Single locus
Species:
Saccharomyces cerevisiae S288C
Locus:
YDR429C
Length:
274
Number of sequences:
5887
Description:
YDR429C TIF35 SGDID:S000002837, Chr IV from 1325301-1324477, Genome Release 64-1-1, reverse complement, Verified ORF, "eIF3g subunit of the core complex of translation initiation factor 3 (eIF3), which is essential for translation; stimulates resumption of ribosomal scanning during translation reinitiation"
rec.SubjectHit LengthDescriptionAlign.LenE valueBit score% ident.  % pos.GO associations
181Q9Z0H4    508   CELF2_MOUSE CUGBP Elav-like family member 2 O...930.013     40.4     31     52GO:0005737; C:cytoplasm; IDA:MGI.::GO:0005634; C:nucleus; IDA:MGI.::GO:0005625; C:soluble fraction; IDA:MGI.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006376; P:mRNA splice site selection; IDA:MGI.
182Q16560    246   U1SBP_HUMAN U11/U12 small nuclear ribonucleop...680.014     39.7     32     54GO:0005689; C:U12-type spliceosomal complex; IDA:HGNC.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IC:HGNC.
183Q7ZXE2    536   CELF2_XENLA CUGBP Elav-like family member 2 O...930.014     40.4     31     52GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.
184A4IIM2    513   CELF2_XENTR CUGBP Elav-like family member 2 O...930.014     40.4     31     52GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.
185O09032    373   ELAV4_RAT ELAV-like protein 4 OS=Rattus norve...700.51     35     30     53
GO:0017091; F:AU-rich element binding; ISS:UniProtKB.::GO:0000166; F:nucleotide binding; IEA:InterPro.
186Q61701    385   ELAV4_MOUSE ELAV-like protein 4 OS=Mus muscul...700.54     35     30     53
GO:0017091; F:AU-rich element binding; ISS:UniProtKB.::GO:0000166; F:nucleotide binding; IEA:InterPro.
187O17310    324   SXL_MUSDO Sex-lethal homolog OS=Musca domesti...460.25     36.2     35     67GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
188Q03878    157   GRP1_DAUCA Glycine-rich RNA-binding protein O...480.015     38.9     33     56
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
189P26378    380   ELAV4_HUMAN ELAV-like protein 4 OS=Homo sapie...700.56     35     30     53
GO:0017091; F:AU-rich element binding; IDA:UniProtKB.::GO:0003730; F:mRNA 3'-UTR binding; TAS:ProtInc.::GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006397; P:mRNA processing; TAS:ProtInc.
190Q60900    367   ELAV3_MOUSE ELAV-like protein 3 OS=Mus muscul...830.28     36.2     25     48
GO:0017091; F:AU-rich element binding; IDA:UniProtKB.::GO:0000166; F:nucleotide binding; IEA:InterPro.
GO:0030154; P:cell differentiation; IEA:UniProtKB-KW.::GO:0007399; P:nervous system development; IEA:UniProtKB-KW.
191Q44554    103   RBPB_NOSS1 Putative RNA-binding protein rbpB ...570.016     37.7     33     54
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
192Q6PFR5    281   TRA2A_MOUSE Transformer-2 protein homolog alp...860.017     39.7     35     52GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0042802; F:identical protein binding; IPI:IntAct.::GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.
193Q14576    367   ELAV3_HUMAN ELAV-like protein 3 OS=Homo sapie...830.28     36.2     25     48
GO:0017091; F:AU-rich element binding; IDA:UniProtKB.::GO:0000166; F:nucleotide binding; IEA:InterPro.
GO:0030154; P:cell differentiation; IEA:UniProtKB-KW.::GO:0007399; P:nervous system development; IEA:UniProtKB-KW.
194A0JM51    486   CELF5_XENTR CUGBP Elav-like family member 5 O...456.4     32     42     56GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.
195Q13595    282   TRA2A_HUMAN Transformer-2 protein homolog alp...860.017     39.7     35     52GO:0005634; C:nucleus; IDA:UniProtKB.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0000398; P:nuclear mRNA splicing, via spliceosome; IDA:UniProtKB.
196P70318    392   TIAR_MOUSE Nucleolysin TIAR OS=Mus musculus (...660.017     40     33     56GO:0010494; C:cytoplasmic stress granule; IDA:UniProtKB.::GO:0005634; C:nucleus; IDA:UniProtKB.
GO:0017091; F:AU-rich element binding; IDA:MGI.::GO:0000166; F:nucleotide binding; IEA:InterPro.
GO:0006915; P:apoptotic process; IEA:UniProtKB-KW.::GO:0007281; P:germ cell development; IMP:MGI.::GO:0008284; P:positive regulation of cell proliferation; IMP:MGI.::GO:0017145; P:stem cell division; IMP:MGI.
197Q98SP8    629   EPABA_XENLA Embryonic polyadenylate-binding p...842.2     33.5     27     52GO:0005737; C:cytoplasm; IDA:UniProtKB.
GO:0031370; F:eukaryotic initiation factor 4G binding; IPI:UniProtKB.::GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0008143; F:poly(A) RNA binding; IDA:UniProtKB.::GO:0043621; F:protein self-association; IPI:UniProtKB.
GO:0043009; P:chordate embryonic development; IEP:UniProtKB.::GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0048255; P:mRNA stabilization; IDA:UniProtKB.::GO:0060212; P:negative regulation of nuclear-transcribed mRNA poly(A) tail shortening; IDA:UniProtKB.::GO:0006412; P:translation; IEA:UniProtKB-KW.
198P52299    153   NCBP2_XENLA Nuclear cap-binding protein subun...770.02     38.5     27     49GO:0005737; C:cytoplasm; ISS:UniProtKB.::GO:0005845; C:mRNA cap binding complex; ISS:UniProtKB.::GO:0005654; C:nucleoplasm; ISS:UniProtKB.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0000340; F:RNA 7-methylguanosine cap binding; ISS:UniProtKB.
GO:0031047; P:gene silencing by RNA; IEA:UniProtKB-KW.::GO:0006370; P:mRNA capping; ISS:UniProtKB.::GO:0051028; P:mRNA transport; IEA:UniProtKB-KW.::GO:0000184; P:nuclear-transcribed mRNA catabolic process, nonsense-mediated decay; ISS:UniProtKB.::GO:0046833; P:positive regulation of RNA export from nucleus; IDA:UniProtKB.::GO:0006446; P:regulation of translational initiation; ISS:UniProtKB.::GO:0008380; P:RNA splicing; IDA:UniProtKB.::GO:0006408; P:snRNA export from nucleus; IDA:UniProtKB.
199Q57014    101   RBPA_SYNY3 Putative RNA-binding protein rbpA ...570.02     37.4     32     54
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
200Q5U1W5    244   U1SBP_RAT U11/U12 small nuclear ribonucleopro...680.021     39.3     32     53
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.
201P21187    634   PABP_DROME Polyadenylate-binding protein OS=D...803.3     32.7     26     51GO:0071013; C:catalytic step 2 spliceosome; IDA:FlyBase.::GO:0005811; C:lipid particle; IDA:FlyBase.::GO:0005875; C:microtubule associated complex; IDA:FlyBase.::GO:0071011; C:precatalytic spliceosome; IDA:FlyBase.
GO:0003730; F:mRNA 3'-UTR binding; IDA:FlyBase.::GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0008143; F:poly(A) RNA binding; ISS:FlyBase.::GO:0005515; F:protein binding; IPI:FlyBase.
GO:0009953; P:dorsal/ventral pattern formation; IMP:FlyBase.::GO:0007140; P:male meiosis; IMP:FlyBase.::GO:0007112; P:male meiosis cytokinesis; IMP:FlyBase.::GO:0000398; P:nuclear mRNA splicing, via spliceosome; IC:FlyBase.::GO:0048599; P:oocyte development; IMP:FlyBase.::GO:0045727; P:positive regulation of translation; IGI:FlyBase.::GO:0007289; P:spermatid nucleus differentiation; IMP:FlyBase.::GO:0007268; P:synaptic transmission; IMP:FlyBase.
202P0CB38    370   PAB4L_HUMAN Polyadenylate-binding protein 4-l...491.4     33.9     35     59
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
203P0C8Z4    992   RMXL3_PANTR RNA-binding motif protein, X-link...670.024     39.7     37     58
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
204O15042    1029   SR140_HUMAN U2 snRNP-associated SURP motif-co...1430.025     39.7     24     44GO:0005634; C:nucleus; IDA:UniProtKB.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0005515; F:protein binding; IPI:UniProtKB.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006396; P:RNA processing; IEA:InterPro.
205P30352    221   SRSF2_CHICK Serine/arginine-rich splicing fac...800.026     38.9     29     51GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.
206Q13310    644   PABP4_HUMAN Polyadenylate-binding protein 4 O...840.54     35.4     30     50GO:0005737; C:cytoplasm; IDA:MGI.::GO:0030529; C:ribonucleoprotein complex; IDA:UniProtKB.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0008143; F:poly(A) RNA binding; IDA:MGI.::GO:0008266; F:poly(U) RNA binding; IDA:MGI.::GO:0005515; F:protein binding; IPI:IntAct.::GO:0003723; F:RNA binding; IEA:InterPro.
GO:0007596; P:blood coagulation; TAS:ProtInc.::GO:0006401; P:RNA catabolic process; TAS:ProtInc.::GO:0006396; P:RNA processing; TAS:ProtInc.::GO:0006412; P:translation; TAS:ProtInc.
207Q9I8B3    224   RB24B_XENLA RNA-binding protein 24-B OS=Xenop...780.027     38.9     32     54GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0003730; F:mRNA 3'-UTR binding; ISS:UniProtKB.::GO:0000166; F:nucleotide binding; IEA:InterPro.
GO:0030154; P:cell differentiation; IEA:UniProtKB-KW.::GO:0043488; P:regulation of mRNA stability; ISS:UniProtKB.::GO:0010830; P:regulation of myotube differentiation; ISS:UniProtKB.
208P40567    111   MSL1_YEAST U2 small nuclear ribonucleoprotein...820.028     37.4     34     49GO:0005686; C:U2 snRNP; TAS:SGD.::GO:0071004; C:U2-type prespliceosome; IDA:SGD.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0030620; F:U2 snRNA binding; IPI:SGD.
GO:0000398; P:nuclear mRNA splicing, via spliceosome; IMP:SGD.
209Q8N7X1    1067   RMXL3_HUMAN RNA-binding motif protein, X-link...790.028     39.7     37     54
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
210Q9D384    244   U1SBP_MOUSE U11/U12 small nuclear ribonucleop...680.029     38.9     32     53GO:0005689; C:U12-type spliceosomal complex; ISS:HGNC.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.
211P49311    169   GRP2_SINAL Glycine-rich RNA-binding protein G...540.032     38.1     35     57GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
records
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