Fungal Genome Collection
University of Nebraska Lincoln
School of Biological Sciences and Center for Plant Science Innovation
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UniProt_SwissProt BLAST: Single locus
Species:
Saccharomyces cerevisiae S288C
Locus:
YDR404C
Length:
171
Number of sequences:
5887
Description:
YDR404C RPB7 SGDID:S000002812, Chr IV from 1277169-1276654, Genome Release 64-1-1, reverse complement, Verified ORF, "RNA polymerase II subunit B16; forms two subunit dissociable complex with Rpb4p; involved in recruitment of 3'-end processing factors to transcribing RNA polymerase II complex and in export of mRNA to cytoplasm under stress conditions; also involved in translation initiation"
rec.SubjectHit LengthDescriptionAlign.LenE valueBit score% ident.  % pos.GO associations
1P34087    171   RPB7_YEAST DNA-directed RNA polymerase II sub...1711e-123     352     100     100GO:0000932; C:cytoplasmic mRNA processing body; IDA:SGD.::GO:0005665; C:DNA-directed RNA polymerase II, core complex; IDA:SGD.
GO:0003899; F:DNA-directed RNA polymerase activity; IEA:UniProtKB-KW.::GO:0003697; F:single-stranded DNA binding; IDA:SGD.::GO:0003727; F:single-stranded RNA binding; IDA:SGD.::GO:0031369; F:translation initiation factor binding; IPI:SGD.
GO:0000291; P:nuclear-transcribed mRNA catabolic process, exonucleolytic; IGI:SGD.::GO:0060213; P:positive regulation of nuclear-transcribed mRNA poly(A) tail shortening; IMP:SGD.::GO:0045948; P:positive regulation of translational initiation; IMP:SGD.::GO:0006367; P:transcription initiation from RNA polymerase II promoter; IDA:SGD.
2O14459    172   RPB7_SCHPO DNA-directed RNA polymerase II sub...1702e-66     207     53     75GO:0005829; C:cytosol; IDA:PomBase.::GO:0016591; C:DNA-directed RNA polymerase II, holoenzyme; IC:PomBase.
GO:0003899; F:DNA-directed RNA polymerase activity; IEA:UniProtKB-KW.::GO:0005515; F:protein binding; IPI:IntAct.::GO:0003723; F:RNA binding; IEA:InterPro.
GO:0031123; P:RNA 3'-end processing; IPI:PomBase.::GO:0006367; P:transcription initiation from RNA polymerase II promoter; TAS:PomBase.
3P62489    172   RPB7_RAT DNA-directed RNA polymerase II subun...1732e-43     148     43     62GO:0005665; C:DNA-directed RNA polymerase II, core complex; ISS:UniProtKB.
GO:0003899; F:DNA-directed RNA polymerase activity; IEA:UniProtKB-KW.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006915; P:apoptotic process; IEP:RGD.::GO:0006366; P:transcription from RNA polymerase II promoter; ISS:UniProtKB.
4P62488    172   RPB7_MOUSE DNA-directed RNA polymerase II sub...1732e-43     148     43     62GO:0005665; C:DNA-directed RNA polymerase II, core complex; ISS:UniProtKB.
GO:0003899; F:DNA-directed RNA polymerase activity; IEA:UniProtKB-KW.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006366; P:transcription from RNA polymerase II promoter; ISS:UniProtKB.
5P62487    172   RPB7_HUMAN DNA-directed RNA polymerase II sub...1732e-43     148     43     62GO:0005665; C:DNA-directed RNA polymerase II, core complex; IDA:UniProtKB.
GO:0003899; F:DNA-directed RNA polymerase activity; IEA:UniProtKB-KW.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006370; P:mRNA capping; TAS:Reactome.::GO:0000398; P:nuclear mRNA splicing, via spliceosome; TAS:Reactome.::GO:0050434; P:positive regulation of viral transcription; TAS:Reactome.::GO:0006468; P:protein phosphorylation; IDA:GOC.::GO:0006368; P:transcription elongation from RNA polymerase II promoter; TAS:Reactome.::GO:0006367; P:transcription initiation from RNA polymerase II promoter; TAS:Reactome.::GO:0006283; P:transcription-coupled nucleotide-excision repair; TAS:Reactome.::GO:0016032; P:viral reproduction; TAS:Reactome.
6Q5E9B8    172   RPB7_BOVIN DNA-directed RNA polymerase II sub...1732e-43     148     43     62GO:0005665; C:DNA-directed RNA polymerase II, core complex; ISS:UniProtKB.
GO:0003899; F:DNA-directed RNA polymerase activity; IEA:UniProtKB-KW.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006366; P:transcription from RNA polymerase II promoter; ISS:UniProtKB.
7Q7ZW41    172   RPB7_DANRE DNA-directed RNA polymerase II sub...1734e-43     147     42     62GO:0005665; C:DNA-directed RNA polymerase II, core complex; ISS:UniProtKB.
GO:0003899; F:DNA-directed RNA polymerase activity; IEA:UniProtKB-KW.::GO:0003723; F:RNA binding; IEA:InterPro.
GO:0006468; P:protein phosphorylation; ISS:GOC.::GO:0006366; P:transcription from RNA polymerase II promoter; ISS:UniProtKB.
8Q54P04    172   RPB7_DICDI DNA-directed RNA polymerase II sub...1731e-39     138     39     61GO:0016591; C:DNA-directed RNA polymerase II, holoenzyme; ISS:dictyBase.
GO:0003899; F:DNA-directed RNA polymerase activity; IGI:dictyBase.::GO:0003723; F:RNA binding; IEA:InterPro.::GO:0003697; F:single-stranded DNA binding; ISS:dictyBase.
GO:0006366; P:transcription from RNA polymerase II promoter; IGI:dictyBase.
9P38421    176   RPB7_ARATH DNA-directed RNA polymerase II sub...1732e-39     138     40     65GO:0005665; C:DNA-directed RNA polymerase II, core complex; IPI:TAIR.
GO:0003899; F:DNA-directed RNA polymerase activity; IEA:UniProtKB-KW.::GO:0003723; F:RNA binding; IEA:InterPro.
10P46279    176   RPB7_SOYBN DNA-directed RNA polymerase II sub...1732e-38     135     39     64GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0003899; F:DNA-directed RNA polymerase activity; IEA:UniProtKB-KW.::GO:0003723; F:RNA binding; IEA:InterPro.
11O94285    203   RPC8_SCHPO DNA-directed RNA polymerase III su...1220.00000000000003     71.2     33     52GO:0005829; C:cytosol; IDA:PomBase.::GO:0005666; C:DNA-directed RNA polymerase III complex; IDA:PomBase.
GO:0003677; F:DNA binding; IEA:InterPro.::GO:0003899; F:DNA-directed RNA polymerase activity; IMP:PomBase.
GO:0006384; P:transcription initiation from RNA polymerase III promoter; IMP:PomBase.
12P35718    212   RPC8_YEAST DNA-directed RNA polymerase III su...1080.00000000002     62.8     30     56GO:0005666; C:DNA-directed RNA polymerase III complex; IDA:SGD.
GO:0003677; F:DNA binding; IEA:InterPro.::GO:0003899; F:DNA-directed RNA polymerase activity; IEA:UniProtKB-KW.::GO:0005515; F:protein binding; IPI:IntAct.
GO:0006384; P:transcription initiation from RNA polymerase III promoter; IMP:SGD.::GO:0042797; P:tRNA transcription from RNA polymerase III promoter; IDA:SGD.
13Q57840    187   RPOE1_METJA DNA-directed RNA polymerase subun...1480.0000000007     58.2     25     51
GO:0003677; F:DNA binding; IEA:InterPro.::GO:0003899; F:DNA-directed RNA polymerase activity; IEA:UniProtKB-KW.::GO:0003723; F:RNA binding; IEA:InterPro.
14Q557J3    252   RPC8_DICDI DNA-directed RNA polymerase III su...1530.000002     49.7     25     47GO:0005666; C:DNA-directed RNA polymerase III complex; ISS:dictyBase.
GO:0003899; F:DNA-directed RNA polymerase activity; ISS:dictyBase.
GO:0006384; P:transcription initiation from RNA polymerase III promoter; ISS:dictyBase.
15Q9Y535    204   RPC8_HUMAN DNA-directed RNA polymerase III su...1040.000002     49.3     25     48GO:0005666; C:DNA-directed RNA polymerase III complex; IDA:UniProtKB.
GO:0003677; F:DNA binding; IEA:InterPro.::GO:0003899; F:DNA-directed RNA polymerase activity; IDA:UniProtKB.
GO:0045087; P:innate immune response; IEA:UniProtKB-KW.::GO:0009615; P:response to virus; IEA:UniProtKB-KW.::GO:0006386; P:termination of RNA polymerase III transcription; TAS:Reactome.::GO:0006385; P:transcription elongation from RNA polymerase III promoter; TAS:Reactome.
16Q9D2C6    204   RPC8_MOUSE DNA-directed RNA polymerase III su...1040.000003     48.5     25     48GO:0005666; C:DNA-directed RNA polymerase III complex; ISS:UniProtKB.
GO:0003677; F:DNA binding; IEA:InterPro.::GO:0003899; F:DNA-directed RNA polymerase activity; ISS:UniProtKB.
GO:0045087; P:innate immune response; IEA:UniProtKB-KW.::GO:0009615; P:response to virus; IEA:UniProtKB-KW.::GO:0006383; P:transcription from RNA polymerase III promoter; ISS:UniProtKB.
17Q2T9X1    204   RPC8_BOVIN DNA-directed RNA polymerase III su...1040.000004     48.5     25     48GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0003677; F:DNA binding; IEA:InterPro.::GO:0003899; F:DNA-directed RNA polymerase activity; IEA:UniProtKB-KW.
GO:0045087; P:innate immune response; IEA:UniProtKB-KW.::GO:0009615; P:response to virus; IEA:UniProtKB-KW.
18P39466    183   RPOE_SULAC DNA-directed RNA polymerase subuni...1630.0006     42     22     43
GO:0003677; F:DNA binding; IEA:InterPro.::GO:0003899; F:DNA-directed RNA polymerase activity; IEA:UniProtKB-KW.::GO:0003723; F:RNA binding; IEA:InterPro.
19Q55FA4    356   RPA43_DICDI Probable DNA-directed RNA polymer...780.11     36.2     26     53GO:0005736; C:DNA-directed RNA polymerase I complex; ISS:dictyBase.
GO:0003899; F:DNA-directed RNA polymerase activity; ISS:dictyBase.::GO:0003723; F:RNA binding; IEA:InterPro.
GO:0006360; P:transcription from RNA polymerase I promoter; ISS:dictyBase.
20B7J0Q1    722   PNP_BORBZ Polyribonucleotide nucleotidyltrans...539.1     30.4     28     57GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0000175; F:3'-5'-exoribonuclease activity; IEA:InterPro.::GO:0004654; F:polyribonucleotide nucleotidyltransferase activity; IEA:EC.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006402; P:mRNA catabolic process; IEA:InterPro.::GO:0006396; P:RNA processing; IEA:InterPro.
21O51745    716   PNP_BORBU Polyribonucleotide nucleotidyltrans...539.6     30.4     28     57GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0000175; F:3'-5'-exoribonuclease activity; IEA:InterPro.::GO:0004654; F:polyribonucleotide nucleotidyltransferase activity; IEA:EC.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006402; P:mRNA catabolic process; IEA:InterPro.::GO:0006396; P:RNA processing; IEA:InterPro.
records
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