rec. | Subject | Hit Length | Description | Align.Len | E value | Bit score | % ident. | % pos. | GO associations |
31 | P62306 | 86 | RUXF_HUMAN Small nuclear ribonucleoprotein F ... | 70 | 0.000002 | 45.8 | 36 | 56 | GO:0071013; C:catalytic step 2 spliceosome; IDA:UniProtKB.::GO:0005829; C:cytosol; TAS:Reactome.::GO:0005654; C:nucleoplasm; TAS:Reactome.::GO:0005689; C:U12-type spliceosomal complex; IDA:UniProtKB.::GO:0005683; C:U7 snRNP; IDA:UniProtKB. | | | | | | | | | | GO:0003723; F:RNA binding; IMP:UniProtKB. | | | | | | | | | | GO:0008334; P:histone mRNA metabolic process; TAS:Reactome.::GO:0034660; P:ncRNA metabolic process; TAS:Reactome.::GO:0000387; P:spliceosomal snRNP assembly; TAS:Reactome.::GO:0006369; P:termination of RNA polymerase II transcription; TAS:Reactome. | 32 | Q3T0Z8 | 86 | RUXF_BOVIN Small nuclear ribonucleoprotein F ... | 70 | 0.000002 | 45.8 | 36 | 56 | GO:0005683; C:U7 snRNP; ISS:UniProtKB. | | | | | | | | | | GO:0003723; F:RNA binding; IEA:UniProtKB-KW. | | | | | | | | | | GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW. | 33 | Q9SUM2 | 88 | RUXF_ARATH Probable small nuclear ribonucleop... | 67 | 0.000005 | 44.3 | 36 | 61 | GO:0005829; C:cytosol; IDA:TAIR.::GO:0005730; C:nucleolus; IDA:TAIR.::GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW. | | | | | | | | | | GO:0003723; F:RNA binding; IEA:UniProtKB-KW. | | | | | | | | | | GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW. | 34 | P34659 | 85 | RUXF_CAEEL Probable small nuclear ribonucleop... | 68 | 0.00002 | 42.4 | 32 | 56 | GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.::GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW. | | | | | | | | | | GO:0005515; F:protein binding; IPI:IntAct.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW. | | | | | | | | | | GO:0006915; P:apoptotic process; IMP:WormBase.::GO:0009792; P:embryo development ending in birth or egg hatching; IMP:WormBase.::GO:0040007; P:growth; IMP:WormBase.::GO:0040039; P:inductive cell migration; IMP:WormBase.::GO:0018996; P:molting cycle, collagen and cuticulin-based cuticle; IMP:WormBase.::GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0040027; P:negative regulation of vulval development; IMP:WormBase.::GO:0002119; P:nematode larval development; IMP:WormBase.::GO:0006898; P:receptor-mediated endocytosis; IMP:WormBase.::GO:0000003; P:reproduction; IMP:WormBase.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.::GO:0032940; P:secretion by cell; IMP:WormBase. | 35 | Q54XP2 | 91 | RUXF_DICDI Small nuclear ribonucleoprotein F ... | 77 | 0.00003 | 42 | 35 | 55 | GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.::GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW. | | | | | | | | | | GO:0003723; F:RNA binding; IEA:UniProtKB-KW. | | | | | | | | | | GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW. | 36 | O59734 | 78 | RUXF_SCHPO Small nuclear ribonucleoprotein F ... | 73 | 0.00004 | 42 | 32 | 52 | GO:0005829; C:cytosol; IDA:PomBase.::GO:0005681; C:spliceosomal complex; IC:PomBase.::GO:0005685; C:U1 snRNP; IDA:PomBase.::GO:0046540; C:U4/U6 x U5 tri-snRNP complex; ISS:PomBase. | | | | | | | | | | GO:0003723; F:RNA binding; IEA:UniProtKB-KW. | | | | | | | | | | GO:0000395; P:nuclear mRNA 5'-splice site recognition; IC:PomBase. | 37 | Q24297 | 88 | RUXF_DROME Small nuclear ribonucleoprotein F ... | 67 | 0.00004 | 41.6 | 39 | 55 | GO:0071013; C:catalytic step 2 spliceosome; IDA:FlyBase.::GO:0071011; C:precatalytic spliceosome; IDA:FlyBase.::GO:0030532; C:small nuclear ribonucleoprotein complex; NAS:UniProtKB. | | | | | | | | | | GO:0003723; F:RNA binding; IEA:UniProtKB-KW. | | | | | | | | | | GO:0007052; P:mitotic spindle organization; IMP:FlyBase.::GO:0000398; P:nuclear mRNA splicing, via spliceosome; NAS:UniProtKB. | 38 | Q9P5Z8 | 90 | RUXF_NEUCR Probable small nuclear ribonucleop... | 70 | 0.0003 | 39.3 | 36 | 50 | GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.::GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW. | | | | | | | | | | GO:0003723; F:RNA binding; IEA:UniProtKB-KW. | | | | | | | | | | GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW. | 39 | Q54TF6 | 117 | LSM2_DICDI Probable U6 snRNA-associated Sm-li... | 67 | 0.002 | 37.7 | 30 | 55 | GO:0005730; C:nucleolus; ISS:dictyBase.::GO:0005732; C:small nucleolar ribonucleoprotein complex; ISS:dictyBase.::GO:0046540; C:U4/U6 x U5 tri-snRNP complex; ISS:dictyBase.::GO:0005688; C:U6 snRNP; ISS:dictyBase. | | | | | | | | | | GO:0003723; F:RNA binding; IEA:UniProtKB-KW. | | | | | | | | | | GO:0006402; P:mRNA catabolic process; ISS:dictyBase.::GO:0000398; P:nuclear mRNA splicing, via spliceosome; ISS:dictyBase. | 40 | Q97BU5 | 83 | RUXX_THEVO Putative snRNP Sm-like protein OS=... | 72 | 0.004 | 35.8 | 28 | 51 | GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW. | | | | | | | | | | | | | | | | | | | | | 41 | O35900 | 95 | LSM2_MOUSE U6 snRNA-associated Sm-like protei... | 68 | 0.006 | 35.8 | 29 | 51 | GO:0005681; C:spliceosomal complex; IEA:UniProtKB-KW. | | | | | | | | | | GO:0019901; F:protein kinase binding; IDA:MGI.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW. | | | | | | | | | | GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW. | 42 | Q9Y333 | 95 | LSM2_HUMAN U6 snRNA-associated Sm-like protei... | 68 | 0.006 | 35.8 | 29 | 51 | GO:0071013; C:catalytic step 2 spliceosome; IDA:UniProtKB.::GO:0005829; C:cytosol; TAS:Reactome.::GO:0005654; C:nucleoplasm; TAS:Reactome. | | | | | | | | | | GO:0017070; F:U6 snRNA binding; NAS:UniProtKB. | | | | | | | | | | GO:0043928; P:exonucleolytic nuclear-transcribed mRNA catabolic process involved in deadenylation-dependent decay; TAS:Reactome.::GO:0000398; P:nuclear mRNA splicing, via spliceosome; NAS:UniProtKB. | 43 | P57670 | 83 | RUXX_THEAC Putative snRNP Sm-like protein OS=... | 52 | 0.011 | 34.7 | 35 | 56 | GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW. | | | | | | | | | | | | | | | | | | | | | 44 | Q8SQK1 | 94 | LSM2_ENCCU Probable U6 snRNA-associated Sm-li... | 36 | 0.066 | 33.1 | 44 | 64 | GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.::GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW. | | | | | | | | | | GO:0003723; F:RNA binding; IEA:UniProtKB-KW. | | | | | | | | | | GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW. | 45 | P40070 | 187 | LSM4_YEAST U6 snRNA-associated Sm-like protei... | 77 | 0.1 | 33.5 | 29 | 58 | GO:0000932; C:cytoplasmic mRNA processing body; IDA:SGD.::GO:0005730; C:nucleolus; IDA:SGD.::GO:0005732; C:small nucleolar ribonucleoprotein complex; IPI:SGD.::GO:0046540; C:U4/U6 x U5 tri-snRNP complex; IDA:SGD.::GO:0005688; C:U6 snRNP; IDA:SGD. | | | | | | | | | | GO:0005515; F:protein binding; IPI:IntAct.::GO:0017070; F:U6 snRNA binding; IMP:SGD. | | | | | | | | | | GO:0033962; P:cytoplasmic mRNA processing body assembly; IMP:SGD.::GO:0000398; P:nuclear mRNA splicing, via spliceosome; IPI:SGD.::GO:0000956; P:nuclear-transcribed mRNA catabolic process; TAS:SGD.::GO:0006364; P:rRNA processing; IEA:UniProtKB-KW.::GO:0008033; P:tRNA processing; IEA:UniProtKB-KW. | 46 | Q9YEQ5 | 77 | RUXX_AERPE Putative snRNP Sm-like protein OS=... | 83 | 0.14 | 31.6 | 30 | 46 | GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW. | | | | | | | | | | | | | | | | | | | | | 47 | Q12U30 | 72 | RUXX_METBU Putative snRNP Sm-like protein OS=... | 75 | 0.2 | 31.2 | 28 | 49 | GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW. | | | | | | | | | | | | | | | | | | | | | 48 | Q969L4 | 123 | LSM10_HUMAN U7 snRNA-associated Sm-like prote... | 67 | 0.24 | 32 | 27 | 48 | GO:0015030; C:Cajal body; IDA:UniProtKB.::GO:0005683; C:U7 snRNP; IDA:UniProtKB. | | | | | | | | | | GO:0071208; F:histone pre-mRNA DCP binding; ISS:UniProtKB.::GO:0005515; F:protein binding; IPI:UniProtKB. | | | | | | | | | | GO:0008334; P:histone mRNA metabolic process; TAS:Reactome.::GO:0006397; P:mRNA processing; TAS:Reactome.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.::GO:0000084; P:S phase of mitotic cell cycle; IMP:UniProtKB.::GO:0006369; P:termination of RNA polymerase II transcription; TAS:Reactome. | 49 | P57743 | 89 | LSM3_YEAST U6 snRNA-associated Sm-like protei... | 66 | 0.36 | 30.8 | 33 | 48 | GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0005730; C:nucleolus; IDA:SGD.::GO:0005732; C:small nucleolar ribonucleoprotein complex; IPI:SGD.::GO:0046540; C:U4/U6 x U5 tri-snRNP complex; IDA:SGD.::GO:0005688; C:U6 snRNP; IDA:SGD. | | | | | | | | | | GO:0005515; F:protein binding; IPI:IntAct.::GO:0003723; F:RNA binding; TAS:SGD. | | | | | | | | | | GO:0000398; P:nuclear mRNA splicing, via spliceosome; IPI:SGD.::GO:0000956; P:nuclear-transcribed mRNA catabolic process; TAS:SGD.::GO:0006364; P:rRNA processing; IEA:UniProtKB-KW.::GO:0008033; P:tRNA processing; IEA:UniProtKB-KW. | 50 | P38203 | 95 | LSM2_YEAST U6 snRNA-associated Sm-like protei... | 67 | 0.43 | 30.8 | 28 | 54 | GO:0000932; C:cytoplasmic mRNA processing body; IDA:SGD.::GO:0005730; C:nucleolus; IDA:SGD.::GO:0005732; C:small nucleolar ribonucleoprotein complex; IPI:SGD.::GO:0046540; C:U4/U6 x U5 tri-snRNP complex; IDA:SGD.::GO:0005688; C:U6 snRNP; IDA:SGD. | | | | | | | | | | GO:0005515; F:protein binding; IPI:IntAct.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW. | | | | | | | | | | GO:0000398; P:nuclear mRNA splicing, via spliceosome; IPI:SGD.::GO:0000956; P:nuclear-transcribed mRNA catabolic process; TAS:SGD.::GO:0006364; P:rRNA processing; IEA:UniProtKB-KW.::GO:0008033; P:tRNA processing; IEA:UniProtKB-KW. | 51 | P43321 | 101 | SMD3_YEAST Small nuclear ribonucleoprotein Sm... | 77 | 0.5 | 30.8 | 27 | 49 | GO:0000243; C:commitment complex; IPI:SGD.::GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0005685; C:U1 snRNP; IDA:SGD.::GO:0071004; C:U2-type prespliceosome; IDA:SGD.::GO:0046540; C:U4/U6 x U5 tri-snRNP complex; IDA:SGD.::GO:0005682; C:U5 snRNP; IDA:SGD. | | | | | | | | | | GO:0003729; F:mRNA binding; IPI:SGD. | | | | | | | | | | GO:0000398; P:nuclear mRNA splicing, via spliceosome; IPI:SGD. | 52 | Q8QZX5 | 122 | LSM10_MOUSE U7 snRNA-associated Sm-like prote... | 67 | 0.54 | 31.2 | 27 | 49 | GO:0015030; C:Cajal body; ISS:UniProtKB.::GO:0005683; C:U7 snRNP; ISS:UniProtKB. | | | | | | | | | | GO:0071208; F:histone pre-mRNA DCP binding; IDA:UniProtKB. | | | | | | | | | | GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.::GO:0000084; P:S phase of mitotic cell cycle; ISS:UniProtKB. | 53 | Q10163 | 147 | RSMB_SCHPO Small nuclear ribonucleoprotein-as... | 51 | 0.77 | 30.8 | 35 | 57 | GO:0005829; C:cytosol; IDA:PomBase.::GO:0005681; C:spliceosomal complex; IC:PomBase.::GO:0005685; C:U1 snRNP; IDA:PomBase.::GO:0046540; C:U4/U6 x U5 tri-snRNP complex; ISS:PomBase. | | | | | | | | | | GO:0003723; F:RNA binding; IEA:UniProtKB-KW. | | | | | | | | | | GO:0000395; P:nuclear mRNA 5'-splice site recognition; IC:PomBase. | 54 | O94408 | 96 | LSM2_SCHPO U6 snRNA-associated Sm-like protei... | 67 | 1 | 30 | 30 | 51 | GO:0005829; C:cytosol; IDA:PomBase.::GO:0005730; C:nucleolus; ISS:PomBase.::GO:0005732; C:small nucleolar ribonucleoprotein complex; ISS:PomBase.::GO:0005681; C:spliceosomal complex; NAS:PomBase.::GO:0046540; C:U4/U6 x U5 tri-snRNP complex; ISS:PomBase.::GO:0005688; C:U6 snRNP; ISS:PomBase. | | | | | | | | | | GO:0003723; F:RNA binding; ISS:PomBase. | | | | | | | | | | GO:0006402; P:mRNA catabolic process; ISS:PomBase.::GO:0045292; P:nuclear mRNA cis splicing, via spliceosome; ISS:PomBase.::GO:0006364; P:rRNA processing; ISS:PomBase. | 55 | B0TY95 | 201 | RECR_FRAP2 Recombination protein RecR OS=Fran... | 39 | 1.1 | 30.8 | 33 | 59 | | | | | | | | | | | GO:0003677; F:DNA binding; IEA:InterPro.::GO:0046872; F:metal ion binding; IEA:UniProtKB-KW. | | | | | | | | | | GO:0006310; P:DNA recombination; IEA:UniProtKB-KW.::GO:0006281; P:DNA repair; IEA:UniProtKB-KW. | 56 | O26745 | 81 | RUXX_METTH Putative snRNP Sm-like protein OS=... | 70 | 1.8 | 28.9 | 30 | 49 | GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW. | | | | | | | | | | | | | | | | | | | | | 57 | Q1QCM0 | 197 | RECR_PSYCK Recombination protein RecR OS=Psyc... | 39 | 2.4 | 29.6 | 36 | 56 | | | | | | | | | | | GO:0003677; F:DNA binding; IEA:InterPro.::GO:0046872; F:metal ion binding; IEA:UniProtKB-KW. | | | | | | | | | | GO:0006310; P:DNA recombination; IEA:UniProtKB-KW.::GO:0006281; P:DNA repair; IEA:UniProtKB-KW. | 58 | Q4FNA8 | 203 | RECR_PELUB Recombination protein RecR OS=Pela... | 44 | 3 | 29.3 | 36 | 55 | | | | | | | | | | | GO:0003677; F:DNA binding; IEA:InterPro.::GO:0046872; F:metal ion binding; IEA:UniProtKB-KW. | | | | | | | | | | GO:0006310; P:DNA recombination; IEA:UniProtKB-KW.::GO:0006281; P:DNA repair; IEA:UniProtKB-KW. | 59 | A0ZZN6 | 200 | RECR_BIFAA Recombination protein RecR OS=1181... | 40 | 3.5 | 29.3 | 45 | 60 | | | | | | | | | | | GO:0003677; F:DNA binding; IEA:InterPro.::GO:0046872; F:metal ion binding; IEA:UniProtKB-KW. | | | | | | | | | | GO:0006310; P:DNA recombination; IEA:UniProtKB-KW.::GO:0006281; P:DNA repair; IEA:UniProtKB-KW. | 60 | Q54RX0 | 85 | RUXG_DICDI Probable small nuclear ribonucleop... | 48 | 4.4 | 28.1 | 35 | 48 | GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.::GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW. | | | | | | | | | | GO:0003723; F:RNA binding; IEA:UniProtKB-KW. | | | | | | | | | | GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW. | 61 | Q19952 | 123 | LSM4_CAEEL Probable U6 snRNA-associated Sm-li... | 56 | 5.9 | 28.5 | 29 | 55 | GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.::GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW. | | | | | | | | | | GO:0003723; F:RNA binding; IEA:UniProtKB-KW. | | | | | | | | | | GO:0010171; P:body morphogenesis; IMP:WormBase.::GO:0008340; P:determination of adult lifespan; IMP:WormBase.::GO:0009792; P:embryo development ending in birth or egg hatching; IMP:WormBase.::GO:0007281; P:germ cell development; IMP:WormBase.::GO:0040011; P:locomotion; IMP:WormBase.::GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0040027; P:negative regulation of vulval development; IMP:WormBase.::GO:0040010; P:positive regulation of growth rate; IMP:WormBase.::GO:0006898; P:receptor-mediated endocytosis; IMP:WormBase.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW. |