Fungal Genome Collection
University of Nebraska Lincoln
School of Biological Sciences and Center for Plant Science Innovation
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UniProt_SwissProt BLAST: Single locus
Species:
Saccharomyces cerevisiae S288C
Locus:
YDR311W
Length:
642
Number of sequences:
5887
Description:
YDR311W TFB1 SGDID:S000002719, Chr IV from 1085065-1086993, Genome Release 64-1-1, Verified ORF, "Subunit of TFIIH and nucleotide excision repair factor 3 complexes, required for nucleotide excision repair, target for transcriptional activators"
rec.SubjectHit LengthDescriptionAlign.LenE valueBit score% ident.  % pos.GO associations
1P32776    642   TFB1_YEAST RNA polymerase II transcription fa...6420     1324     100     100GO:0000439; C:core TFIIH complex; IDA:SGD.::GO:0005675; C:holo TFIIH complex; IDA:SGD.::GO:0000112; C:nucleotide-excision repair factor 3 complex; IDA:SGD.
GO:0032266; F:phosphatidylinositol-3-phosphate binding; IDA:SGD.::GO:0010314; F:phosphatidylinositol-5-phosphate binding; IDA:SGD.::GO:0005515; F:protein binding; IPI:IntAct.
GO:0006289; P:nucleotide-excision repair; IMP:SGD.::GO:0070816; P:phosphorylation of RNA polymerase II C-terminal domain; IDA:SGD.::GO:0006360; P:transcription from RNA polymerase I promoter; IMP:SGD.::GO:0006366; P:transcription from RNA polymerase II promoter; IDA:SGD.
2O13745    533   TFB1_SCHPO RNA polymerase II transcription fa...4342e-43     167     31     50GO:0005829; C:cytosol; IDA:PomBase.::GO:0005675; C:holo TFIIH complex; ISS:PomBase.::GO:0000112; C:nucleotide-excision repair factor 3 complex; ISS:PomBase.
GO:0000991; F:core RNA polymerase II binding transcription factor activity; ISS:PomBase.
GO:0000717; P:nucleotide-excision repair, DNA duplex unwinding; ISS:PomBase.::GO:0006355; P:regulation of transcription, DNA-dependent; IEA:UniProtKB-KW.::GO:0006367; P:transcription initiation from RNA polymerase II promoter; ISS:PomBase.
3Q9P5N7    663   TFB1_NEUCR Putative RNA polymerase II transcr...3963e-37     150     32     50GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0006355; P:regulation of transcription, DNA-dependent; IEA:UniProtKB-KW.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW.
4P32780    548   TF2H1_HUMAN General transcription factor IIH ...1390.0000000000005     75.5     34     53GO:0005675; C:holo TFIIH complex; IDA:UniProtKB.
GO:0005515; F:protein binding; IPI:UniProtKB.
GO:0006370; P:mRNA capping; TAS:Reactome.::GO:0000718; P:nucleotide-excision repair, DNA damage removal; TAS:Reactome.::GO:0045944; P:positive regulation of transcription from RNA polymerase II promoter; IDA:UniProtKB.::GO:0050434; P:positive regulation of viral transcription; TAS:Reactome.::GO:0006468; P:protein phosphorylation; IDA:GOC.::GO:0000079; P:regulation of cyclin-dependent protein kinase activity; TAS:ProtInc.::GO:0006363; P:termination of RNA polymerase I transcription; TAS:Reactome.::GO:0006362; P:transcription elongation from RNA polymerase I promoter; TAS:Reactome.::GO:0006368; P:transcription elongation from RNA polymerase II promoter; TAS:Reactome.::GO:0006361; P:transcription initiation from RNA polymerase I promoter; TAS:Reactome.::GO:0006367; P:transcription initiation from RNA polymerase II promoter; TAS:Reactome.::GO:0006283; P:transcription-coupled nucleotide-excision repair; TAS:Reactome.::GO:0016032; P:viral reproduction; TAS:Reactome.
5Q960E8    585   TF2H1_DROME General transcription factor IIH ...1280.000000000002     73.6     33     52GO:0000439; C:core TFIIH complex; ISS:FlyBase.::GO:0005675; C:holo TFIIH complex; IDA:FlyBase.
GO:0006281; P:DNA repair; IEA:UniProtKB-KW.::GO:0006355; P:regulation of transcription, DNA-dependent; IEA:UniProtKB-KW.::GO:0009411; P:response to UV; IMP:FlyBase.::GO:0006367; P:transcription initiation from RNA polymerase II promoter; ISS:FlyBase.
6Q9DBA9    547   TF2H1_MOUSE General transcription factor IIH ...1180.000000000006     72     35     54GO:0005675; C:holo TFIIH complex; ISS:UniProtKB.
GO:0006281; P:DNA repair; IEA:UniProtKB-KW.::GO:0006468; P:protein phosphorylation; ISS:GOC.::GO:0006355; P:regulation of transcription, DNA-dependent; IEA:UniProtKB-KW.::GO:0006366; P:transcription from RNA polymerase II promoter; ISS:UniProtKB.
7Q3ECP0    591   TFB1A_ARATH Probable RNA polymerase II transc...5120.00000000005     69.3     23     41GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0006281; P:DNA repair; IEA:UniProtKB-KW.::GO:0006355; P:regulation of transcription, DNA-dependent; IEA:UniProtKB-KW.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW.
8Q9M322    579   TFB1C_ARATH Probable RNA polymerase II transc...1200.0000000002     67.4     34     56GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0006281; P:DNA repair; IEA:UniProtKB-KW.::GO:0006355; P:regulation of transcription, DNA-dependent; IEA:UniProtKB-KW.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW.
9Q55FP1    697   TF2H1_DICDI General transcription factor IIH ...2410.000000004     63.5     26     46GO:0005675; C:holo TFIIH complex; ISS:dictyBase.::GO:0000112; C:nucleotide-excision repair factor 3 complex; ISS:dictyBase.
GO:0006289; P:nucleotide-excision repair; ISS:dictyBase.::GO:0006355; P:regulation of transcription, DNA-dependent; IEA:UniProtKB-KW.::GO:0006367; P:transcription initiation from RNA polymerase II promoter; ISS:dictyBase.
10Q8A806    331   MURB_BACTN UDP-N-acetylenolpyruvoylglucosamin...1380.42     37     28     44GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0050660; F:flavin adenine dinucleotide binding; IEA:InterPro.::GO:0008762; F:UDP-N-acetylmuramate dehydrogenase activity; IEA:EC.
GO:0007049; P:cell cycle; IEA:UniProtKB-KW.::GO:0051301; P:cell division; IEA:UniProtKB-KW.::GO:0007047; P:cellular cell wall organization; IEA:UniProtKB-KW.::GO:0009252; P:peptidoglycan biosynthetic process; IEA:UniProtKB-KW.::GO:0008360; P:regulation of cell shape; IEA:UniProtKB-KW.
11Q8L838    738   COG4_ARATH Conserved oligomeric Golgi complex...591.7     35.4     36     54GO:0000139; C:Golgi membrane; IEA:UniProtKB-SubCell.
GO:0015031; P:protein transport; IEA:UniProtKB-KW.
12Q119H9    451   MIAB_TRIEI (Dimethylallyl)adenosine tRNA meth...571.7     35.4     33     51GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0051539; F:4 iron, 4 sulfur cluster binding; IEA:UniProtKB-KW.::GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.::GO:0016740; F:transferase activity; IEA:UniProtKB-KW.
GO:0006400; P:tRNA modification; IEA:InterPro.
13O13905    347   YF3E_SCHPO BSD domain-containing protein C22A...504.9     33.5     32     52GO:0005829; C:cytosol; IDA:PomBase.
14Q330E4    347   NU2M_MOLAE NADH-ubiquinone oxidoreductase cha...615     33.5     36     46GO:0016021; C:integral to membrane; IEA:UniProtKB-KW.::GO:0005743; C:mitochondrial inner membrane; IEA:UniProtKB-SubCell.::GO:0070469; C:respiratory chain; IEA:UniProtKB-KW.
GO:0008137; F:NADH dehydrogenase (ubiquinone) activity; IEA:EC.
GO:0006120; P:mitochondrial electron transport, NADH to ubiquinone; IEA:InterPro.::GO:0006810; P:transport; IEA:UniProtKB-KW.
15B7K993    454   MIAB_CYAP7 (Dimethylallyl)adenosine tRNA meth...925.1     33.9     24     46GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0051539; F:4 iron, 4 sulfur cluster binding; IEA:UniProtKB-KW.::GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.::GO:0016740; F:transferase activity; IEA:UniProtKB-KW.
GO:0006400; P:tRNA modification; IEA:InterPro.
16B1WU96    448   MIAB_CYAA5 (Dimethylallyl)adenosine tRNA meth...576.6     33.5     32     51GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0051539; F:4 iron, 4 sulfur cluster binding; IEA:UniProtKB-KW.::GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.::GO:0016740; F:transferase activity; IEA:UniProtKB-KW.
GO:0006400; P:tRNA modification; IEA:InterPro.
records
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