Fungal Genome Collection
University of Nebraska Lincoln
School of Biological Sciences and Center for Plant Science Innovation
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UniProt_SwissProt BLAST: Single locus
Species:
Saccharomyces cerevisiae S288C
Locus:
YDR289C
Length:
409
Number of sequences:
5887
Description:
YDR289C RTT103 SGDID:S000002697, Chr IV from 1039509-1038280, Genome Release 64-1-1, reverse complement, Verified ORF, "Protein that interacts with exonuclease Rat1p and Rai1p and plays a role in transcription termination by RNA polymerase II, has an RPR domain (carboxy-terminal domain interacting domain); also involved in regulation of Ty1 transposition"
rec.SubjectHit LengthDescriptionAlign.LenE valueBit score% ident.  % pos.GO associations
1Q05543    409   RT103_YEAST Regulator of Ty1 transposition pr...4090     833     100     100GO:0000790; C:nuclear chromatin; IDA:SGD.::GO:0035861; C:site of double-strand break; IDA:SGD.
GO:0003677; F:DNA binding; IEA:UniProtKB-KW.::GO:0000993; F:RNA polymerase II core binding; IDA:SGD.
GO:0031124; P:mRNA 3'-end processing; IMP:SGD.::GO:0010526; P:negative regulation of transposition, RNA-mediated; IMP:SGD.::GO:0006355; P:regulation of transcription, DNA-dependent; IEA:UniProtKB-KW.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW.
2O74814    387   YJ03_SCHPO UPF0400 protein C337.03 OS=Schizos...2510.0000000000003     74.3     26     49GO:0005829; C:cytosol; IDA:PomBase.::GO:0005634; C:nucleus; IDA:PomBase.
GO:0030846; P:termination of RNA polymerase II transcription, poly(A)-coupled; ISS:PomBase.
3Q5R8Y3    312   RPR1A_PONAB Regulation of nuclear pre-mRNA do...1350.00000000006     66.6     30     53GO:0016591; C:DNA-directed RNA polymerase II, holoenzyme; ISS:UniProtKB.
GO:0070940; P:dephosphorylation of RNA polymerase II C-terminal domain; ISS:UniProtKB.
4Q96P16    312   RPR1A_HUMAN Regulation of nuclear pre-mRNA do...1350.00000000006     66.6     30     53GO:0016591; C:DNA-directed RNA polymerase II, holoenzyme; IDA:UniProtKB.
GO:0070940; P:dephosphorylation of RNA polymerase II C-terminal domain; IMP:UniProtKB.
5Q0P5J9    312   RPR1A_BOVIN Regulation of nuclear pre-mRNA do...1350.00000000006     66.6     30     53GO:0016591; C:DNA-directed RNA polymerase II, holoenzyme; ISS:UniProtKB.
GO:0070940; P:dephosphorylation of RNA polymerase II C-terminal domain; ISS:UniProtKB.
6Q9NQG5    326   RPR1B_HUMAN Regulation of nuclear pre-mRNA do...1350.00000000007     66.6     30     52GO:0016591; C:DNA-directed RNA polymerase II, holoenzyme; IDA:UniProtKB.
GO:0000993; F:RNA polymerase II core binding; IDA:UniProtKB.
GO:0070940; P:dephosphorylation of RNA polymerase II C-terminal domain; IMP:UniProtKB.::GO:0008284; P:positive regulation of cell proliferation; IDA:UniProtKB.::GO:0045944; P:positive regulation of transcription from RNA polymerase II promoter; IDA:UniProtKB.::GO:0010564; P:regulation of cell cycle process; IDA:UniProtKB.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW.
7Q9CSU0    326   RPR1B_MOUSE Regulation of nuclear pre-mRNA do...1350.00000000008     66.6     30     52GO:0016591; C:DNA-directed RNA polymerase II, holoenzyme; ISS:UniProtKB.
GO:0000993; F:RNA polymerase II core binding; ISS:UniProtKB.
GO:0070940; P:dephosphorylation of RNA polymerase II C-terminal domain; ISS:UniProtKB.::GO:0008284; P:positive regulation of cell proliferation; ISS:UniProtKB.::GO:0045944; P:positive regulation of transcription from RNA polymerase II promoter; ISS:UniProtKB.::GO:0010564; P:regulation of cell cycle process; ISS:UniProtKB.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW.
8Q8VDS4    312   RPR1A_MOUSE Regulation of nuclear pre-mRNA do...1290.0000000002     65.1     30     53GO:0016591; C:DNA-directed RNA polymerase II, holoenzyme; ISS:UniProtKB.
GO:0070940; P:dephosphorylation of RNA polymerase II C-terminal domain; ISS:UniProtKB.
9Q5ZM30    268   RPR1A_CHICK Regulation of nuclear pre-mRNA do...1290.000000002     61.6     29     52GO:0016591; C:DNA-directed RNA polymerase II, holoenzyme; ISS:UniProtKB.
GO:0070940; P:dephosphorylation of RNA polymerase II C-terminal domain; ISS:UniProtKB.
10Q5VT52    1461   RPRD2_HUMAN Regulation of nuclear pre-mRNA do...1230.000003     53.1     24     47GO:0016591; C:DNA-directed RNA polymerase II, holoenzyme; IDA:UniProtKB.
11Q6NXI6    1469   RPRD2_MOUSE Regulation of nuclear pre-mRNA do...1210.00003     50.4     23     46GO:0016591; C:DNA-directed RNA polymerase II, holoenzyme; ISS:UniProtKB.
12P0C6U5    4421   R1A_CVHN5 Replicase polyprotein 1a OS=Human c...1090.01     42     32     47GO:0033644; C:host cell membrane; IEA:UniProtKB-SubCell.::GO:0044220; C:host cell perinuclear region of cytoplasm; IEA:UniProtKB-SubCell.::GO:0016021; C:integral to membrane; IEA:UniProtKB-KW.::GO:0048471; C:perinuclear region of cytoplasm; IEA:InterPro.::GO:0019034; C:viral replication complex; IEA:InterPro.
GO:0004197; F:cysteine-type endopeptidase activity; IEA:InterPro.::GO:0008242; F:omega peptidase activity; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.::GO:0003968; F:RNA-directed RNA polymerase activity; IEA:InterPro.::GO:0008270; F:zinc ion binding; IEA:InterPro.
GO:0030683; P:evasion by virus of host immune response; IEA:UniProtKB-KW.::GO:0006508; P:proteolysis; IEA:UniProtKB-KW.::GO:0019079; P:viral genome replication; IEA:InterPro.::GO:0019082; P:viral protein processing; IEA:InterPro.
13P0C6X4    7132   R1AB_CVHN5 Replicase polyprotein 1ab OS=Human...1090.01     42     32     47GO:0044172; C:host cell endoplasmic reticulum-Golgi intermediate compartment; IEA:UniProtKB-SubCell.::GO:0033644; C:host cell membrane; IEA:UniProtKB-SubCell.::GO:0044220; C:host cell perinuclear region of cytoplasm; IEA:UniProtKB-SubCell.::GO:0016021; C:integral to membrane; IEA:UniProtKB-KW.::GO:0048471; C:perinuclear region of cytoplasm; IEA:InterPro.::GO:0019034; C:viral replication complex; IEA:InterPro.
GO:0005524; F:ATP binding; IEA:UniProtKB-KW.::GO:0004197; F:cysteine-type endopeptidase activity; IEA:InterPro.::GO:0004519; F:endonuclease activity; IEA:UniProtKB-KW.::GO:0016896; F:exoribonuclease activity, producing 5'-phosphomonoesters; IEA:InterPro.::GO:0004386; F:helicase activity; IEA:UniProtKB-KW.::GO:0008168; F:methyltransferase activity; IEA:InterPro.::GO:0008242; F:omega peptidase activity; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.::GO:0003968; F:RNA-directed RNA polymerase activity; IEA:UniProtKB-KW.::GO:0008270; F:zinc ion binding; IEA:InterPro.
GO:0030683; P:evasion by virus of host immune response; IEA:UniProtKB-KW.::GO:0006508; P:proteolysis; IEA:UniProtKB-KW.::GO:0006351; P:transcription, DNA-dependent; IEA:InterPro.::GO:0019079; P:viral genome replication; IEA:InterPro.::GO:0019082; P:viral protein processing; IEA:InterPro.
14P0C6X2    7182   R1AB_CVHN1 Replicase polyprotein 1ab OS=Human...1130.28     37.4     29     48GO:0044172; C:host cell endoplasmic reticulum-Golgi intermediate compartment; IEA:UniProtKB-SubCell.::GO:0033644; C:host cell membrane; IEA:UniProtKB-SubCell.::GO:0044220; C:host cell perinuclear region of cytoplasm; IEA:UniProtKB-SubCell.::GO:0016021; C:integral to membrane; IEA:UniProtKB-KW.::GO:0048471; C:perinuclear region of cytoplasm; IEA:InterPro.::GO:0019034; C:viral replication complex; IEA:InterPro.
GO:0005524; F:ATP binding; IEA:UniProtKB-KW.::GO:0004197; F:cysteine-type endopeptidase activity; IEA:InterPro.::GO:0004519; F:endonuclease activity; IEA:UniProtKB-KW.::GO:0016896; F:exoribonuclease activity, producing 5'-phosphomonoesters; IEA:InterPro.::GO:0004386; F:helicase activity; IEA:UniProtKB-KW.::GO:0008168; F:methyltransferase activity; IEA:InterPro.::GO:0008242; F:omega peptidase activity; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.::GO:0003968; F:RNA-directed RNA polymerase activity; IEA:UniProtKB-KW.::GO:0008270; F:zinc ion binding; IEA:InterPro.
GO:0030683; P:evasion by virus of host immune response; IEA:UniProtKB-KW.::GO:0006508; P:proteolysis; IEA:UniProtKB-KW.::GO:0006351; P:transcription, DNA-dependent; IEA:InterPro.::GO:0019079; P:viral genome replication; IEA:InterPro.::GO:0019082; P:viral protein processing; IEA:InterPro.
15P0C6U4    4441   R1A_CVHN2 Replicase polyprotein 1a OS=Human c...910.32     37.4     32     49GO:0033644; C:host cell membrane; IEA:UniProtKB-SubCell.::GO:0044220; C:host cell perinuclear region of cytoplasm; IEA:UniProtKB-SubCell.::GO:0016021; C:integral to membrane; IEA:UniProtKB-KW.::GO:0048471; C:perinuclear region of cytoplasm; IEA:InterPro.::GO:0019034; C:viral replication complex; IEA:InterPro.
GO:0004197; F:cysteine-type endopeptidase activity; IEA:InterPro.::GO:0008242; F:omega peptidase activity; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.::GO:0003968; F:RNA-directed RNA polymerase activity; IEA:InterPro.::GO:0008270; F:zinc ion binding; IEA:InterPro.
GO:0030683; P:evasion by virus of host immune response; IEA:UniProtKB-KW.::GO:0006508; P:proteolysis; IEA:UniProtKB-KW.::GO:0019079; P:viral genome replication; IEA:InterPro.::GO:0019082; P:viral protein processing; IEA:InterPro.
16P0C6U3    4471   R1A_CVHN1 Replicase polyprotein 1a OS=Human c...1130.28     37.4     29     48GO:0033644; C:host cell membrane; IEA:UniProtKB-SubCell.::GO:0044220; C:host cell perinuclear region of cytoplasm; IEA:UniProtKB-SubCell.::GO:0016021; C:integral to membrane; IEA:UniProtKB-KW.::GO:0048471; C:perinuclear region of cytoplasm; IEA:InterPro.::GO:0019034; C:viral replication complex; IEA:InterPro.
GO:0004197; F:cysteine-type endopeptidase activity; IEA:InterPro.::GO:0008242; F:omega peptidase activity; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.::GO:0003968; F:RNA-directed RNA polymerase activity; IEA:InterPro.::GO:0008270; F:zinc ion binding; IEA:InterPro.
GO:0030683; P:evasion by virus of host immune response; IEA:UniProtKB-KW.::GO:0006508; P:proteolysis; IEA:UniProtKB-KW.::GO:0019079; P:viral genome replication; IEA:InterPro.::GO:0019082; P:viral protein processing; IEA:InterPro.
17P0C6X3    7152   R1AB_CVHN2 Replicase polyprotein 1ab OS=Human...910.32     37.4     32     49GO:0044172; C:host cell endoplasmic reticulum-Golgi intermediate compartment; IEA:UniProtKB-SubCell.::GO:0033644; C:host cell membrane; IEA:UniProtKB-SubCell.::GO:0044220; C:host cell perinuclear region of cytoplasm; IEA:UniProtKB-SubCell.::GO:0016021; C:integral to membrane; IEA:UniProtKB-KW.::GO:0048471; C:perinuclear region of cytoplasm; IEA:InterPro.::GO:0019034; C:viral replication complex; IEA:InterPro.
GO:0005524; F:ATP binding; IEA:UniProtKB-KW.::GO:0004197; F:cysteine-type endopeptidase activity; IEA:InterPro.::GO:0004519; F:endonuclease activity; IEA:UniProtKB-KW.::GO:0016896; F:exoribonuclease activity, producing 5'-phosphomonoesters; IEA:InterPro.::GO:0004386; F:helicase activity; IEA:UniProtKB-KW.::GO:0008168; F:methyltransferase activity; IEA:InterPro.::GO:0008242; F:omega peptidase activity; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.::GO:0003968; F:RNA-directed RNA polymerase activity; IEA:UniProtKB-KW.::GO:0008270; F:zinc ion binding; IEA:InterPro.
GO:0030683; P:evasion by virus of host immune response; IEA:UniProtKB-KW.::GO:0006508; P:proteolysis; IEA:UniProtKB-KW.::GO:0006351; P:transcription, DNA-dependent; IEA:InterPro.::GO:0019079; P:viral genome replication; IEA:InterPro.::GO:0019082; P:viral protein processing; IEA:InterPro.
18A5DCV3    1579   RPB1_PICGU DNA-directed RNA polymerase II sub...2690.017     41.2     23     40GO:0005665; C:DNA-directed RNA polymerase II, core complex; IEA:InterPro.
GO:0003677; F:DNA binding; IEA:UniProtKB-KW.::GO:0003899; F:DNA-directed RNA polymerase activity; IEA:UniProtKB-KW.::GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
GO:0006366; P:transcription from RNA polymerase II promoter; IEA:InterPro.
19A8WLG6    311   CIDS1_CAEBR CID domain-containing protein 1 O...1200.03     39.7     23     48
20Q18DN4    9159   HMU_HALWD Halomucin OS=Haloquadratum walsbyi ...638.8     32.7     25     48GO:0005576; C:extracellular region; IEA:UniProtKB-SubCell.::GO:0016020; C:membrane; IEA:InterPro.
GO:0005509; F:calcium ion binding; IEA:InterPro.::GO:0030246; F:carbohydrate binding; IEA:InterPro.::GO:0004180; F:carboxypeptidase activity; IEA:InterPro.
GO:0007156; P:homophilic cell adhesion; IEA:InterPro.
21P34281    315   CIDS1_CAEEL CID domain-containing protein 1 O...1190.2     37.4     24     50
GO:0031124; P:mRNA 3'-end processing; IMP:WormBase.::GO:0040027; P:negative regulation of vulval development; IMP:WormBase.
22B7K2B6    429   SYH_CYAP8 Histidine--tRNA ligase OS=RF-1)). G...1350.22     37.4     27     44GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0005524; F:ATP binding; IEA:UniProtKB-KW.::GO:0004821; F:histidine-tRNA ligase activity; IEA:EC.
GO:0006427; P:histidyl-tRNA aminoacylation; IEA:InterPro.
23B5ES07    261   PANB_ACIF5 3-methyl-2-oxobutanoate hydroxymet...650.42     36.2     32     45GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0003864; F:3-methyl-2-oxobutanoate hydroxymethyltransferase activity; IEA:EC.::GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.::GO:0008168; F:methyltransferase activity; IEA:UniProtKB-KW.
GO:0015940; P:pantothenate biosynthetic process; IEA:UniProtKB-KW.
24B7JBM8    261   PANB_ACIF2 3-methyl-2-oxobutanoate hydroxymet...650.42     36.2     32     45GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0003864; F:3-methyl-2-oxobutanoate hydroxymethyltransferase activity; IEA:EC.::GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.::GO:0008168; F:methyltransferase activity; IEA:UniProtKB-KW.
GO:0015940; P:pantothenate biosynthetic process; IEA:UniProtKB-KW.
25Q20JQ7    1784   SC4AB_DANRE Sodium channel protein type 4 sub...631.3     35     27     56GO:0001518; C:voltage-gated sodium channel complex; IEA:InterPro.
GO:0005248; F:voltage-gated sodium channel activity; IEA:InterPro.
26Q88UX4    405   THII_LACPL Probable tRNA sulfurtransferase OS...902.6     33.9     26     52GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0005524; F:ATP binding; IEA:UniProtKB-KW.::GO:0016740; F:transferase activity; IEA:UniProtKB-KW.::GO:0000049; F:tRNA binding; IEA:UniProtKB-KW.
GO:0009228; P:thiamine biosynthetic process; IEA:UniProtKB-KW.
27Q9UPN6    1271   SCAF8_HUMAN Protein SCAF8 OS=Homo sapiens (Hu...902.8     33.9     26     52GO:0016363; C:nuclear matrix; ISS:UniProtKB.::GO:0005681; C:spliceosomal complex; IEA:UniProtKB-KW.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.::GO:0043175; F:RNA polymerase core enzyme binding; IPI:UniProtKB.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.
28Q4K5Q4    374   RLMG_PSEF5 Ribosomal RNA large subunit methyl...363.2     33.5     39     67GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0052916; F:23S rRNA (guanine(1835)-N(2))-methyltransferase activity; IEA:EC.::GO:0003676; F:nucleic acid binding; IEA:InterPro.
29A8EZQ5    813   SYV_RICCK Valine--tRNA ligase OS=Rickettsia c...703.7     33.5     30     51GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0005524; F:ATP binding; IEA:UniProtKB-KW.::GO:0004832; F:valine-tRNA ligase activity; IEA:EC.
GO:0006438; P:valyl-tRNA aminoacylation; IEA:InterPro.
30Q6DID3    1268   SCAF8_MOUSE Protein SCAF8 OS=Mus musculus (Mo...745.7     33.1     26     58GO:0016363; C:nuclear matrix; ISS:UniProtKB.::GO:0005681; C:spliceosomal complex; IEA:UniProtKB-KW.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.
31P18311    784   IF2_ENTFC Translation initiation factor IF-2 ...547     32.7     30     52GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0005525; F:GTP binding; IEA:UniProtKB-KW.::GO:0003924; F:GTPase activity; IEA:InterPro.::GO:0003743; F:translation initiation factor activity; IEA:UniProtKB-KW.
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