Fungal Genome Collection
University of Nebraska Lincoln
School of Biological Sciences and Center for Plant Science Innovation
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UniProt_SwissProt BLAST: Single locus
Species:
Saccharomyces cerevisiae S288C
Locus:
YDR288W
Length:
303
Number of sequences:
5887
Description:
YDR288W NSE3 SGDID:S000002696, Chr IV from 1037195-1038106, Genome Release 64-1-1, Verified ORF, "Essential subunit of the Mms21-Smc5-Smc6 complex; protein of unknown function; required for DNA repair and growth"
rec.SubjectHit LengthDescriptionAlign.LenE valueBit score% ident.  % pos.GO associations
1Q05541    303   NSE3_YEAST Non-structural maintenance of chro...3030     612     100     100GO:0005737; C:cytoplasm; IDA:SGD.::GO:0005634; C:nucleus; IDA:SGD.::GO:0030915; C:Smc5-Smc6 complex; IDA:SGD.
GO:0005515; F:protein binding; IPI:IntAct.
GO:0006310; P:DNA recombination; IEA:UniProtKB-KW.::GO:0006281; P:DNA repair; IMP:SGD.
2P43366    347   MAGB1_HUMAN Melanoma-associated antigen B1 OS...1230.006     41.6     27     46
3B6J878    673   DNLJ_COXB1 DNA ligase OS=Q154)). GN=ligA Orde...1110.043     39.3     33     53GO:0005622; C:intracellular; IEA:InterPro.
GO:0003677; F:DNA binding; IEA:InterPro.::GO:0003911; F:DNA ligase (NAD+) activity; IEA:EC.::GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
GO:0006281; P:DNA repair; IEA:UniProtKB-KW.::GO:0006260; P:DNA replication; IEA:UniProtKB-KW.
4B6J1C6    677   DNLJ_COXB2 DNA ligase OS=Q212)). GN=ligA Orde...1110.043     38.9     33     53GO:0005622; C:intracellular; IEA:InterPro.
GO:0003677; F:DNA binding; IEA:InterPro.::GO:0003911; F:DNA ligase (NAD+) activity; IEA:EC.::GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
GO:0006281; P:DNA repair; IEA:UniProtKB-KW.::GO:0006260; P:DNA replication; IEA:UniProtKB-KW.
5Q83DZ6    673   DNLJ_COXBU DNA ligase OS=Coxiella burnetii (s...1110.044     38.9     33     53GO:0005622; C:intracellular; IEA:InterPro.
GO:0003677; F:DNA binding; IEA:InterPro.::GO:0003911; F:DNA ligase (NAD+) activity; IEA:EC.::GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
GO:0006281; P:DNA repair; IEA:UniProtKB-KW.::GO:0006260; P:DNA replication; IEA:UniProtKB-KW.
6A9NC33    670   DNLJ_COXBR DNA ligase OS=Coxiella burnetii (s...1110.045     38.9     33     53GO:0005622; C:intracellular; IEA:InterPro.
GO:0003677; F:DNA binding; IEA:InterPro.::GO:0003911; F:DNA ligase (NAD+) activity; IEA:EC.::GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
GO:0006281; P:DNA repair; IEA:UniProtKB-KW.::GO:0006260; P:DNA replication; IEA:UniProtKB-KW.
7A9KCS0    670   DNLJ_COXBN DNA ligase OS=Coxiella burnetii (s...1110.045     38.9     33     53GO:0005622; C:intracellular; IEA:InterPro.
GO:0003677; F:DNA binding; IEA:InterPro.::GO:0003911; F:DNA ligase (NAD+) activity; IEA:EC.::GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
GO:0006281; P:DNA repair; IEA:UniProtKB-KW.::GO:0006260; P:DNA replication; IEA:UniProtKB-KW.
8Q9Y7U4    328   NSE3_SCHPO Non-structural maintenance of chro...2530.059     38.1     22     38GO:0005634; C:nucleus; IDA:PomBase.::GO:0030915; C:Smc5-Smc6 complex; IPI:PomBase.
GO:0005515; F:protein binding; IPI:IntAct.
GO:0000724; P:double-strand break repair via homologous recombination; IGI:PomBase.::GO:0007126; P:meiosis; IEA:UniProtKB-KW.::GO:0000706; P:meiotic DNA double-strand break processing; IDA:PomBase.::GO:0000070; P:mitotic sister chromatid segregation; IMP:PomBase.::GO:0048478; P:replication fork protection; IGI:PomBase.
9Q03W49    1230   ADDA_LEUMM ATP-dependent helicase/nuclease su...1070.78     35     22     51
GO:0005524; F:ATP binding; IEA:UniProtKB-KW.::GO:0004003; F:ATP-dependent DNA helicase activity; IEA:InterPro.::GO:0003677; F:DNA binding; IEA:UniProtKB-KW.::GO:0004527; F:exonuclease activity; IEA:UniProtKB-KW.
GO:0006302; P:double-strand break repair; IEA:InterPro.
10Q8N7X4    407   MAGB6_HUMAN Melanoma-associated antigen B6 OS...1161.1     34.3     30     46
11Q96LZ2    347   MAGBA_HUMAN Melanoma-associated antigen B10 O...971.5     33.9     26     47
12A7I9K5    480   COBQ_METB6 Probable cobyric acid synthase OS=...771.8     33.9     30     49
GO:0003824; F:catalytic activity; IEA:InterPro.
GO:0009236; P:cobalamin biosynthetic process; IEA:UniProtKB-KW.::GO:0006541; P:glutamine metabolic process; IEA:UniProtKB-KW.
13P46349    469   GABP_BACSU GABA permease OS=Bacillus subtilis...762.4     33.5     26     55GO:0016021; C:integral to membrane; IEA:UniProtKB-KW.::GO:0005886; C:plasma membrane; IEA:UniProtKB-SubCell.
GO:0015185; F:L-gamma-aminobutyric acid transmembrane transporter activity; IEA:InterPro.
14O46491    501   CP7A1_PIG Cholesterol 7-alpha-monooxygenase O...512.8     33.1     35     53GO:0005789; C:endoplasmic reticulum membrane; IEA:UniProtKB-SubCell.::GO:0005792; C:microsome; ISS:UniProtKB.
GO:0008123; F:cholesterol 7-alpha-monooxygenase activity; ISS:UniProtKB.::GO:0009055; F:electron carrier activity; IEA:InterPro.::GO:0020037; F:heme binding; IEA:InterPro.
GO:0006699; P:bile acid biosynthetic process; ISS:UniProtKB.::GO:0071397; P:cellular response to cholesterol; ISS:UniProtKB.::GO:0071333; P:cellular response to glucose stimulus; ISS:UniProtKB.::GO:0006707; P:cholesterol catabolic process; ISS:UniProtKB.::GO:0042632; P:cholesterol homeostasis; ISS:UniProtKB.::GO:0070857; P:regulation of bile acid biosynthetic process; ISS:UniProtKB.
15Q8CF93    556   GLT13_MOUSE Polypeptide N-acetylgalactosaminy...953     33.1     31     47GO:0000139; C:Golgi membrane; IEA:UniProtKB-SubCell.::GO:0016021; C:integral to membrane; IEA:UniProtKB-KW.
GO:0004653; F:polypeptide N-acetylgalactosaminyltransferase activity; IDA:MGI.
GO:0006493; P:protein O-linked glycosylation; IDA:MGI.
16Q6UE39    556   GLT13_RAT Polypeptide N-acetylgalactosaminylt...953.2     33.1     31     47GO:0000139; C:Golgi membrane; IEA:UniProtKB-SubCell.::GO:0016021; C:integral to membrane; IEA:UniProtKB-KW.
GO:0004653; F:polypeptide N-acetylgalactosaminyltransferase activity; IEA:EC.
17Q8IUC8    556   GLT13_HUMAN Polypeptide N-acetylgalactosaminy...954.1     32.7     31     47GO:0000139; C:Golgi membrane; TAS:Reactome.::GO:0016021; C:integral to membrane; IEA:UniProtKB-KW.
GO:0004653; F:polypeptide N-acetylgalactosaminyltransferase activity; IEA:EC.
GO:0016266; P:O-glycan processing; TAS:Reactome.::GO:0043687; P:post-translational protein modification; TAS:Reactome.
18Q14005    1332   IL16_HUMAN Pro-interleukin-16 OS=Homo sapiens...566.5     32.3     38     55GO:0005737; C:cytoplasm; IDA:HPA.::GO:0005615; C:extracellular space; TAS:ProtInc.::GO:0005634; C:nucleus; IDA:HPA.::GO:0005886; C:plasma membrane; IDA:HPA.
GO:0005125; F:cytokine activity; IEA:UniProtKB-KW.
GO:0006955; P:immune response; TAS:ProtInc.::GO:0044419; P:interspecies interaction between organisms; IEA:UniProtKB-KW.::GO:0006355; P:regulation of transcription, DNA-dependent; IEA:UniProtKB-KW.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW.
19Q0AXI3    439   RIMO_SYNWW Ribosomal protein S12 methylthiotr...348.8     31.6     47     76GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0051539; F:4 iron, 4 sulfur cluster binding; IEA:UniProtKB-KW.::GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.::GO:0016740; F:transferase activity; IEA:UniProtKB-KW.
GO:0018339; P:peptidyl-L-beta-methylthioaspartic acid biosynthetic process from peptidyl-aspartic acid; IEA:InterPro.::GO:0009451; P:RNA modification; IEA:InterPro.
records
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