Fungal Genome Collection
University of Nebraska Lincoln
School of Biological Sciences and Center for Plant Science Innovation
Home About FGC Use Cases Species List

UniProt_SwissProt BLAST: Single locus
Species:
Saccharomyces cerevisiae S288C
Locus:
YDR280W
Length:
305
Number of sequences:
5887
Description:
YDR280W RRP45 SGDID:S000002688, Chr IV from 1020747-1021664, Genome Release 64-1-1, Verified ORF, "Exosome non-catalytic core component; involved in 3'-5' RNA processing and degradation in both the nucleus and the cytoplasm; has similarity to E. coli RNase PH and to human hRrp45p (PM/SCL-75, EXOSC9)"
rec.SubjectHit LengthDescriptionAlign.LenE valueBit score% ident.  % pos.GO associations
91Q13V47    246   RNPH_BURXL Ribonuclease PH OS=Burkholderia xe...1382.3     33.1     31     44
GO:0000049; F:tRNA binding; IEA:InterPro.::GO:0009022; F:tRNA nucleotidyltransferase activity; IEA:EC.::GO:0004549; F:tRNA-specific ribonuclease activity; IEA:InterPro.
GO:0008033; P:tRNA processing; IEA:UniProtKB-KW.
92A6VEE1    239   RNPH_PSEA7 Ribonuclease PH OS=Pseudomonas aer...1572.4     33.1     28     43
GO:0000049; F:tRNA binding; IEA:InterPro.::GO:0009022; F:tRNA nucleotidyltransferase activity; IEA:EC.::GO:0004549; F:tRNA-specific ribonuclease activity; IEA:InterPro.
GO:0008033; P:tRNA processing; IEA:UniProtKB-KW.
93P50597    239   RNPH_PSEAE Ribonuclease PH OS=12228). GN=rph ...1572.5     33.1     28     43
GO:0000049; F:tRNA binding; IEA:InterPro.::GO:0009022; F:tRNA nucleotidyltransferase activity; IEA:EC.::GO:0004549; F:tRNA-specific ribonuclease activity; IEA:InterPro.
GO:0008033; P:tRNA processing; IEA:UniProtKB-KW.
94Q02E28    239   RNPH_PSEAB Ribonuclease PH OS=Pseudomonas aer...1572.5     33.1     28     43
GO:0000049; F:tRNA binding; IEA:InterPro.::GO:0009022; F:tRNA nucleotidyltransferase activity; IEA:EC.::GO:0004549; F:tRNA-specific ribonuclease activity; IEA:InterPro.
GO:0008033; P:tRNA processing; IEA:UniProtKB-KW.
95B7V5M5    239   RNPH_PSEA8 Ribonuclease PH OS=Pseudomonas aer...1572.5     33.1     28     43
GO:0000049; F:tRNA binding; IEA:InterPro.::GO:0009022; F:tRNA nucleotidyltransferase activity; IEA:EC.::GO:0004549; F:tRNA-specific ribonuclease activity; IEA:InterPro.
GO:0008033; P:tRNA processing; IEA:UniProtKB-KW.
96Q9K968    80   EX7S_BACHD Exodeoxyribonuclease 7 small subun...522.9     30.8     37     52GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0009318; C:exodeoxyribonuclease VII complex; IEA:InterPro.
GO:0008855; F:exodeoxyribonuclease VII activity; IEA:EC.
GO:0006308; P:DNA catabolic process; IEA:InterPro.
97O42872    242   RRP41_SCHPO Exosome complex component ski6 OS...463     32.7     39     54GO:0000177; C:cytoplasmic exosome (RNase complex); ISS:PomBase.::GO:0005829; C:cytosol; IDA:PomBase.::GO:0000176; C:nuclear exosome (RNase complex); ISS:PomBase.::GO:0005730; C:nucleolus; IEA:UniProtKB-SubCell.::GO:0005816; C:spindle pole body; IDA:PomBase.
GO:0000175; F:3'-5'-exoribonuclease activity; ISS:PomBase.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0000467; P:exonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA); ISS:PomBase.::GO:0070651; P:nonfunctional rRNA decay; ISS:PomBase.::GO:0071042; P:nuclear polyadenylation-dependent mRNA catabolic process; ISS:PomBase.::GO:0071035; P:nuclear polyadenylation-dependent rRNA catabolic process; ISS:PomBase.::GO:0071038; P:nuclear polyadenylation-dependent tRNA catabolic process; ISS:PomBase.::GO:0070478; P:nuclear-transcribed mRNA catabolic process, 3'-5' exonucleolytic nonsense-mediated decay; ISS:PomBase.::GO:0070481; P:nuclear-transcribed mRNA catabolic process, non-stop decay; ISS:PomBase.
98B1VVV6    245   RNPH_STRGG Ribonuclease PH OS=Streptomyces gr...994.8     32     29     43
GO:0000049; F:tRNA binding; IEA:InterPro.::GO:0009022; F:tRNA nucleotidyltransferase activity; IEA:EC.::GO:0004549; F:tRNA-specific ribonuclease activity; IEA:InterPro.
GO:0008033; P:tRNA processing; IEA:UniProtKB-KW.
99B0V5W8    238   RNPH_ACIBY Ribonuclease PH OS=Acinetobacter b...474.8     32     40     55
GO:0000049; F:tRNA binding; IEA:InterPro.::GO:0009022; F:tRNA nucleotidyltransferase activity; IEA:EC.::GO:0004549; F:tRNA-specific ribonuclease activity; IEA:InterPro.
GO:0008033; P:tRNA processing; IEA:UniProtKB-KW.
100A3M0U3    238   RNPH_ACIBT Ribonuclease PH OS=Acinetobacter b...474.8     32     40     55
GO:0000049; F:tRNA binding; IEA:InterPro.::GO:0009022; F:tRNA nucleotidyltransferase activity; IEA:EC.::GO:0004549; F:tRNA-specific ribonuclease activity; IEA:InterPro.
GO:0008033; P:tRNA processing; IEA:UniProtKB-KW.
101B0VMP4    238   RNPH_ACIBS Ribonuclease PH OS=Acinetobacter b...474.8     32     40     55
GO:0000049; F:tRNA binding; IEA:InterPro.::GO:0009022; F:tRNA nucleotidyltransferase activity; IEA:EC.::GO:0004549; F:tRNA-specific ribonuclease activity; IEA:InterPro.
GO:0008033; P:tRNA processing; IEA:UniProtKB-KW.
102B2I029    238   RNPH_ACIBC Ribonuclease PH OS=Acinetobacter b...474.8     32     40     55
GO:0000049; F:tRNA binding; IEA:InterPro.::GO:0009022; F:tRNA nucleotidyltransferase activity; IEA:EC.::GO:0004549; F:tRNA-specific ribonuclease activity; IEA:InterPro.
GO:0008033; P:tRNA processing; IEA:UniProtKB-KW.
103B7IBN8    238   RNPH_ACIB5 Ribonuclease PH OS=Acinetobacter b...474.8     32     40     55
GO:0000049; F:tRNA binding; IEA:InterPro.::GO:0009022; F:tRNA nucleotidyltransferase activity; IEA:EC.::GO:0004549; F:tRNA-specific ribonuclease activity; IEA:InterPro.
GO:0008033; P:tRNA processing; IEA:UniProtKB-KW.
104B7H2J6    238   RNPH_ACIB3 Ribonuclease PH OS=Acinetobacter b...474.8     32     40     55
GO:0000049; F:tRNA binding; IEA:InterPro.::GO:0009022; F:tRNA nucleotidyltransferase activity; IEA:EC.::GO:0004549; F:tRNA-specific ribonuclease activity; IEA:InterPro.
GO:0008033; P:tRNA processing; IEA:UniProtKB-KW.
105B8GIB2    305   GUAAB_METPE GMP synthase [glutamine-hydrolyzi...544.9     32.3     33     46
GO:0004066; F:asparagine synthase (glutamine-hydrolyzing) activity; IEA:InterPro.::GO:0005524; F:ATP binding; IEA:UniProtKB-KW.::GO:0003922; F:GMP synthase (glutamine-hydrolyzing) activity; IEA:EC.
GO:0006529; P:asparagine biosynthetic process; IEA:InterPro.::GO:0006177; P:GMP biosynthetic process; IEA:UniProtKB-KW.
106A5N2V9    248   RNPH_CLOK5 Ribonuclease PH OS=Clostridium klu...1619.1     31.2     29     40
GO:0000049; F:tRNA binding; IEA:InterPro.::GO:0009022; F:tRNA nucleotidyltransferase activity; IEA:EC.::GO:0004549; F:tRNA-specific ribonuclease activity; IEA:InterPro.
GO:0008033; P:tRNA processing; IEA:UniProtKB-KW.
107B9DWL2    248   RNPH_CLOK1 Ribonuclease PH OS=Clostridium klu...1619.1     31.2     29     40
GO:0000049; F:tRNA binding; IEA:InterPro.::GO:0009022; F:tRNA nucleotidyltransferase activity; IEA:EC.::GO:0004549; F:tRNA-specific ribonuclease activity; IEA:InterPro.
GO:0008033; P:tRNA processing; IEA:UniProtKB-KW.
records
Previous ‹‹ ›› Next Total records: 107 91 - 107
Elimate unknown annotation:
Filter for keyword on hit description:
Select upper E value:
Select lower bit score:
Select lower %idenity value:
Select lower %positive value:
Taxonomic division:
Lower limit on hit length:
Lower limit on alignment length::