Fungal Genome Collection
University of Nebraska Lincoln
School of Biological Sciences and Center for Plant Science Innovation
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UniProt_SwissProt BLAST: Single locus
Species:
Saccharomyces cerevisiae S288C
Locus:
YDR235W
Length:
544
Number of sequences:
5887
Description:
YDR235W PRP42 SGDID:S000002643, Chr IV from 933504-935138, Genome Release 64-1-1, Verified ORF, "U1 snRNP protein involved in splicing, required for U1 snRNP biogenesis; contains multiple tetriatricopeptide repeats"
rec.SubjectHit LengthDescriptionAlign.LenE valueBit score% ident.  % pos.GO associations
1Q03776    544   PRP42_YEAST U1 small nuclear ribonucleoprotei...5440     1103     100     100GO:0005685; C:U1 snRNP; IDA:SGD.::GO:0071004; C:U2-type prespliceosome; IDA:SGD.
GO:0003723; F:RNA binding; IDA:SGD.
GO:0000398; P:nuclear mRNA splicing, via spliceosome; IMP:SGD.
2O74970    612   PRP39_SCHPO Pre-mRNA-processing factor 39 OS=...3236e-21     100     23     44GO:0000243; C:commitment complex; ISS:PomBase.::GO:0005685; C:U1 snRNP; IDA:PomBase.
GO:0000395; P:nuclear mRNA 5'-splice site recognition; ISS:PomBase.
3Q4KLU2    641   PRP39_XENLA Pre-mRNA-processing factor 39 OS=...3620.000000000000002     82.8     22     47GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0005488; F:binding; IEA:InterPro.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.
4Q86UA1    669   PRP39_HUMAN Pre-mRNA-processing factor 39 OS=...3910.000000000000009     80.9     22     41GO:0005634; C:nucleus; IDA:HPA.
GO:0005488; F:binding; IEA:InterPro.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.
5Q8K2Z2    665   PRP39_MOUSE Pre-mRNA-processing factor 39 OS=...3670.00000000000004     79     22     42GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0005488; F:binding; IEA:InterPro.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.
6P39682    629   PRP39_YEAST Pre-mRNA-processing factor 39 OS=...2700.000000000009     71.2     24     45GO:0000243; C:commitment complex; IGI:SGD.::GO:0005685; C:U1 snRNP; IDA:SGD.::GO:0071004; C:U2-type prespliceosome; IDA:SGD.
GO:0000395; P:nuclear mRNA 5'-splice site recognition; IGI:SGD.
7Q1JPZ7    752   PRP39_DANRE Pre-mRNA-processing factor 39 OS=...3440.00000001     61.6     23     42GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0005488; F:binding; IEA:InterPro.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.
8Q7KRW8    1066   PRP39_DROME Pre-mRNA-processing factor 39 OS=...1340.000009     52.4     28     49GO:0005685; C:U1 snRNP; ISS:FlyBase.
GO:0031072; F:heat shock protein binding; IEA:InterPro.
GO:0000398; P:nuclear mRNA splicing, via spliceosome; ISS:FlyBase.::GO:0000381; P:regulation of alternative nuclear mRNA splicing, via spliceosome; IMP:FlyBase.
9O14233    733   RNA14_SCHPO mRNA 3'-end-processing protein rn...1410.019     41.6     23     43GO:0005739; C:mitochondrion; ISS:PomBase.::GO:0005847; C:mRNA cleavage and polyadenylation specificity factor complex; ISS:PomBase.
GO:0005488; F:binding; IEA:InterPro.
GO:0006379; P:mRNA cleavage; ISS:PomBase.::GO:0006378; P:mRNA polyadenylation; ISS:PomBase.
10Q5RDW9    717   CSTF3_PONAB Cleavage stimulation factor subun...4120.077     39.7     20     42GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0005488; F:binding; IEA:InterPro.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.
11Q6C8L8    806   RNA14_YARLI mRNA 3'-end-processing protein RN...1900.09     39.3     23     40GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0005488; F:binding; IEA:InterPro.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.
12Q12996    717   CSTF3_HUMAN Cleavage stimulation factor subun...3890.091     39.3     20     42GO:0005654; C:nucleoplasm; TAS:Reactome.
GO:0003723; F:RNA binding; TAS:ProtInc.
GO:0006379; P:mRNA cleavage; TAS:ProtInc.::GO:0006378; P:mRNA polyadenylation; TAS:ProtInc.::GO:0000398; P:nuclear mRNA splicing, via spliceosome; TAS:Reactome.::GO:0006369; P:termination of RNA polymerase II transcription; TAS:Reactome.
13Q99LI7    717   CSTF3_MOUSE Cleavage stimulation factor subun...3890.092     39.3     20     42GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0005488; F:binding; IEA:InterPro.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.
14Q2UKV8    1078   RNA14_ASPOR mRNA 3'-end-processing protein rn...1080.14     38.9     26     44GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0005488; F:binding; IEA:InterPro.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.
15Q5B3I8    1075   RNA14_EMENI mRNA 3'-end-processing protein rn...1080.45     37.4     28     45GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0005488; F:binding; IEA:InterPro.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.
16P25991    765   SUF_DROME Protein suppressor of forked OS=Dro...1240.56     37     22     48GO:0005848; C:mRNA cleavage stimulating factor complex; ISS:FlyBase.
GO:0006379; P:mRNA cleavage; ISS:FlyBase.
17Q02354    440   UTP6_YEAST U3 small nucleolar RNA-associated ...1030.71     36.2     31     46GO:0034388; C:Pwp2p-containing subcomplex of 90S preribosome; IDA:SGD.::GO:0032040; C:small-subunit processome; IDA:SGD.
GO:0030515; F:snoRNA binding; IPI:SGD.
GO:0000480; P:endonucleolytic cleavage in 5'-ETS of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA); IMP:SGD.::GO:0000447; P:endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA); IMP:SGD.::GO:0000472; P:endonucleolytic cleavage to generate mature 5'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA); IMP:SGD.
18Q4IR09    997   RNA14_GIBZE mRNA 3'-end-processing protein RN...1080.8     36.2     27     46GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.
19Q7S1Y0    1167   RNA14_NEUCR mRNA 3'-end-processing protein rn...1031.3     35.8     26     45GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0005488; F:binding; IEA:InterPro.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.
20Q4WXX4    1029   RNA14_ASPFU mRNA 3'-end-processing protein rn...1083.8     34.3     23     44GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0005488; F:binding; IEA:InterPro.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.
21Q8N3P4    1428   VPS8_HUMAN Vacuolar protein sorting-associate...1044.6     33.9     25     43
GO:0008270; F:zinc ion binding; IEA:InterPro.
22Q12340    786   YRM1_YEAST Zinc finger transcription factor Y...474.7     33.9     32     53GO:0005737; C:cytoplasm; IDA:SGD.::GO:0005634; C:nucleus; IDA:SGD.
GO:0043565; F:sequence-specific DNA binding; IDA:SGD.::GO:0000981; F:sequence-specific DNA binding RNA polymerase II transcription factor activity; IEA:InterPro.::GO:0008270; F:zinc ion binding; IEA:InterPro.
23Q6BJD8    740   RNA14_DEBHA mRNA 3'-end-processing protein RN...725.3     33.5     29     51GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0005488; F:binding; IEA:InterPro.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.
24Q147G5    436   CCA22_ARATH Cyclin-A2-2 OS=Arabidopsis thalia...736     33.1     29     49GO:0005634; C:nucleus; IEA:InterPro.
GO:0019901; F:protein kinase binding; IEA:InterPro.
GO:0007049; P:cell cycle; IEA:UniProtKB-KW.::GO:0051301; P:cell division; IEA:UniProtKB-KW.::GO:0000079; P:regulation of cyclin-dependent protein kinase activity; IEA:InterPro.::GO:0010389; P:regulation of G2/M transition of mitotic cell cycle; IGI:TAIR.
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