Fungal Genome Collection
University of Nebraska Lincoln
School of Biological Sciences and Center for Plant Science Innovation
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UniProt_SwissProt BLAST: Single locus
Species:
Saccharomyces cerevisiae S288C
Locus:
YDR228C
Length:
626
Number of sequences:
5887
Description:
YDR228C PCF11 SGDID:S000002636, Chr IV from 923806-921926, Genome Release 64-1-1, reverse complement, Verified ORF, "mRNA 3' end processing factor, essential component of cleavage and polyadenylation factor IA (CF IA), involved in pre-mRNA 3' end processing and in transcription termination; binds C-terminal domain of largest subunit of RNA pol II (Rpo21p); required for gene looping"
rec.SubjectHit LengthDescriptionAlign.LenE valueBit score% ident.  % pos.GO associations
1P39081    626   PCF11_YEAST Protein PCF11 OS=Saccharomyces ce...6260     1293     100     100GO:0005849; C:mRNA cleavage factor complex; IPI:SGD.
GO:0003729; F:mRNA binding; IDA:SGD.::GO:0000993; F:RNA polymerase II core binding; IDA:SGD.
GO:0006379; P:mRNA cleavage; IDA:SGD.::GO:0006378; P:mRNA polyadenylation; IDA:SGD.::GO:0006355; P:regulation of transcription, DNA-dependent; IEA:UniProtKB-KW.::GO:0006369; P:termination of RNA polymerase II transcription; IDA:SGD.
2Q10237    638   YD14_SCHPO Uncharacterized protein C4G9.04c O...2228e-19     94     29     45GO:0005849; C:mRNA cleavage factor complex; ISS:PomBase.
GO:0006379; P:mRNA cleavage; ISS:PomBase.::GO:0006378; P:mRNA polyadenylation; ISS:PomBase.::GO:0006369; P:termination of RNA polymerase II transcription; ISS:PomBase.
3O94913    1555   PCF11_HUMAN Pre-mRNA cleavage complex 2 prote...2020.00000002     61.6     27     42GO:0005849; C:mRNA cleavage factor complex; NAS:UniProtKB.
GO:0031124; P:mRNA 3'-end processing; TAS:Reactome.::GO:0006379; P:mRNA cleavage; NAS:UniProtKB.::GO:0000398; P:nuclear mRNA splicing, via spliceosome; TAS:Reactome.::GO:0006369; P:termination of RNA polymerase II transcription; TAS:Reactome.
4Q09345    823   PCF11_CAEEL Polyadenylation and cleavage fact...2270.0000005     56.6     22     36
GO:0006915; P:apoptotic process; IMP:WormBase.::GO:0008340; P:determination of adult lifespan; IMP:WormBase.::GO:0009792; P:embryo development ending in birth or egg hatching; IMP:WormBase.::GO:0002119; P:nematode larval development; IMP:WormBase.::GO:0000003; P:reproduction; IMP:WormBase.
5Q9UPN6    1271   SCAF8_HUMAN Protein SCAF8 OS=Homo sapiens (Hu...1180.0001     48.9     30     49GO:0016363; C:nuclear matrix; ISS:UniProtKB.::GO:0005681; C:spliceosomal complex; IEA:UniProtKB-KW.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.::GO:0043175; F:RNA polymerase core enzyme binding; IPI:UniProtKB.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.
6Q63623    1268   SCAF8_RAT Protein SCAF8 OS=Rattus norvegicus ...1180.0002     48.5     30     49GO:0016363; C:nuclear matrix; IDA:UniProtKB.::GO:0005681; C:spliceosomal complex; IEA:UniProtKB-KW.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0019904; F:protein domain specific binding; IMP:RGD.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006397; P:mRNA processing; IMP:RGD.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.::GO:0006366; P:transcription from RNA polymerase II promoter; IMP:RGD.
7Q6DID3    1268   SCAF8_MOUSE Protein SCAF8 OS=Mus musculus (Mo...1180.0002     48.5     30     49GO:0016363; C:nuclear matrix; ISS:UniProtKB.::GO:0005681; C:spliceosomal complex; IEA:UniProtKB-KW.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.
8O95104    1147   SFR15_HUMAN Splicing factor, arginine/serine-...970.006     43.5     27     52GO:0005634; C:nucleus; IDA:HPA.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
9Q9NU63    452   ZFP57_HUMAN Zinc finger protein 57 homolog OS...790.19     38.1     33     52GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0003677; F:DNA binding; IEA:UniProtKB-KW.::GO:0008270; F:zinc ion binding; IEA:InterPro.
GO:0043045; P:DNA methylation involved in embryo development; IMP:UniProtKB.::GO:0006349; P:regulation of gene expression by genetic imprinting; IMP:UniProtKB.::GO:0006355; P:regulation of transcription, DNA-dependent; IEA:UniProtKB-KW.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW.
10Q8ILR9    4662   YPF17_PLAF7 Protein PF14_0175 OS=Plasmodium f...930.31     38.1     35     65GO:0016021; C:integral to membrane; IEA:UniProtKB-KW.
GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
11Q4V8A8    633   ZFP90_RAT Zinc finger protein 90 OS=Rattus no...821.2     35.8     33     45GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0003677; F:DNA binding; IEA:UniProtKB-KW.::GO:0008270; F:zinc ion binding; IEA:InterPro.
GO:0045893; P:positive regulation of transcription, DNA-dependent; IMP:UniProtKB.
12P33332    1336   SEC3_YEAST Exocyst complex component SEC3 OS=...961.2     36.2     26     65GO:0005935; C:cellular bud neck; IDA:SGD.::GO:0005934; C:cellular bud tip; IDA:SGD.::GO:0000145; C:exocyst; IDA:SGD.::GO:0000131; C:incipient cellular bud site; IDA:SGD.::GO:0043332; C:mating projection tip; IDA:SGD.
GO:0005546; F:phosphatidylinositol-4,5-bisphosphate binding; IDA:SGD.
GO:0007121; P:bipolar cellular bud site selection; TAS:SGD.::GO:0006893; P:Golgi to plasma membrane transport; TAS:SGD.::GO:0015031; P:protein transport; IEA:UniProtKB-KW.::GO:0006904; P:vesicle docking involved in exocytosis; TAS:SGD.::GO:0006906; P:vesicle fusion; TAS:SGD.
13Q00911    478   EGR4_RAT Early growth response protein 4 OS=R...381.2     35.8     42     53GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0000977; F:RNA polymerase II regulatory region sequence-specific DNA binding; IDA:RGD.::GO:0008270; F:zinc ion binding; IEA:InterPro.
GO:0071363; P:cellular response to growth factor stimulus; IEP:RGD.::GO:0045944; P:positive regulation of transcription from RNA polymerase II promoter; IDA:RGD.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW.
14Q9WUF2    478   EGR4_MOUSE Early growth response protein 4 OS...381.2     35.8     42     53GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0003677; F:DNA binding; IEA:UniProtKB-KW.::GO:0008270; F:zinc ion binding; IEA:InterPro.
GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW.
15Q8BKX7    478   ZN410_MOUSE Zinc finger protein 410 OS=Mus mu...1001.3     35.8     26     45GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0003677; F:DNA binding; IEA:UniProtKB-KW.::GO:0008270; F:zinc ion binding; IEA:InterPro.
GO:0006355; P:regulation of transcription, DNA-dependent; IEA:UniProtKB-KW.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW.
16Q05215    486   EGR4_HUMAN Early growth response protein 4 OS...381.3     35.8     42     53GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0003677; F:DNA binding; IEA:UniProtKB-KW.::GO:0003700; F:sequence-specific DNA binding transcription factor activity; NAS:ProtInc.::GO:0008270; F:zinc ion binding; IEA:InterPro.
GO:0008284; P:positive regulation of cell proliferation; TAS:ProtInc.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW.
17Q6A085    867   ZN629_MOUSE Zinc finger protein 629 OS=Mus mu...1621.3     35.8     29     44GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0003677; F:DNA binding; IEA:UniProtKB-KW.::GO:0008270; F:zinc ion binding; IEA:InterPro.
GO:0006355; P:regulation of transcription, DNA-dependent; IEA:UniProtKB-KW.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW.
18Q9GL32    482   EGR4_BOVIN Early growth response protein 4 OS...381.5     35.4     42     53GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0003677; F:DNA binding; IEA:UniProtKB-KW.::GO:0008270; F:zinc ion binding; IEA:InterPro.
GO:0006355; P:regulation of transcription, DNA-dependent; IEA:UniProtKB-KW.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW.
19Q6P3V2    769   Z585A_HUMAN Zinc finger protein 585A OS=Homo ...851.6     35.4     31     48GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0003676; F:nucleic acid binding; IEA:InterPro.::GO:0008270; F:zinc ion binding; IEA:InterPro.
GO:0006355; P:regulation of transcription, DNA-dependent; IEA:UniProtKB-KW.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW.
20Q5RDX1    737   Z585A_PONAB Zinc finger protein 585A OS=Pongo...852.3     35     31     48GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0003676; F:nucleic acid binding; IEA:InterPro.::GO:0008270; F:zinc ion binding; IEA:InterPro.
GO:0006355; P:regulation of transcription, DNA-dependent; IEA:UniProtKB-KW.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW.
21Q9Z1D8    819   ZKSC5_MOUSE Zinc finger protein with KRAB and...533     34.7     36     53GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0003677; F:DNA binding; IEA:UniProtKB-KW.::GO:0003700; F:sequence-specific DNA binding transcription factor activity; IEA:InterPro.::GO:0008270; F:zinc ion binding; IEA:InterPro.
GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW.::GO:0016032; P:viral reproduction; IEA:InterPro.
22Q9UEG4    869   ZN629_HUMAN Zinc finger protein 629 OS=Homo s...1593.2     34.7     26     42GO:0005634; C:nucleus; IDA:HPA.
GO:0003677; F:DNA binding; IEA:UniProtKB-KW.::GO:0008270; F:zinc ion binding; IEA:InterPro.
GO:0006355; P:regulation of transcription, DNA-dependent; IEA:UniProtKB-KW.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW.
23Q5EAC5    467   ZN410_BOVIN Zinc finger protein 410 OS=Bos ta...755.3     33.9     32     47GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0003677; F:DNA binding; IEA:UniProtKB-KW.::GO:0008270; F:zinc ion binding; IEA:InterPro.
GO:0006355; P:regulation of transcription, DNA-dependent; IEA:UniProtKB-KW.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW.
24Q8IUG5    2567   MY18B_HUMAN Unconventional myosin-XVIIIb OS=H...1005.6     33.9     26     51GO:0005634; C:nucleus; IDA:HPA.::GO:0030017; C:sarcomere; IEA:UniProtKB-SubCell.::GO:0016461; C:unconventional myosin complex; IDA:UniProtKB.
GO:0003779; F:actin binding; IEA:UniProtKB-KW.::GO:0005524; F:ATP binding; IEA:UniProtKB-KW.::GO:0003774; F:motor activity; IEA:InterPro.
25Q9UTE3    620   SEB1_SCHPO Rpb7-binding protein seb1 OS=Schiz...696.9     33.5     32     51GO:0035649; C:Nrd1 complex; ISS:PomBase.::GO:0005634; C:nucleus; IDA:PomBase.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0005515; F:protein binding; IPI:IntAct.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0031123; P:RNA 3'-end processing; ISS:PomBase.::GO:0030847; P:termination of RNA polymerase II transcription, exosome-dependent; ISS:PomBase.
26Q15149    4684   PLEC_HUMAN Plectin OS=Homo sapiens (Human). G...1367.9     33.5     22     40GO:0005829; C:cytosol; TAS:Reactome.::GO:0005925; C:focal adhesion; IDA:HPA.::GO:0030056; C:hemidesmosome; IDA:UniProtKB.::GO:0045111; C:intermediate filament cytoskeleton; IDA:HPA.::GO:0042383; C:sarcolemma; IDA:UniProtKB.
GO:0003779; F:actin binding; IEA:UniProtKB-KW.::GO:0008307; F:structural constituent of muscle; TAS:ProtInc.
GO:0006921; P:cellular component disassembly involved in apoptotic process; TAS:Reactome.::GO:0031581; P:hemidesmosome assembly; IDA:UniProtKB.
27P17039    623   ZNF30_HUMAN Zinc finger protein 30 OS=Homo sa...488.3     33.1     38     52GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0003677; F:DNA binding; IEA:UniProtKB-KW.::GO:0008270; F:zinc ion binding; IEA:InterPro.
GO:0006355; P:regulation of transcription, DNA-dependent; IEA:UniProtKB-KW.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW.
28P10076    861   ZFP26_MOUSE Zinc finger protein 26 OS=Mus mus...1208.4     33.1     28     38GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0003677; F:DNA binding; IEA:UniProtKB-KW.::GO:0008270; F:zinc ion binding; IEA:InterPro.
GO:0006355; P:regulation of transcription, DNA-dependent; IEA:InterPro.
29P51522    516   ZNF83_HUMAN Zinc finger protein 83 OS=Homo sa...579.8     32.7     35     53GO:0005634; C:nucleus; NAS:UniProtKB.
GO:0003677; F:DNA binding; IEA:UniProtKB-KW.::GO:0003700; F:sequence-specific DNA binding transcription factor activity; NAS:UniProtKB.::GO:0008270; F:zinc ion binding; IEA:InterPro.
GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW.
records
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