UniProt_SwissProt BLAST: Single locus

Species:

Saccharomyces cerevisiae S288C

Locus:

YDR045C

Length:

110

Number of sequences:

5887

Description:

YDR045C RPC11 SGDID:S000002452, Chr IV from 548310-547978, Genome Release 64-1-1, reverse complement, Verified ORF, "RNA polymerase III subunit C11; mediates pol III RNA cleavage activity and is important for termination of transcription; homologous to TFIIS"

rec.	Subject	Hit Length	Description	Align.Len	E value	Bit score	% ident.	% pos.	GO associations
1	Q04307	110	RPC10_YEAST DNA-directed RNA polymerase III s...	110	9e-79	233	100	100	GO:0005666; C:DNA-directed RNA polymerase III complex; IDA:SGD.
									GO:0003677; F:DNA binding; IEA:InterPro.::GO:0003899; F:DNA-directed RNA polymerase activity; IEA:UniProtKB-KW.::GO:0008270; F:zinc ion binding; IEA:InterPro.
									GO:0006386; P:termination of RNA polymerase III transcription; IMP:SGD.::GO:0042797; P:tRNA transcription from RNA polymerase III promoter; IMP:SGD.
2	O13896	109	RPC10_SCHPO DNA-directed RNA polymerase III s...	111	2e-32	115	49	64	GO:0005829; C:cytosol; IDA:PomBase.::GO:0005666; C:DNA-directed RNA polymerase III complex; TAS:PomBase.
									GO:0003677; F:DNA binding; IEA:InterPro.::GO:0003899; F:DNA-directed RNA polymerase activity; TAS:PomBase.::GO:0008270; F:zinc ion binding; IEA:InterPro.
									GO:0006384; P:transcription initiation from RNA polymerase III promoter; TAS:PomBase.::GO:0042779; P:tRNA 3'-trailer cleavage; IMP:PomBase.
3	Q9CQZ7	108	RPC10_MOUSE DNA-directed RNA polymerase III s...	113	2e-28	105	52	61	GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
									GO:0003677; F:DNA binding; IEA:InterPro.::GO:0003899; F:DNA-directed RNA polymerase activity; IEA:UniProtKB-KW.::GO:0008270; F:zinc ion binding; IEA:InterPro.
									GO:0045087; P:innate immune response; IEA:UniProtKB-KW.::GO:0009615; P:response to virus; IEA:UniProtKB-KW.
4	Q9Y2Y1	108	RPC10_HUMAN DNA-directed RNA polymerase III s...	113	3e-28	104	51	61	GO:0005666; C:DNA-directed RNA polymerase III complex; TAS:ProtInc.
									GO:0003677; F:DNA binding; IEA:InterPro.::GO:0003899; F:DNA-directed RNA polymerase activity; TAS:ProtInc.::GO:0008270; F:zinc ion binding; IEA:InterPro.
									GO:0045087; P:innate immune response; IEA:UniProtKB-KW.::GO:0009615; P:response to virus; IEA:UniProtKB-KW.::GO:0006386; P:termination of RNA polymerase III transcription; TAS:Reactome.::GO:0006385; P:transcription elongation from RNA polymerase III promoter; TAS:Reactome.
5	Q2M2S7	108	RPC10_BOVIN DNA-directed RNA polymerase III s...	113	2e-26	99.8	50	59	GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
									GO:0003677; F:DNA binding; IEA:InterPro.::GO:0003899; F:DNA-directed RNA polymerase activity; IEA:UniProtKB-KW.::GO:0008270; F:zinc ion binding; IEA:InterPro.
									GO:0045087; P:innate immune response; IEA:UniProtKB-KW.::GO:0009615; P:response to virus; IEA:UniProtKB-KW.
6	Q56254	110	RPOM_THECE DNA-directed RNA polymerase subuni...	115	1e-16	74.3	38	54
									GO:0003677; F:DNA binding; IEA:InterPro.::GO:0003899; F:DNA-directed RNA polymerase activity; IEA:UniProtKB-KW.::GO:0003700; F:sequence-specific DNA binding transcription factor activity; IEA:InterPro.::GO:0008270; F:zinc ion binding; IEA:InterPro.
7	Q58548	108	RPOM_METJA DNA-directed RNA polymerase subuni...	114	3e-16	73.2	37	53
									GO:0003677; F:DNA binding; IEA:InterPro.::GO:0003899; F:DNA-directed RNA polymerase activity; IEA:UniProtKB-KW.::GO:0003700; F:sequence-specific DNA binding transcription factor activity; IEA:InterPro.::GO:0008270; F:zinc ion binding; IEA:InterPro.
8	Q07271	111	RPOM_SULAC DNA-directed RNA polymerase subuni...	111	0.00000000001	61.2	36	48
									GO:0003677; F:DNA binding; IEA:InterPro.::GO:0003899; F:DNA-directed RNA polymerase activity; IEA:UniProtKB-KW.::GO:0003700; F:sequence-specific DNA binding transcription factor activity; IEA:InterPro.::GO:0008270; F:zinc ion binding; IEA:InterPro.
9	O29033	103	RPOM_ARCFU DNA-directed RNA polymerase subuni...	109	0.00000000003	59.7	32	50
									GO:0003677; F:DNA binding; IEA:InterPro.::GO:0003899; F:DNA-directed RNA polymerase activity; IEA:UniProtKB-KW.::GO:0003700; F:sequence-specific DNA binding transcription factor activity; IEA:InterPro.::GO:0008270; F:zinc ion binding; IEA:InterPro.
10	P36958	129	RPB9_DROME DNA-directed RNA polymerase II sub...	114	0.000000002	55.1	33	48	GO:0005665; C:DNA-directed RNA polymerase II, core complex; IDA:FlyBase.
									GO:0003677; F:DNA binding; IEA:InterPro.::GO:0003899; F:DNA-directed RNA polymerase activity; ISS:FlyBase.::GO:0008270; F:zinc ion binding; IEA:InterPro.
									GO:0007067; P:mitosis; IMP:FlyBase.::GO:0007095; P:mitotic cell cycle G2/M transition DNA damage checkpoint; IGI:FlyBase.::GO:0006366; P:transcription from RNA polymerase II promoter; ISS:FlyBase.
11	Q5UQS8	173	TFS2_MIMIV Transcription factor S-II-related ...	73	0.00000003	52	40	53
									GO:0003676; F:nucleic acid binding; IEA:InterPro.::GO:0008270; F:zinc ion binding; IEA:InterPro.
									GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW.
12	Q32P73	125	RPB9_BOVIN DNA-directed RNA polymerase II sub...	112	0.00000005	51.2	29	46	GO:0005665; C:DNA-directed RNA polymerase II, core complex; ISS:UniProtKB.
									GO:0003677; F:DNA binding; IEA:InterPro.::GO:0003899; F:DNA-directed RNA polymerase activity; IEA:UniProtKB-KW.::GO:0008270; F:zinc ion binding; IEA:InterPro.
									GO:0006468; P:protein phosphorylation; ISS:GOC.::GO:0006366; P:transcription from RNA polymerase II promoter; ISS:UniProtKB.
13	P60899	125	RPB9_PIG DNA-directed RNA polymerase II subun...	112	0.00000005	50.8	29	46	GO:0005665; C:DNA-directed RNA polymerase II, core complex; ISS:UniProtKB.
									GO:0003677; F:DNA binding; IEA:InterPro.::GO:0003899; F:DNA-directed RNA polymerase activity; IEA:UniProtKB-KW.::GO:0008270; F:zinc ion binding; IEA:InterPro.
									GO:0006366; P:transcription from RNA polymerase II promoter; ISS:UniProtKB.
14	P60898	125	RPB9_MOUSE DNA-directed RNA polymerase II sub...	112	0.00000005	50.8	29	46	GO:0005665; C:DNA-directed RNA polymerase II, core complex; ISS:UniProtKB.
									GO:0003677; F:DNA binding; IEA:InterPro.::GO:0003899; F:DNA-directed RNA polymerase activity; IEA:UniProtKB-KW.::GO:0008270; F:zinc ion binding; IEA:InterPro.
									GO:0006366; P:transcription from RNA polymerase II promoter; ISS:UniProtKB.
15	P36954	125	RPB9_HUMAN DNA-directed RNA polymerase II sub...	112	0.00000005	50.8	29	46	GO:0005665; C:DNA-directed RNA polymerase II, core complex; IDA:UniProtKB.
									GO:0003677; F:DNA binding; IEA:InterPro.::GO:0003899; F:DNA-directed RNA polymerase activity; TAS:ProtInc.::GO:0008270; F:zinc ion binding; TAS:ProtInc.
									GO:0006370; P:mRNA capping; TAS:Reactome.::GO:0000398; P:nuclear mRNA splicing, via spliceosome; TAS:Reactome.::GO:0050434; P:positive regulation of viral transcription; TAS:Reactome.::GO:0006468; P:protein phosphorylation; IDA:GOC.::GO:0006368; P:transcription elongation from RNA polymerase II promoter; TAS:Reactome.::GO:0006367; P:transcription initiation from RNA polymerase II promoter; TAS:Reactome.::GO:0006283; P:transcription-coupled nucleotide-excision repair; TAS:Reactome.::GO:0016032; P:viral reproduction; TAS:Reactome.
16	O74635	113	RPB9_SCHPO DNA-directed RNA polymerase II sub...	113	0.0000001	50.1	31	42	GO:0005829; C:cytosol; IDA:PomBase.::GO:0016591; C:DNA-directed RNA polymerase II, holoenzyme; TAS:PomBase.
									GO:0003677; F:DNA binding; IEA:InterPro.::GO:0003899; F:DNA-directed RNA polymerase activity; IEA:UniProtKB-KW.::GO:0008270; F:zinc ion binding; IEA:InterPro.
									GO:0006366; P:transcription from RNA polymerase II promoter; IC:PomBase.::GO:0006283; P:transcription-coupled nucleotide-excision repair; ISS:PomBase.
17	O27369	104	RPOM_METTH DNA-directed RNA polymerase subuni...	112	0.0000001	49.7	29	47
									GO:0003677; F:DNA binding; IEA:InterPro.::GO:0003899; F:DNA-directed RNA polymerase activity; IEA:UniProtKB-KW.::GO:0003700; F:sequence-specific DNA binding transcription factor activity; IEA:InterPro.::GO:0008270; F:zinc ion binding; IEA:InterPro.
18	P20232	313	TFS2_DROME Transcription elongation factor S-...	66	0.0000003	50.8	44	52	GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
									GO:0003677; F:DNA binding; IEA:UniProtKB-KW.::GO:0003746; F:translation elongation factor activity; IEA:InterPro.::GO:0008270; F:zinc ion binding; IEA:InterPro.
									GO:0032784; P:regulation of transcription elongation, DNA-dependent; IEA:InterPro.::GO:0006357; P:regulation of transcription from RNA polymerase II promoter; IEA:InterPro.::GO:0006354; P:transcription elongation, DNA-dependent; IEA:InterPro.
19	P52652	308	TFS2_CAEEL Putative transcription elongation ...	34	0.0000007	49.7	59	76	GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
									GO:0003677; F:DNA binding; IEA:UniProtKB-KW.::GO:0003746; F:translation elongation factor activity; IEA:InterPro.::GO:0008270; F:zinc ion binding; IEA:InterPro.
									GO:0032784; P:regulation of transcription elongation, DNA-dependent; IEA:InterPro.::GO:0006357; P:regulation of transcription from RNA polymerase II promoter; IEA:InterPro.::GO:0006354; P:transcription elongation, DNA-dependent; IEA:InterPro.
20	P49373	293	TFS2_SCHPO Transcription elongation factor S-...	34	0.0000008	49.3	56	74	GO:0005634; C:nucleus; IDA:PomBase.
									GO:0000991; F:core RNA polymerase II binding transcription factor activity; IC:PomBase.::GO:0003677; F:DNA binding; IEA:UniProtKB-KW.::GO:0005515; F:protein binding; IPI:PomBase.::GO:0003746; F:translation elongation factor activity; IEA:InterPro.::GO:0008270; F:zinc ion binding; IEA:InterPro.
									GO:0002182; P:cytoplasmic translational elongation; NAS:PomBase.::GO:0006379; P:mRNA cleavage; ISS:PomBase.::GO:0032784; P:regulation of transcription elongation, DNA-dependent; IEA:InterPro.::GO:0006357; P:regulation of transcription from RNA polymerase II promoter; IEA:InterPro.::GO:0006368; P:transcription elongation from RNA polymerase II promoter; ISS:PomBase.
21	Q6GZP4	92	081R_FRG3G Putative transcription elongation ...	47	0.000001	46.6	45	53
									GO:0003746; F:translation elongation factor activity; IEA:UniProtKB-KW.::GO:0008270; F:zinc ion binding; IEA:InterPro.
									GO:0006351; P:transcription, DNA-dependent; IEA:InterPro.
22	P32529	125	RPA12_YEAST DNA-directed RNA polymerase I sub...	45	0.000003	45.8	44	62	GO:0005736; C:DNA-directed RNA polymerase I complex; IDA:SGD.
									GO:0003677; F:DNA binding; IEA:InterPro.::GO:0003899; F:DNA-directed RNA polymerase activity; IEA:UniProtKB-KW.::GO:0008270; F:zinc ion binding; IEA:InterPro.
									GO:0006363; P:termination of RNA polymerase I transcription; IMP:SGD.::GO:0042790; P:transcription of nuclear large rRNA transcript from RNA polymerase I promoter; IGI:SGD.
23	P07273	309	TFS2_YEAST Transcription elongation factor S-...	34	0.000004	47.4	56	71	GO:0005634; C:nucleus; IDA:SGD.
									GO:0001139; F:core RNA polymerase II recruiting transcription factor activity; IMP:SGD.::GO:0000993; F:RNA polymerase II core binding; IPI:SGD.::GO:0001012; F:RNA polymerase II regulatory region DNA binding; IDA:SGD.::GO:0003746; F:translation elongation factor activity; IEA:InterPro.::GO:0008270; F:zinc ion binding; IEA:InterPro.
									GO:0001193; P:maintenance of transcriptional fidelity during DNA-dependent transcription elongation from RNA polymerase II promoter; IMP:SGD.::GO:0006379; P:mRNA cleavage; IDA:SGD.::GO:0045899; P:positive regulation of RNA polymerase II transcriptional preinitiation complex assembly; IMP:SGD.::GO:0032968; P:positive regulation of transcription elongation from RNA polymerase II promoter; IDA:SGD.::GO:0031440; P:regulation of mRNA 3'-end processing; IMP:SGD.::GO:0031564; P:transcription antitermination; IDA:SGD.::GO:0006362; P:transcription elongation from RNA polymerase I promoter; IDA:SGD.::GO:0042797; P:tRNA transcription from RNA polymerase III promoter; IMP:SGD.
24	Q29RL9	301	TCEA1_BOVIN Transcription elongation factor A...	34	0.000006	47	56	71
									GO:0003677; F:DNA binding; IEA:UniProtKB-KW.::GO:0003746; F:translation elongation factor activity; IEA:InterPro.::GO:0008270; F:zinc ion binding; IEA:InterPro.
									GO:0032784; P:regulation of transcription elongation, DNA-dependent; IEA:InterPro.::GO:0006354; P:transcription elongation, DNA-dependent; IEA:InterPro.
25	P10711	301	TCEA1_MOUSE Transcription elongation factor A...	34	0.000006	47	56	71	GO:0005654; C:nucleoplasm; IDA:MGI.
									GO:0003677; F:DNA binding; IEA:UniProtKB-KW.::GO:0005515; F:protein binding; IPI:UniProtKB.::GO:0003746; F:translation elongation factor activity; IEA:InterPro.::GO:0008270; F:zinc ion binding; IEA:InterPro.
									GO:0030218; P:erythrocyte differentiation; IMP:MGI.::GO:0045944; P:positive regulation of transcription from RNA polymerase II promoter; IDA:MGI.::GO:0032784; P:regulation of transcription elongation, DNA-dependent; IEA:InterPro.::GO:0006354; P:transcription elongation, DNA-dependent; IEA:InterPro.
26	Q4KLL0	301	TCEA1_RAT Transcription elongation factor A p...	34	0.000006	47	56	71	GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
									GO:0003677; F:DNA binding; IEA:UniProtKB-KW.::GO:0003746; F:translation elongation factor activity; IEA:InterPro.::GO:0008270; F:zinc ion binding; IEA:InterPro.
									GO:0032784; P:regulation of transcription elongation, DNA-dependent; IEA:InterPro.::GO:0006357; P:regulation of transcription from RNA polymerase II promoter; IEA:InterPro.::GO:0006354; P:transcription elongation, DNA-dependent; IEA:InterPro.
27	P23193	301	TCEA1_HUMAN Transcription elongation factor A...	34	0.000006	47	56	71	GO:0005730; C:nucleolus; IDA:HPA.::GO:0005654; C:nucleoplasm; TAS:Reactome.
									GO:0003677; F:DNA binding; IEA:UniProtKB-KW.::GO:0003746; F:translation elongation factor activity; IEA:InterPro.::GO:0008270; F:zinc ion binding; IEA:InterPro.
									GO:0050434; P:positive regulation of viral transcription; TAS:Reactome.::GO:0032784; P:regulation of transcription elongation, DNA-dependent; IEA:InterPro.::GO:0006368; P:transcription elongation from RNA polymerase II promoter; TAS:Reactome.::GO:0006283; P:transcription-coupled nucleotide-excision repair; TAS:Reactome.::GO:0016032; P:viral reproduction; TAS:Reactome.
28	Q2KI09	349	TCEA3_BOVIN Transcription elongation factor A...	34	0.000009	46.6	56	71	GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
									GO:0003677; F:DNA binding; IEA:UniProtKB-KW.::GO:0003746; F:translation elongation factor activity; IEA:InterPro.::GO:0008270; F:zinc ion binding; IEA:InterPro.
									GO:0032784; P:regulation of transcription elongation, DNA-dependent; IEA:InterPro.::GO:0006357; P:regulation of transcription from RNA polymerase II promoter; IEA:InterPro.::GO:0006354; P:transcription elongation, DNA-dependent; IEA:InterPro.
29	P23881	347	TCEA3_MOUSE Transcription elongation factor A...	44	0.000009	46.6	48	59	GO:0005634; C:nucleus; IDA:MGI.
									GO:0003677; F:DNA binding; IEA:UniProtKB-KW.::GO:0003746; F:translation elongation factor activity; IEA:InterPro.::GO:0008270; F:zinc ion binding; IEA:InterPro.
									GO:0032784; P:regulation of transcription elongation, DNA-dependent; IEA:InterPro.::GO:0006357; P:regulation of transcription from RNA polymerase II promoter; IEA:InterPro.::GO:0006354; P:transcription elongation, DNA-dependent; IEA:InterPro.
30	Q6MFY5	123	RPA12_RAT DNA-directed RNA polymerase I subun...	116	0.00001	43.9	32	48	GO:0005730; C:nucleolus; IEA:UniProtKB-SubCell.
									GO:0003899; F:DNA-directed RNA polymerase activity; IEA:UniProtKB-KW.::GO:0003676; F:nucleic acid binding; IEA:InterPro.::GO:0008270; F:zinc ion binding; IEA:InterPro.
31	O75764	348	TCEA3_HUMAN Transcription elongation factor A...	34	0.00002	45.8	56	71	GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
									GO:0003677; F:DNA binding; IEA:UniProtKB-KW.::GO:0003746; F:translation elongation factor activity; IEA:InterPro.::GO:0008270; F:zinc ion binding; IEA:InterPro.
									GO:0032784; P:regulation of transcription elongation, DNA-dependent; IEA:InterPro.::GO:0006357; P:regulation of transcription from RNA polymerase II promoter; IEA:InterPro.::GO:0006354; P:transcription elongation, DNA-dependent; IEA:InterPro.

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