Fungal Genome Collection
University of Nebraska Lincoln
School of Biological Sciences and Center for Plant Science Innovation
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UniProt_SwissProt BLAST: Single locus
Species:
Saccharomyces cerevisiae S288C
Locus:
YDR045C
Length:
110
Number of sequences:
5887
Description:
YDR045C RPC11 SGDID:S000002452, Chr IV from 548310-547978, Genome Release 64-1-1, reverse complement, Verified ORF, "RNA polymerase III subunit C11; mediates pol III RNA cleavage activity and is important for termination of transcription; homologous to TFIIS"
rec.SubjectHit LengthDescriptionAlign.LenE valueBit score% ident.  % pos.GO associations
31O75764    348   TCEA3_HUMAN Transcription elongation factor A...340.00002     45.8     56     71GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0003677; F:DNA binding; IEA:UniProtKB-KW.::GO:0003746; F:translation elongation factor activity; IEA:InterPro.::GO:0008270; F:zinc ion binding; IEA:InterPro.
GO:0032784; P:regulation of transcription elongation, DNA-dependent; IEA:InterPro.::GO:0006357; P:regulation of transcription from RNA polymerase II promoter; IEA:InterPro.::GO:0006354; P:transcription elongation, DNA-dependent; IEA:InterPro.
32Q791N7    123   RPA12_MOUSE DNA-directed RNA polymerase I sub...1150.00002     43.5     31     45GO:0005730; C:nucleolus; IEA:UniProtKB-SubCell.::GO:0005654; C:nucleoplasm; TAS:Reactome.
GO:0003899; F:DNA-directed RNA polymerase activity; IEA:UniProtKB-KW.::GO:0003676; F:nucleic acid binding; IEA:InterPro.::GO:0008270; F:zinc ion binding; IEA:InterPro.
33Q15560    299   TCEA2_HUMAN Transcription elongation factor A...340.00003     45.1     53     71GO:0008023; C:transcription elongation factor complex; NAS:UniProtKB.
GO:0003677; F:DNA binding; IEA:UniProtKB-KW.::GO:0005515; F:protein binding; IPI:IntAct.::GO:0003746; F:translation elongation factor activity; IEA:InterPro.::GO:0008270; F:zinc ion binding; IEA:InterPro.
GO:0032784; P:regulation of transcription elongation, DNA-dependent; NAS:UniProtKB.::GO:0006357; P:regulation of transcription from RNA polymerase II promoter; IEA:InterPro.::GO:0006354; P:transcription elongation, DNA-dependent; NAS:UniProtKB.
34Q148K0    300   TCEA2_BOVIN Transcription elongation factor A...340.00003     45.1     53     71GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0003677; F:DNA binding; IEA:UniProtKB-KW.::GO:0003746; F:translation elongation factor activity; IEA:InterPro.::GO:0008270; F:zinc ion binding; IEA:InterPro.
GO:0032784; P:regulation of transcription elongation, DNA-dependent; IEA:InterPro.::GO:0006357; P:regulation of transcription from RNA polymerase II promoter; IEA:InterPro.::GO:0006354; P:transcription elongation, DNA-dependent; IEA:InterPro.
35Q1RMP0    123   RPA12_BOVIN DNA-directed RNA polymerase I sub...1150.00004     42.7     30     43GO:0005730; C:nucleolus; IEA:UniProtKB-SubCell.
GO:0003899; F:DNA-directed RNA polymerase activity; IEA:UniProtKB-KW.::GO:0003676; F:nucleic acid binding; IEA:InterPro.::GO:0008270; F:zinc ion binding; IEA:InterPro.
36Q8SQU1    108   RPB9_ENCCU DNA-directed RNA polymerase II sub...1070.00006     42     25     42GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0003677; F:DNA binding; IEA:InterPro.::GO:0003899; F:DNA-directed RNA polymerase activity; IEA:UniProtKB-KW.::GO:0008270; F:zinc ion binding; IEA:InterPro.
37Q9QVN7    299   TCEA2_MOUSE Transcription elongation factor A...360.00007     43.9     47     69GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0003677; F:DNA binding; IEA:UniProtKB-KW.::GO:0003746; F:translation elongation factor activity; IEA:InterPro.::GO:0008270; F:zinc ion binding; IEA:InterPro.
GO:0032784; P:regulation of transcription elongation, DNA-dependent; IEA:InterPro.::GO:0006357; P:regulation of transcription from RNA polymerase II promoter; IEA:InterPro.::GO:0006354; P:transcription elongation, DNA-dependent; IEA:InterPro.
38Q63799    299   TCEA2_RAT Transcription elongation factor A p...360.00008     43.5     47     69GO:0005634; C:nucleus; TAS:RGD.
GO:0003677; F:DNA binding; IEA:UniProtKB-KW.::GO:0003746; F:translation elongation factor activity; IEA:InterPro.::GO:0008270; F:zinc ion binding; IEA:InterPro.
GO:0045944; P:positive regulation of transcription from RNA polymerase II promoter; IDA:RGD.::GO:0032784; P:regulation of transcription elongation, DNA-dependent; IEA:InterPro.::GO:0006354; P:transcription elongation, DNA-dependent; IEA:InterPro.
39O94703    119   RPA12_SCHPO DNA-directed RNA polymerase I sub...1190.0001     41.6     27     39GO:0005829; C:cytosol; IDA:PomBase.::GO:0005736; C:DNA-directed RNA polymerase I complex; IGI:PomBase.
GO:0003677; F:DNA binding; IEA:InterPro.::GO:0003899; F:DNA-directed RNA polymerase activity; IEA:UniProtKB-KW.::GO:0008270; F:zinc ion binding; IEA:InterPro.
GO:0006360; P:transcription from RNA polymerase I promoter; IGI:PomBase.::GO:0006353; P:transcription termination, DNA-dependent; IGI:PomBase.
40Q54YG9    319   TCEA1_DICDI Transcription elongation factor A...690.0002     42.7     38     51GO:0005654; C:nucleoplasm; ISS:dictyBase.
GO:0003677; F:DNA binding; IEA:UniProtKB-KW.::GO:0008270; F:zinc ion binding; IEA:InterPro.
GO:0032784; P:regulation of transcription elongation, DNA-dependent; IEA:InterPro.::GO:0006357; P:regulation of transcription from RNA polymerase II promoter; IEA:InterPro.::GO:0006368; P:transcription elongation from RNA polymerase II promoter; ISS:dictyBase.
41Q5TM50    126   RPA12_MACMU DNA-directed RNA polymerase I sub...1150.0003     40.4     28     41GO:0005730; C:nucleolus; IEA:UniProtKB-SubCell.
GO:0003899; F:DNA-directed RNA polymerase activity; IEA:UniProtKB-KW.::GO:0003676; F:nucleic acid binding; IEA:InterPro.::GO:0008270; F:zinc ion binding; IEA:InterPro.
42Q1XHV8    126   RPA12_PANTR DNA-directed RNA polymerase I sub...1150.0004     40     28     41GO:0005730; C:nucleolus; IEA:UniProtKB-SubCell.
GO:0003899; F:DNA-directed RNA polymerase activity; IEA:UniProtKB-KW.::GO:0003676; F:nucleic acid binding; IEA:InterPro.::GO:0008270; F:zinc ion binding; IEA:InterPro.
43Q9P1U0    126   RPA12_HUMAN DNA-directed RNA polymerase I sub...1150.0004     40     28     41GO:0005730; C:nucleolus; IEA:UniProtKB-SubCell.
GO:0003899; F:DNA-directed RNA polymerase activity; IEA:UniProtKB-KW.::GO:0003676; F:nucleic acid binding; IEA:InterPro.::GO:0008270; F:zinc ion binding; IEA:InterPro.
44P27999    122   RPB9_YEAST DNA-directed RNA polymerase II sub...1100.0005     39.7     25     39GO:0005665; C:DNA-directed RNA polymerase II, core complex; IDA:SGD.
GO:0003677; F:DNA binding; IEA:InterPro.::GO:0003899; F:DNA-directed RNA polymerase activity; IEA:UniProtKB-KW.::GO:0008270; F:zinc ion binding; IEA:InterPro.
GO:0006281; P:DNA repair; IEA:UniProtKB-KW.::GO:0001193; P:maintenance of transcriptional fidelity during DNA-dependent transcription elongation from RNA polymerase II promoter; IMP:SGD.::GO:0006367; P:transcription initiation from RNA polymerase II promoter; IMP:SGD.
45Q6FS48    122   RPB9_CANGA DNA-directed RNA polymerase II sub...1140.0007     39.3     27     38GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0003677; F:DNA binding; IEA:InterPro.::GO:0003899; F:DNA-directed RNA polymerase activity; IEA:UniProtKB-KW.::GO:0008270; F:zinc ion binding; IEA:InterPro.
46Q755B3    122   RPB9_ASHGO DNA-directed RNA polymerase II sub...1100.002     38.1     26     37GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0003677; F:DNA binding; IEA:InterPro.::GO:0003899; F:DNA-directed RNA polymerase activity; IEA:UniProtKB-KW.::GO:0008270; F:zinc ion binding; IEA:InterPro.
47Q197A5    137   VF349_IIV3 Putative transcription elongation ...350.02     35.8     46     49
GO:0003676; F:nucleic acid binding; IEA:InterPro.::GO:0008270; F:zinc ion binding; IEA:InterPro.
GO:0006351; P:transcription, DNA-dependent; IEA:InterPro.
48Q91FH5    140   VF349_IIV6 Putative transcription elongation ...330.1     33.9     39     52
GO:0003676; F:nucleic acid binding; IEA:InterPro.::GO:0008270; F:zinc ion binding; IEA:InterPro.
GO:0006351; P:transcription, DNA-dependent; IEA:InterPro.
49P0C8F6    243   TFS2_ASFM2 Transcription factor S-II-related ...620.15     33.9     31     45
GO:0003676; F:nucleic acid binding; IEA:InterPro.::GO:0008270; F:zinc ion binding; IEA:InterPro.
GO:0032784; P:regulation of transcription elongation, DNA-dependent; IEA:InterPro.::GO:0006357; P:regulation of transcription from RNA polymerase II promoter; IEA:InterPro.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW.
50P0C8F8    243   TFS2_ASFWA Transcription factor S-II-related ...620.16     33.9     31     45
GO:0003676; F:nucleic acid binding; IEA:InterPro.::GO:0008270; F:zinc ion binding; IEA:InterPro.
GO:0032784; P:regulation of transcription elongation, DNA-dependent; IEA:InterPro.::GO:0006357; P:regulation of transcription from RNA polymerase II promoter; IEA:InterPro.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW.
51P0C8F7    243   TFS2_ASFP4 Transcription factor S-II-related ...620.16     33.9     31     45GO:0005634; C:nucleus; IEA:InterPro.
GO:0003676; F:nucleic acid binding; IEA:InterPro.::GO:0008270; F:zinc ion binding; IEA:InterPro.
GO:0032784; P:regulation of transcription elongation, DNA-dependent; IEA:InterPro.::GO:0006357; P:regulation of transcription from RNA polymerase II promoter; IEA:InterPro.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW.
52P27948    243   TFS2_ASFB7 Transcription factor S-II-related ...620.16     33.9     31     45GO:0005634; C:nucleus; IEA:InterPro.
GO:0003676; F:nucleic acid binding; IEA:InterPro.::GO:0008270; F:zinc ion binding; IEA:InterPro.
GO:0032784; P:regulation of transcription elongation, DNA-dependent; IEA:InterPro.::GO:0006357; P:regulation of transcription from RNA polymerase II promoter; IEA:InterPro.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW.
53P0C8F5    243   TFS2_ASFK5 Transcription factor S-II-related ...620.47     32.3     29     45
GO:0003676; F:nucleic acid binding; IEA:InterPro.::GO:0008270; F:zinc ion binding; IEA:InterPro.
GO:0032784; P:regulation of transcription elongation, DNA-dependent; IEA:InterPro.::GO:0006357; P:regulation of transcription from RNA polymerase II promoter; IEA:InterPro.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW.
54Q6KI08    1424   RPOC_MYCMO DNA-directed RNA polymerase subuni...573.8     30     37     46
GO:0003677; F:DNA binding; IEA:InterPro.::GO:0003899; F:DNA-directed RNA polymerase activity; IEA:UniProtKB-KW.
records
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