Fungal Genome Collection
University of Nebraska Lincoln
School of Biological Sciences and Center for Plant Science Innovation
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UniProt_SwissProt BLAST: Single locus
Species:
Saccharomyces cerevisiae S288C
Locus:
YDR030C
Length:
506
Number of sequences:
5887
Description:
YDR030C RAD28 SGDID:S000002437, Chr IV from 503273-501753, Genome Release 64-1-1, reverse complement, Verified ORF, "Protein involved in DNA repair, related to the human CSA protein that is involved in transcription-coupled repair nucleotide excision repair"
rec.SubjectHit LengthDescriptionAlign.LenE valueBit score% ident.  % pos.GO associations
271Q05048    431   CSTF1_HUMAN Cleavage stimulation factor subun...1400.31     37.4     25     42GO:0005654; C:nucleoplasm; TAS:Reactome.
GO:0005515; F:protein binding; IPI:UniProtKB.::GO:0003723; F:RNA binding; TAS:ProtInc.
GO:0006379; P:mRNA cleavage; TAS:ProtInc.::GO:0006378; P:mRNA polyadenylation; TAS:ProtInc.::GO:0000398; P:nuclear mRNA splicing, via spliceosome; TAS:Reactome.::GO:0006369; P:termination of RNA polymerase II transcription; TAS:Reactome.
272Q2HBX6    454   LIS11_CHAGB Nuclear distribution protein PAC1...1280.31     37.4     23     39GO:0005737; C:cytoplasm; IEA:UniProtKB-KW.::GO:0005874; C:microtubule; IEA:UniProtKB-KW.::GO:0000922; C:spindle pole; IEA:UniProtKB-SubCell.
GO:0051301; P:cell division; IEA:UniProtKB-KW.::GO:0007067; P:mitosis; IEA:UniProtKB-KW.::GO:0006810; P:transport; IEA:UniProtKB-KW.
273B4MU54    423   WDR12_DROWI Ribosome biogenesis protein WDR12...1300.32     37.4     28     45GO:0005654; C:nucleoplasm; IEA:UniProtKB-SubCell.::GO:0070545; C:PeBoW complex; ISS:UniProtKB.
GO:0000463; P:maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA); ISS:UniProtKB.
274P0CS36    435   HAT2_CRYNJ Histone acetyltransferase type B s...1570.32     37.4     23     33GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0016568; P:chromatin modification; IEA:UniProtKB-KW.::GO:0006281; P:DNA repair; IEA:UniProtKB-KW.
275P0CS37    435   HAT2_CRYNB Histone acetyltransferase type B s...1570.32     37.4     23     33GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0016568; P:chromatin modification; IEA:UniProtKB-KW.::GO:0006281; P:DNA repair; IEA:UniProtKB-KW.
276P16649    713   TUP1_YEAST General transcriptional corepresso...1130.32     37.4     24     42GO:0017053; C:transcriptional repressor complex; IDA:SGD.
GO:0042393; F:histone binding; IDA:SGD.::GO:0042826; F:histone deacetylase binding; IDA:SGD.::GO:0036033; F:mediator complex binding; IDA:SGD.::GO:0080025; F:phosphatidylinositol-3,5-bisphosphate binding; IDA:SGD.::GO:0001191; F:RNA polymerase II transcription factor binding transcription factor activity involved in negative regulation of transcription; IDA:SGD.::GO:0043130; F:ubiquitin binding; IDA:SGD.
GO:0043486; P:histone exchange; IMP:SGD.::GO:0035955; P:negative regulation of dipeptide transport by negative regulation of transcription from RNA polymerase II promoter; IMP:SGD.::GO:0001198; P:negative regulation of mating-type specific transcription from RNA polymerase II promoter; IMP:SGD.::GO:0000433; P:negative regulation of transcription from RNA polymerase II promoter by glucose; IMP:SGD.::GO:0007070; P:negative regulation of transcription from RNA polymerase II promoter during mitosis; IMP:SGD.::GO:0016584; P:nucleosome positioning; IDA:SGD.::GO:2000531; P:regulation of fatty acid biosynthetic process by regulation of transcription from RNA polymerase II promoter; IMP:SGD.::GO:2001020; P:regulation of response to DNA damage stimulus; IMP:SGD.::GO:0061418; P:regulation of transcription from RNA polymerase II promoter in response to hypoxia; IMP:SGD.::GO:0061392; P:regulation of transcription from RNA polymerase II promoter in response to osmotic stress; IMP:SGD.
277P74442    1191   Y143_SYNY3 Uncharacterized WD repeat-containi...1920.33     37.4     23     39
278Q9BQ67    446   GRWD1_HUMAN Glutamate-rich WD repeat-containi...1290.33     37.4     20     40GO:0005737; C:cytoplasm; IDA:HPA.::GO:0005730; C:nucleolus; IDA:HPA.
279Q54DM1    331   BUB3_DICDI Mitotic checkpoint protein bub3 OS...880.34     37     28     56GO:0000776; C:kinetochore; ISS:dictyBase.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0051301; P:cell division; IEA:UniProtKB-KW.::GO:0007067; P:mitosis; IEA:UniProtKB-KW.::GO:0007093; P:mitotic cell cycle checkpoint; ISS:dictyBase.
280Q9VKQ3    420   WDR12_DROME Ribosome biogenesis protein WDR12...1300.34     37     26     45GO:0005654; C:nucleoplasm; IEA:UniProtKB-SubCell.::GO:0070545; C:PeBoW complex; ISS:UniProtKB.
GO:0000463; P:maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA); ISS:UniProtKB.
281Q91WQ5    589   TAF5L_MOUSE TAF5-like RNA polymerase II p300/...1250.35     37.4     26     45GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0006355; P:regulation of transcription, DNA-dependent; IEA:UniProtKB-KW.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW.
282Q6P5M2    305   WDR61_DANRE WD repeat-containing protein 61 O...1180.36     37     25     43GO:0016593; C:Cdc73/Paf1 complex; ISS:UniProtKB.::GO:0055087; C:Ski complex; ISS:UniProtKB.::GO:0035327; C:transcriptionally active chromatin; ISS:UniProtKB.
GO:0032968; P:positive regulation of transcription elongation from RNA polymerase II promoter; ISS:UniProtKB.::GO:0045944; P:positive regulation of transcription from RNA polymerase II promoter; ISS:UniProtKB.
283B2AEZ5    464   LIS11_PODAN Nuclear distribution protein PAC1...1280.36     37     23     39GO:0005737; C:cytoplasm; IEA:UniProtKB-KW.::GO:0005874; C:microtubule; IEA:UniProtKB-KW.::GO:0000922; C:spindle pole; IEA:UniProtKB-SubCell.
GO:0051301; P:cell division; IEA:UniProtKB-KW.::GO:0007067; P:mitosis; IEA:UniProtKB-KW.::GO:0006810; P:transport; IEA:UniProtKB-KW.
284Q6L4F8    336   GBLPB_ORYSJ Guanine nucleotide-binding protei...1790.36     37     26     42
GO:0004871; F:signal transducer activity; IEA:UniProtKB-KW.
285O24456    327   GBLPA_ARATH Guanine nucleotide-binding protei...1780.36     37     25     44GO:0009507; C:chloroplast; IDA:TAIR.::GO:0022626; C:cytosolic ribosome; IDA:TAIR.::GO:0005634; C:nucleus; IDA:TAIR.
GO:0005515; F:protein binding; IPI:TAIR.::GO:0004871; F:signal transducer activity; IEA:UniProtKB-KW.
GO:0071215; P:cellular response to abscisic acid stimulus; IEP:TAIR.::GO:0006417; P:regulation of translation; IGI:TAIR.::GO:0046686; P:response to cadmium ion; IEP:TAIR.::GO:0042254; P:ribosome biogenesis; IGI:TAIR.::GO:0009845; P:seed germination; IGI:TAIR.
286Q8WVS4    1066   WDR60_HUMAN WD repeat-containing protein 60 O...380.37     37.4     34     63
287Q6C7Q4    452   HAT2_YARLI Histone acetyltransferase type B s...1550.39     37     25     37GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0016568; P:chromatin modification; IEA:UniProtKB-KW.::GO:0006281; P:DNA repair; IEA:UniProtKB-KW.
288Q5AXW3    654   MDV1_EMENI Mitochondrial division protein 1 O...620.39     37     29     50GO:0005741; C:mitochondrial outer membrane; IEA:UniProtKB-SubCell.
289Q91VU6    549   DCA11_MOUSE DDB1- and CUL4-associated factor ...2180.39     37     20     39GO:0080008; C:CUL4 RING ubiquitin ligase complex; ISS:UniProtKB.
290Q8NAA4    619   A16L2_HUMAN Autophagy-related protein 16-2 OS...1081.7     35     23     47GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0006914; P:autophagy; IEA:UniProtKB-KW.::GO:0015031; P:protein transport; IEA:UniProtKB-KW.
291Q29L19    326   EIF3I_DROPS Eukaryotic translation initiation...1680.43     36.6     20     39GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0003743; F:translation initiation factor activity; IEA:UniProtKB-KW.
292B4GSH1    326   EIF3I_DROPE Eukaryotic translation initiation...1680.43     36.6     20     39GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0003743; F:translation initiation factor activity; IEA:UniProtKB-KW.
293B4LUA5    322   EIF3I_DROVI Eukaryotic translation initiation...1680.43     36.6     21     39GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0003743; F:translation initiation factor activity; IEA:UniProtKB-KW.
294Q5U4F6    535   WDR34_MOUSE WD repeat-containing protein 34 O...1080.44     37     24     44GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
295P56094    682   TUP1_KLULA General transcriptional corepresso...1130.45     37     24     44
GO:0006355; P:regulation of transcription, DNA-dependent; IEA:UniProtKB-KW.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW.
296Q8K450    639   SPG16_MOUSE Sperm-associated antigen 16 prote...1390.45     37     28     43GO:0035085; C:cilium axoneme; IDA:UniProtKB.::GO:0035086; C:flagellar axoneme; IDA:MGI.::GO:0005874; C:microtubule; IDA:MGI.::GO:0005634; C:nucleus; IDA:MGI.
GO:0005515; F:protein binding; IPI:UniProtKB.::GO:0019901; F:protein kinase binding; IPI:UniProtKB.
GO:0042384; P:cilium assembly; IDA:UniProtKB.::GO:0007283; P:spermatogenesis; IMP:MGI.
297Q4V7Y7    655   KTNB1_XENLA Katanin p80 WD40-containing subun...1350.46     37     22     48GO:0005874; C:microtubule; IEA:UniProtKB-KW.::GO:0005815; C:microtubule organizing center; IEA:UniProtKB-SubCell.::GO:0000922; C:spindle pole; IEA:UniProtKB-SubCell.
GO:0051301; P:cell division; IEA:UniProtKB-KW.::GO:0007067; P:mitosis; IEA:UniProtKB-KW.
298P25382    515   NLE1_YEAST Ribosome assembly protein 4 OS=Sac...580.46     36.6     31     59GO:0005730; C:nucleolus; IDA:SGD.
GO:0005515; F:protein binding; IPI:IntAct.
GO:0000027; P:ribosomal large subunit assembly; IMP:SGD.
299Q802W4    722   NOL10_DANRE Nucleolar protein 10 OS=Danio rer...360.47     37     44     61GO:0005730; C:nucleolus; IEA:UniProtKB-SubCell.
300Q05946    817   UTP13_YEAST U3 small nucleolar RNA-associated...1300.47     37     28     45GO:0034388; C:Pwp2p-containing subcomplex of 90S preribosome; IDA:SGD.::GO:0032040; C:small-subunit processome; IDA:SGD.
GO:0005515; F:protein binding; IPI:IntAct.::GO:0030515; F:snoRNA binding; IPI:SGD.
GO:0000480; P:endonucleolytic cleavage in 5'-ETS of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA); IMP:SGD.::GO:0000447; P:endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA); IMP:SGD.::GO:0000472; P:endonucleolytic cleavage to generate mature 5'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA); IMP:SGD.
301Q294Y7    503   WDR55_DROPS WD repeat-containing protein 55 h...980.48     36.6     33     48
records
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