Fungal Genome Collection
University of Nebraska Lincoln
School of Biological Sciences and Center for Plant Science Innovation
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UniProt_SwissProt BLAST: Single locus
Species:
Saccharomyces cerevisiae S288C
Locus:
YDR030C
Length:
506
Number of sequences:
5887
Description:
YDR030C RAD28 SGDID:S000002437, Chr IV from 503273-501753, Genome Release 64-1-1, reverse complement, Verified ORF, "Protein involved in DNA repair, related to the human CSA protein that is involved in transcription-coupled repair nucleotide excision repair"
rec.SubjectHit LengthDescriptionAlign.LenE valueBit score% ident.  % pos.GO associations
151P35605    906   COPB2_BOVIN Coatomer subunit beta' OS=Bos tau...1950.02     41.2     21     38GO:0030126; C:COPI vesicle coat; IDA:UniProtKB.
GO:0005080; F:protein kinase C binding; ISS:AgBase.::GO:0005198; F:structural molecule activity; IEA:InterPro.
GO:0006891; P:intra-Golgi vesicle-mediated transport; TAS:UniProtKB.::GO:0006886; P:intracellular protein transport; IEA:InterPro.::GO:0006890; P:retrograde vesicle-mediated transport, Golgi to ER; TAS:UniProtKB.
152O55029    905   COPB2_MOUSE Coatomer subunit beta' OS=Mus mus...1970.021     41.2     21     40
GO:0005488; F:binding; IEA:InterPro.::GO:0005198; F:structural molecule activity; IEA:InterPro.
GO:0006886; P:intracellular protein transport; IEA:InterPro.
153Q4R4I8    906   COPB2_MACFA Coatomer subunit beta' OS=Macaca ...1950.021     41.2     21     38GO:0030663; C:COPI coated vesicle membrane; IEA:UniProtKB-SubCell.::GO:0030117; C:membrane coat; IEA:InterPro.
GO:0005488; F:binding; IEA:InterPro.::GO:0005198; F:structural molecule activity; IEA:InterPro.
GO:0006886; P:intracellular protein transport; IEA:InterPro.::GO:0016192; P:vesicle-mediated transport; IEA:UniProtKB-KW.
154O14727    1248   APAF_HUMAN Apoptotic protease-activating fact...3460.04     40.4     20     41GO:0043293; C:apoptosome; IDA:UniProtKB.::GO:0005794; C:Golgi apparatus; IDA:HPA.::GO:0005634; C:nucleus; IDA:HPA.
GO:0043531; F:ADP binding; IEA:InterPro.::GO:0005524; F:ATP binding; IEA:UniProtKB-KW.::GO:0008656; F:cysteine-type endopeptidase activator activity involved in apoptotic process; NAS:UniProtKB.::GO:0005515; F:protein binding; IPI:UniProtKB.
GO:0008635; P:activation of cysteine-type endopeptidase activity involved in apoptotic process by cytochrome c; IDA:UniProtKB.::GO:0006952; P:defense response; IEA:InterPro.::GO:0008629; P:induction of apoptosis by intracellular signals; TAS:Reactome.::GO:0097193; P:intrinsic apoptotic signaling pathway; TAS:UniProtKB.::GO:0007399; P:nervous system development; TAS:ProtInc.
155Q75C99    423   HAT2_ASHGO Histone acetyltransferase type B s...1510.021     40.8     22     45GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0016568; P:chromatin modification; IEA:UniProtKB-KW.::GO:0006281; P:DNA repair; IEA:UniProtKB-KW.
156Q6NX08    422   WDR12_DANRE Ribosome biogenesis protein wdr12...716.8     33.1     28     46GO:0005654; C:nucleoplasm; ISS:UniProtKB.::GO:0070545; C:PeBoW complex; ISS:UniProtKB.::GO:0030687; C:preribosome, large subunit precursor; ISS:UniProtKB.
GO:0008283; P:cell proliferation; ISS:UniProtKB.::GO:0000466; P:maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA); ISS:UniProtKB.::GO:0000463; P:maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA); ISS:UniProtKB.
157Q5R664    906   COPB2_PONAB Coatomer subunit beta' OS=Pongo a...1950.022     41.2     21     38GO:0030663; C:COPI coated vesicle membrane; IEA:UniProtKB-SubCell.::GO:0030117; C:membrane coat; IEA:InterPro.
GO:0005488; F:binding; IEA:InterPro.::GO:0005198; F:structural molecule activity; IEA:InterPro.
GO:0006886; P:intracellular protein transport; IEA:InterPro.::GO:0016192; P:vesicle-mediated transport; IEA:UniProtKB-KW.
158Q8YV57    1683   Y2124_NOSS1 Uncharacterized WD repeat-contain...1990.024     41.2     25     43
GO:0004197; F:cysteine-type endopeptidase activity; IEA:InterPro.
GO:0006508; P:proteolysis; IEA:InterPro.
159Q4P553    485   HAT2_USTMA Histone acetyltransferase type B s...2080.025     40.8     19     38GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0016568; P:chromatin modification; IEA:UniProtKB-KW.::GO:0006281; P:DNA repair; IEA:UniProtKB-KW.
160Q5ZIU8    657   KTNB1_CHICK Katanin p80 WD40-containing subun...1340.026     40.8     23     42GO:0005874; C:microtubule; IEA:UniProtKB-KW.::GO:0005815; C:microtubule organizing center; IEA:UniProtKB-SubCell.::GO:0000922; C:spindle pole; IEA:UniProtKB-SubCell.
GO:0051301; P:cell division; IEA:UniProtKB-KW.::GO:0007067; P:mitosis; IEA:UniProtKB-KW.
161Q9P783    480   RRB1_SCHPO Ribosome assembly protein rrb1 OS=...1420.027     40.8     22     46GO:0005829; C:cytosol; IDA:PomBase.::GO:0005730; C:nucleolus; ISS:PomBase.::GO:0043234; C:protein complex; NAS:PomBase.
GO:0006364; P:rRNA processing; IEA:UniProtKB-KW.
162Q6H8D6    910   COB23_ORYSJ Putative coatomer subunit beta'-3...2710.028     40.8     22     38GO:0030663; C:COPI coated vesicle membrane; IEA:UniProtKB-SubCell.::GO:0030117; C:membrane coat; IEA:InterPro.
GO:0005488; F:binding; IEA:InterPro.::GO:0005198; F:structural molecule activity; IEA:InterPro.
GO:0006886; P:intracellular protein transport; IEA:InterPro.::GO:0016192; P:vesicle-mediated transport; IEA:UniProtKB-KW.
163Q08E38    504   PRP19_BOVIN Pre-mRNA-processing factor 19 OS=...1340.028     40.8     24     47GO:0005819; C:spindle; IEA:UniProtKB-SubCell.::GO:0000151; C:ubiquitin ligase complex; IEA:InterPro.
GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
GO:0006281; P:DNA repair; IEA:UniProtKB-KW.
164B3MJV8    419   WDR12_DROAN Ribosome biogenesis protein WDR12...1300.03     40.4     28     46GO:0005654; C:nucleoplasm; IEA:UniProtKB-SubCell.::GO:0070545; C:PeBoW complex; ISS:UniProtKB.
GO:0000463; P:maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA); ISS:UniProtKB.
165P49695    742   PKWA_THECU Probable serine/threonine-protein ...1140.03     40.8     24     44
GO:0005524; F:ATP binding; IEA:UniProtKB-KW.::GO:0004674; F:protein serine/threonine kinase activity; IEA:UniProtKB-KW.
166B3RQN1    432   WDR12_TRIAD Ribosome biogenesis protein WDR12...1370.031     40.4     28     43GO:0005730; C:nucleolus; IEA:UniProtKB-SubCell.::GO:0005654; C:nucleoplasm; IEA:UniProtKB-SubCell.
GO:0006364; P:rRNA processing; IEA:UniProtKB-KW.
167Q0UXP3    471   YTM1_PHANO Ribosome biogenesis protein YTM1 O...1250.032     40.4     18     46GO:0005730; C:nucleolus; IEA:UniProtKB-SubCell.::GO:0005654; C:nucleoplasm; IEA:UniProtKB-SubCell.
GO:0006364; P:rRNA processing; IEA:UniProtKB-KW.
168Q9JMJ4    504   PRP19_RAT Pre-mRNA-processing factor 19 OS=Ra...1340.033     40.4     24     47GO:0005819; C:spindle; IEA:UniProtKB-SubCell.::GO:0000151; C:ubiquitin ligase complex; IEA:InterPro.
GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
GO:0006281; P:DNA repair; IEA:UniProtKB-KW.
169Q99KP6    504   PRP19_MOUSE Pre-mRNA-processing factor 19 OS=...1340.033     40.4     24     47GO:0005811; C:lipid particle; IDA:MGI.::GO:0005819; C:spindle; IEA:UniProtKB-SubCell.::GO:0000151; C:ubiquitin ligase complex; IEA:InterPro.
GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
GO:0006281; P:DNA repair; IEA:UniProtKB-KW.::GO:0001833; P:inner cell mass cell proliferation; IMP:MGI.::GO:0008610; P:lipid biosynthetic process; IDA:MGI.::GO:0045665; P:negative regulation of neuron differentiation; IDA:MGI.::GO:0048711; P:positive regulation of astrocyte differentiation; IDA:MGI.::GO:0048026; P:positive regulation of nuclear mRNA splicing, via spliceosome; IMP:MGI.
170Q9DAW6    521   PRP4_MOUSE U4/U6 small nuclear ribonucleoprot...1680.034     40.4     26     44GO:0016607; C:nuclear speck; IEA:UniProtKB-SubCell.::GO:0005681; C:spliceosomal complex; IEA:UniProtKB-KW.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.
171Q676U5    607   A16L1_HUMAN Autophagy-related protein 16-1 OS...2190.035     40.4     20     42GO:0005776; C:autophagic vacuole; ISS:UniProtKB.::GO:0034045; C:pre-autophagosomal structure membrane; IEA:UniProtKB-SubCell.
GO:0005515; F:protein binding; IPI:IntAct.
GO:0000045; P:autophagic vacuole assembly; NAS:UniProtKB.::GO:0051260; P:protein homooligomerization; NAS:UniProtKB.::GO:0015031; P:protein transport; IEA:UniProtKB-KW.
172A3LQ86    467   YTM1_PICST Ribosome biogenesis protein YTM1 O...1470.035     40.4     22     40GO:0005730; C:nucleolus; IEA:UniProtKB-SubCell.::GO:0005654; C:nucleoplasm; IEA:UniProtKB-SubCell.
GO:0006364; P:rRNA processing; IEA:UniProtKB-KW.
173Q3MHE2    521   PRP4_BOVIN U4/U6 small nuclear ribonucleoprot...1480.037     40.4     27     43GO:0016607; C:nuclear speck; IEA:UniProtKB-SubCell.::GO:0005681; C:spliceosomal complex; IEA:UniProtKB-KW.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.
174Q20168    1000   COPB2_CAEEL Probable coatomer subunit beta' O...1650.037     40.4     24     43GO:0030663; C:COPI coated vesicle membrane; IEA:UniProtKB-SubCell.::GO:0030117; C:membrane coat; IEA:InterPro.
GO:0005198; F:structural molecule activity; IEA:InterPro.
GO:0006915; P:apoptotic process; IMP:WormBase.::GO:0009792; P:embryo development ending in birth or egg hatching; IMP:WormBase.::GO:0006886; P:intracellular protein transport; IMP:WormBase.::GO:0002119; P:nematode larval development; IMP:WormBase.::GO:0048599; P:oocyte development; IMP:WormBase.::GO:0006898; P:receptor-mediated endocytosis; IMP:WormBase.::GO:0032940; P:secretion by cell; IMP:WormBase.
175Q6PA72    326   LST8_XENLA Target of rapamycin complex subuni...2370.039     40     24     40GO:0005737; C:cytoplasm; ISS:UniProtKB.
176Q5I0B4    326   LST8_XENTR Target of rapamycin complex subuni...2370.04     40     24     40GO:0005737; C:cytoplasm; ISS:UniProtKB.
177Q9AV81    527   PUB72_ORYSJ U-box domain-containing protein 7...1390.04     40     26     48GO:0000151; C:ubiquitin ligase complex; IEA:InterPro.
GO:0004842; F:ubiquitin-protein ligase activity; IDA:UniProtKB.
178Q7SYD5    1254   SC31A_DANRE Protein transport protein Sec31A ...1490.04     40.4     28     42GO:0005789; C:endoplasmic reticulum membrane; IEA:UniProtKB-SubCell.::GO:0012507; C:ER to Golgi transport vesicle membrane; IEA:UniProtKB-SubCell.
GO:0015031; P:protein transport; IEA:UniProtKB-KW.::GO:0016192; P:vesicle-mediated transport; IEA:UniProtKB-KW.
179Q29RH4    351   THOC3_BOVIN THO complex subunit 3 OS=Bos taur...1590.041     40     23     36GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0051028; P:mRNA transport; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.
180Q8TEB1    546   DCA11_HUMAN DDB1- and CUL4-associated factor ...2220.041     40     22     37GO:0080008; C:CUL4 RING ubiquitin ligase complex; IDA:UniProtKB.
GO:0016567; P:protein ubiquitination; IC:UniProtKB.
181Q96JK2    942   DCAF5_HUMAN DDB1- and CUL4-associated factor ...1200.044     40.4     24     45GO:0080008; C:CUL4 RING ubiquitin ligase complex; IDA:UniProtKB.
GO:0016567; P:protein ubiquitination; IC:UniProtKB.
records
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