UniProt_SwissProt BLAST: Single locus

Species:

Saccharomyces cerevisiae S288C

Locus:

YDR030C

Length:

506

Number of sequences:

5887

Description:

YDR030C RAD28 SGDID:S000002437, Chr IV from 503273-501753, Genome Release 64-1-1, reverse complement, Verified ORF, "Protein involved in DNA repair, related to the human CSA protein that is involved in transcription-coupled repair nucleotide excision repair"

rec.	Subject	Hit Length	Description	Align.Len	E value	Bit score	% ident.	% pos.	GO associations
121	O35142	905	COPB2_RAT Coatomer subunit beta' OS=Rattus no...	265	0.007	42.7	20	39	GO:0030663; C:COPI coated vesicle membrane; IEA:UniProtKB-SubCell.::GO:0030117; C:membrane coat; IEA:InterPro.
									GO:0005080; F:protein kinase C binding; IPI:RGD.::GO:0005198; F:structural molecule activity; IEA:InterPro.
									GO:0006886; P:intracellular protein transport; IEA:InterPro.::GO:0016192; P:vesicle-mediated transport; IEA:UniProtKB-KW.
122	Q75AV4	449	PFS2_ASHGO Polyadenylation factor subunit 2 O...	176	0.92	35.8	21	39	GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
									GO:0051301; P:cell division; IEA:UniProtKB-KW.::GO:0007059; P:chromosome segregation; IEA:UniProtKB-KW.::GO:0007067; P:mitosis; IEA:UniProtKB-KW.::GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.
123	Q7RY30	453	LIS11_NEUCR Nuclear distribution protein pac1...	148	0.007	42.4	20	40	GO:0005737; C:cytoplasm; IEA:UniProtKB-KW.::GO:0005874; C:microtubule; IEA:UniProtKB-KW.::GO:0000922; C:spindle pole; IEA:UniProtKB-SubCell.
									GO:0051301; P:cell division; IEA:UniProtKB-KW.::GO:0007067; P:mitosis; IEA:UniProtKB-KW.::GO:0006810; P:transport; IEA:UniProtKB-KW.
124	Q2TBP4	407	POC1A_BOVIN POC1 centriolar protein homolog A...	132	3.8	33.9	23	41	GO:0005814; C:centriole; ISS:UniProtKB.::GO:0005932; C:microtubule basal body; ISS:UniProtKB.
125	Q86VZ2	330	WDR5B_HUMAN WD repeat-containing protein 5B O...	166	0.59	36.2	22	42
126	Q5RE95	330	WDR5B_PONAB WD repeat-containing protein 5B O...	166	0.96	35.4	22	42
127	Q9NYS7	404	WSB2_HUMAN WD repeat and SOCS box-containing ...	196	0.008	42.4	23	41
									GO:0035556; P:intracellular signal transduction; IEA:InterPro.
128	Q04305	513	UTP15_YEAST U3 small nucleolar RNA-associated...	166	0.008	42.4	25	43	GO:0033553; C:rDNA heterochromatin; IDA:SGD.::GO:0032040; C:small-subunit processome; IDA:SGD.::GO:0034455; C:t-UTP complex; IDA:SGD.
									GO:0005515; F:protein binding; IPI:IntAct.::GO:0030515; F:snoRNA binding; IPI:SGD.
									GO:0000462; P:maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA); IMP:SGD.::GO:0045943; P:positive regulation of transcription from RNA polymerase I promoter; IMP:SGD.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW.
129	P39108	375	PEX7_YEAST Peroxisomal targeting signal 2 rec...	141	0.008	42	26	40	GO:0005829; C:cytosol; IDA:SGD.::GO:0005777; C:peroxisome; IDA:SGD.
									GO:0005053; F:peroxisome matrix targeting signal-2 binding; IDA:SGD.::GO:0005515; F:protein binding; IPI:UniProtKB.
									GO:0016560; P:protein import into peroxisome matrix, docking; IPI:SGD.
130	Q58D20	485	NLE1_BOVIN Notchless protein homolog 1 OS=Bos...	229	0.009	42	23	41	GO:0005730; C:nucleolus; IEA:UniProtKB-SubCell.
131	P29829	346	GBB2_DROME Guanine nucleotide-binding protein...	139	0.009	42	26	38	GO:0005737; C:cytoplasm; IDA:FlyBase.::GO:0005834; C:heterotrimeric G-protein complex; IDA:FlyBase.::GO:0016028; C:rhabdomere; IDA:FlyBase.
									GO:0003924; F:GTPase activity; IMP:FlyBase.::GO:0005515; F:protein binding; IPI:IntAct.::GO:0004871; F:signal transducer activity; IEA:UniProtKB-KW.
									GO:0007202; P:activation of phospholipase C activity; IMP:FlyBase.::GO:0016059; P:deactivation of rhodopsin mediated signaling; IMP:FlyBase.::GO:0016056; P:rhodopsin mediated signaling pathway; IMP:FlyBase.
132	Q2U5Z8	650	MDV1_ASPOR Mitochondrial division protein 1 O...	152	0.01	42.4	25	42	GO:0005741; C:mitochondrial outer membrane; IEA:UniProtKB-SubCell.
133	Q54JS5	1023	WDR24_DICDI WD repeat-containing protein 24 h...	132	0.01	42.4	23	39
134	Q9P775	516	YBEG_SCHPO Uncharacterized WD repeat-containi...	213	0.011	42	22	39	GO:0005829; C:cytosol; IDA:PomBase.::GO:0005730; C:nucleolus; IDA:PomBase.::GO:0043234; C:protein complex; NAS:PomBase.
									GO:0006364; P:rRNA processing; ISS:PomBase.
135	Q55AR8	355	SNR40_DICDI U5 small nuclear ribonucleoprotei...	150	0.011	41.6	24	43	GO:0005681; C:spliceosomal complex; ISS:dictyBase.
									GO:0000398; P:nuclear mRNA splicing, via spliceosome; IC:dictyBase.
136	Q0V8J1	406	WSB2_BOVIN WD repeat and SOCS box-containing ...	196	0.011	42	23	43
									GO:0035556; P:intracellular signal transduction; IEA:InterPro.
137	Q54BI5	368	WDR53_DICDI WD repeat-containing protein 53 h...	128	0.012	41.6	30	46
138	Q4V8C4	328	WDR5B_RAT WD repeat-containing protein 5B OS=...	167	0.012	41.6	26	45
139	B5DG67	423	WDR12_SALSA Ribosome biogenesis protein wdr12...	71	5.1	33.5	30	46	GO:0005654; C:nucleoplasm; ISS:UniProtKB.::GO:0070545; C:PeBoW complex; ISS:UniProtKB.::GO:0030687; C:preribosome, large subunit precursor; ISS:UniProtKB.
									GO:0008283; P:cell proliferation; ISS:UniProtKB.::GO:0000466; P:maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA); ISS:UniProtKB.::GO:0000463; P:maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA); ISS:UniProtKB.
140	Q6CEW7	511	YTM1_YARLI Ribosome biogenesis protein YTM1 O...	146	0.012	42	25	42	GO:0005730; C:nucleolus; IEA:UniProtKB-SubCell.::GO:0005654; C:nucleoplasm; IEA:UniProtKB-SubCell.
									GO:0006364; P:rRNA processing; IEA:UniProtKB-KW.
141	Q8NBT0	407	POC1A_HUMAN POC1 centriolar protein homolog A...	132	5.8	33.1	23	40	GO:0005814; C:centriole; IDA:UniProtKB.::GO:0005932; C:microtubule basal body; IDA:UniProtKB.
142	A8QB65	433	WDR12_BRUMA Ribosome biogenesis protein WDR12...	103	1.8	34.7	31	53	GO:0005654; C:nucleoplasm; IEA:UniProtKB-SubCell.::GO:0070545; C:PeBoW complex; ISS:UniProtKB.
									GO:0000463; P:maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA); ISS:UniProtKB.
143	Q2KJJ5	800	TBL3_BOVIN Transducin beta-like protein 3 OS=...	221	0.014	42	22	37	GO:0005730; C:nucleolus; IEA:UniProtKB-SubCell.::GO:0032040; C:small-subunit processome; IEA:InterPro.
									GO:0006364; P:rRNA processing; IEA:InterPro.
144	Q8C0J2	607	A16L1_MOUSE Autophagy-related protein 16-1 OS...	219	0.014	41.6	21	42	GO:0000421; C:autophagic vacuole membrane; IDA:MGI.::GO:0034045; C:pre-autophagosomal structure membrane; IEA:UniProtKB-SubCell.
									GO:0005515; F:protein binding; IPI:MGI.
									GO:0000045; P:autophagic vacuole assembly; TAS:MGI.::GO:0015031; P:protein transport; IEA:UniProtKB-KW.
145	B4JB43	326	EIF3I_DROGR Eukaryotic translation initiation...	168	0.015	41.2	21	41	GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
									GO:0003743; F:translation initiation factor activity; IEA:UniProtKB-KW.
146	O54929	404	WSB2_MOUSE WD repeat and SOCS box-containing ...	212	0.016	41.2	22	41
									GO:0035556; P:intracellular signal transduction; IEA:InterPro.
147	Q6FJS0	455	PFS2_CANGA Polyadenylation factor subunit 2 O...	215	0.027	40.8	25	41	GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
									GO:0051301; P:cell division; IEA:UniProtKB-KW.::GO:0007059; P:chromosome segregation; IEA:UniProtKB-KW.::GO:0007067; P:mitosis; IEA:UniProtKB-KW.::GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.
148	P35606	906	COPB2_HUMAN Coatomer subunit beta' OS=Homo sa...	197	0.019	41.6	21	40	GO:0015629; C:actin cytoskeleton; IDA:HPA.::GO:0030126; C:COPI vesicle coat; IDA:UniProtKB.::GO:0005829; C:cytosol; TAS:Reactome.
									GO:0005488; F:binding; IEA:InterPro.::GO:0005198; F:structural molecule activity; IEA:InterPro.
									GO:0048205; P:COPI coating of Golgi vesicle; TAS:Reactome.::GO:0006891; P:intra-Golgi vesicle-mediated transport; IDA:UniProtKB.::GO:0006886; P:intracellular protein transport; IEA:InterPro.::GO:0006890; P:retrograde vesicle-mediated transport, Golgi to ER; TAS:UniProtKB.
149	Q9UMS4	504	PRP19_HUMAN Pre-mRNA-processing factor 19 OS=...	134	0.02	41.2	24	48	GO:0071013; C:catalytic step 2 spliceosome; IDA:UniProtKB.::GO:0016607; C:nuclear speck; IDA:BHF-UCL.::GO:0005819; C:spindle; IEA:UniProtKB-SubCell.::GO:0000151; C:ubiquitin ligase complex; IEA:InterPro.
									GO:0003677; F:DNA binding; IEA:UniProtKB-KW.::GO:0042802; F:identical protein binding; IPI:BHF-UCL.::GO:0034450; F:ubiquitin-ubiquitin ligase activity; IDA:MGI.
									GO:0006281; P:DNA repair; IEA:UniProtKB-KW.::GO:0000209; P:protein polyubiquitination; IDA:MGI.::GO:0000245; P:spliceosomal complex assembly; IMP:BHF-UCL.
150	O74319	642	TAF73_SCHPO Transcription initiation factor T...	121	0.02	41.2	26	51	GO:0005829; C:cytosol; IDA:PomBase.::GO:0005669; C:transcription factor TFIID complex; TAS:PomBase.
									GO:0000991; F:core RNA polymerase II binding transcription factor activity; IC:PomBase.
									GO:0030071; P:regulation of mitotic metaphase/anaphase transition; IGI:PomBase.::GO:0006355; P:regulation of transcription, DNA-dependent; IEA:UniProtKB-KW.::GO:0006367; P:transcription initiation from RNA polymerase II promoter; TAS:PomBase.
151	P35605	906	COPB2_BOVIN Coatomer subunit beta' OS=Bos tau...	195	0.02	41.2	21	38	GO:0030126; C:COPI vesicle coat; IDA:UniProtKB.
									GO:0005080; F:protein kinase C binding; ISS:AgBase.::GO:0005198; F:structural molecule activity; IEA:InterPro.
									GO:0006891; P:intra-Golgi vesicle-mediated transport; TAS:UniProtKB.::GO:0006886; P:intracellular protein transport; IEA:InterPro.::GO:0006890; P:retrograde vesicle-mediated transport, Golgi to ER; TAS:UniProtKB.

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